Sequence Analysis of the P and C Protein Genes of Human Parainfluenza Virus Type 3: Patterns of Amino Acid Sequence Homology Among Paramyxovirus Proteins

References

1. Alkhatib G., Briedis D. J. 1986; The predicted primary structure of the measles virus hemagglutinin. Virology 150:479–490
   [Google Scholar]
2. Barker W. C., Dayhoff M. D. 1982; Viral src gene products are related to the catalytic chains of mammalian cAMP-dependent protein kinase. Proceedings of the National Academy of Sciences, U.S.A. 79:2836–2839
   [Google Scholar]
3. Barrett T., Shrimpton S. B., Russell S. E. H. 1985; Nucleotide sequence of the entire protein coding version of canine distemper virus polymerase-associated (P) protein mRNA. Virus Research 3:367–372
   [Google Scholar]
4. Bellini W. I., Englund G., Rozenblatt S., Arnheiter H., Richardson C. D. 1985; Measles virus P gene codes for two proteins. Journal of Virology 53:908–915
   [Google Scholar]
5. Chanock R. M., McIntosh K. 1985; Parainfluenza viruses. In Virology pp 1241–1253 Edited by Fields B. N. New York: Raven Press;
   [Google Scholar]
6. Chinchar V. G., Portner A. 1981a; Functions of Sendai virus nucleocapsid polypeptides: enzymatic activities in nucleocapsids following cleavage of polypeptide P by Staphylococcus aureus protease V8. Virology 109:59–71
   [Google Scholar]
7. Chinchar V. G., Portner A. 1981b; Inhibition of RNA synthesis following proteolytic cleavage of Newcastle disease virus P protein. Virology 115:192–202
   [Google Scholar]
8. Cleveland D. W., Fischer S. G., Kirschner W. M., Laemmli U. K. 1977; Peptide mapping by limited proteolysis in sodium dodecyl sulfate and analysis by gel electrophoresis. Journal of Biological Chemistry 252:1102–1106
   [Google Scholar]
9. Collins P. L., Wertz G. W. 1985; Nucleotide sequences of the 1B and 1C nonstructural protein mRNAs of human respiratory syncytial virus. Virology 143:442–451
   [Google Scholar]
10. Collins P. L., Wertz G. W., Ball L. A., Hightower L. E. 1982; Coding assignments of the five smaller mRNAs of Newcastle disease virus. Journal of Virology 43:1024–1031
    [Google Scholar]
11. Collins P. L., Huang Y., Wertz G. W. 1984a; Nucleotide sequence of the gene encoding the fusion (F) glycoprotein of human respiratory syncytial virus. Proceedings of the National Academy of Sciences, U.S.A. 81:7683–7687
    [Google Scholar]
12. Collins P. L., Huang Y. T., Wertz G. W. 1984b; Identification of a tenth mRNA of respiratory syncytial virus and assignment of polypeptides to the 10 viral genes. Journal of Virology 49:572–578
    [Google Scholar]
13. Collins P. L., Anderson K., Langer S. J., Wertz G. W. 1985; Correct sequence for the major nucleocapsid protein mRNA of respiratory syncytial virus. Virology 146:69–77
    [Google Scholar]
14. Collins P. L., Dickens L. E., Buckler-White A., Olmsted R. A., Spriggs M. K., Camargo E., Coelingh K. V. W. 1986; Nucleotide sequences for the gene junctions of human respiratory syncytial virus reveal distinctive features of intergenic structure and gene order. Proceedings of the National Academy of Sciences, U.S.A. 83:4594–4598
    [Google Scholar]
15. Dayhoff M. 1978 Atlas of Protein Sequence and Structure vol 5 supplement 3 Washington, D,. C.: National Biomedical Research Foundation;
    [Google Scholar]
16. Deshpande K. L., Portner A. 1985; Monoclonal antibodies to the P protein of Sendai virus define its structure and role in transcription. Virology 140:125–134
    [Google Scholar]
17. Elango N., Coligan J. E., Jambou R. C., Venkatesan S. 1986; Human parainfluenza virus type 3 hemagglutinin-neuraminidase glycoprotein: nucleotide sequence of mRNA and limited amino acid sequence of CNBr peptides of the purified protein. Journal of Virology 57:481–489
    [Google Scholar]
18. Fields S., Winter G. 1982; Nucleotide sequences of influenza virus segments 1 and 3 reveal mosaic structure of a small viral RNA segment. Cell 28:303–313
    [Google Scholar]
19. Galinski M. S., Mink M. A., Lambert D. M., Wechsler S. L., Pons M. W. 1986; Molecular cloning and sequence analysis of the human parainfluenza virus RNA encoding the nucleocapsid protein. Virology 149:139–151
    [Google Scholar]
20. Gill D. S., Banerjee A. K. 1985; Vesicular stomatitis virus NS proteins: structural similarity without extensive sequence homology. Journal of Virology 55:60–66
    [Google Scholar]
21. Giorgi C., Blumberg B. M., Kolakofsky D. 1983; Sendai virus contains overlapping genes expressed from a single mRNA. Cell 35:829–836
    [Google Scholar]
22. Hamaguchi M., Yoshida T., Nishikawa K., Naruse H., Nagai Y. 1983; Transcriptive complex of Newcastle disease virus. I. Both L and P proteins are required to constitute an active complex. Virology 128:105–117
    [Google Scholar]
23. Herrler G., Compans R. W. 1982; Synthesis of mumps virus polypeptides in infected Vero cells. Virology 119:430–438
    [Google Scholar]
24. Hiebert S. W., Paterson R. G., Lamb R. A. 1985; Identification and predicted sequence of a previously unrecognized small hydrophobic protein, SH, of the paramyxovirus simian virus 5. Journal of Virology 55:744–751
    [Google Scholar]
25. Hightower L. E., Collins P. L., Smith G. W. 1984; Identification of a phosphorylated non-structural form of the P protein of Newcastle disease virus and analysis of P multimers. Journal of General Virology 65:1631–1636
    [Google Scholar]
26. Hsu C.-H., Kingsbury D. W. 1982; Topography of phosphate residues in Sendai virus proteins. Virology 120:225–234
    [Google Scholar]
27. Jambou R. C., Elango N., Venkatesan S. 1985; Proteins associated with human parainfluenza virus type 3. Journal of Virology 56:298–302
    [Google Scholar]
28. Jambou R. C., Elango N., Venkatesan S., Collins P. L. 1986; Complete sequence of the major nucleocapsid protein gene of human parainfluenza type 3 virus: comparison with other negative strand viruses. Journal of General Virology 67:2543–2548
    [Google Scholar]
29. Kolakofsky D., Curran J., Blumberg B., Giorgi C., Lamb R., Peterson R., Hiebert S., Venkatesan S., Elango N. 1986; Sequence comparison of paramyxovirus surface glycoproteins. In Biology of Negative Strand RNA Viruses Edited by Mahy J. B. W., Kolakofsky D. Amsterdam: Elsevier (in press);
    [Google Scholar]
30. Kozak M. 1986; Point mutations define a sequence flanking the AUG initiator codon that modulates translation by eukaryotic ribosomes. Cell 44:283–292
    [Google Scholar]
31. Kyte J., Doolittle R. F. 1982; A simple method for displaying the hydropathic character of a protein. Journal of Molecular Biology 157:105–132
    [Google Scholar]
32. Laemmli U. K. 1970; Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature, London 227:680–685
    [Google Scholar]
33. Maniatis T., Fritsch E. F., Sambrook J. 1982 Molecular Cloning: A Laboratory Manual New York: Cold Spring Harbor Laboratory;
    [Google Scholar]
34. Maxam A. M., Gilbert W. 1980; Sequencing end-labeled DNA with base-specific chemical cleavages. Methods in Enzymology 65:499–560
    [Google Scholar]
35. Morgan E. M., Re G. G., Kingsbury D. W. 1984; Complete sequence of the Sendai virus NP gene from a cloned insert. Virology 135:279–287
    [Google Scholar]
36. Paterson B. M., Roberts B. E., Kuff E. L. 1977; Structural gene identification and mapping by DNA-mRNA hybrid-arrested cell-free translation. Proceedings of the National Academy of Sciences, U.S.A. 74:4370–4374
    [Google Scholar]
37. Paterson R. G., Harris T. J. R., Lamb R. A. 1984; Analysis and gene assignment of mRNAs of a paramyxovirus, simian virus 5. Virology 138:310–323
    [Google Scholar]
38. Richardson C. D., Scheid A., Choppin P. W. 1980; Specific inhibition of paramyxovirus and myxovirus replication by oligopeptides with amino acid sequences to those at the N-termini of the F, or HA₂ viral polypeptides. Virology 105:205–222
    [Google Scholar]
39. Rozenblatt S., Eizenberg O., Ben-Levy R., Lavie V., Bellini W. 1985; Sequence homology within the morbilliviruses. Journal of Virology 53:684–690
    [Google Scholar]
40. Sanchez A., Banerjee A. K. 1985a; Studies on human parainfluenza virus 3: characterization of the structural proteins and in vitro synthesized proteins coded by mRNAs isolated from infected cells. Virology 143:45–54
    [Google Scholar]
41. Sanchez A., Banerjee A. K. 1985b; Coding and gene assignments of mRNAs of human parainfluenza virus 3. Virology 147:177–186
    [Google Scholar]
42. Satake M., Elango N., Venkatesan S. 1984; Sequence analysis of the respiratory syncytial virus phosphoprotein gene. Journal of Virology 52:891–894
    [Google Scholar]
43. Shioda T., Iwasaki K., Shibuta H. 1986; Determination of the complete nucleotide sequence of the Sendai virus genome RNA and the predicted amino acid sequences of the F, HN and L proteins. Nucleic Acids Research 14:1545–1563
    [Google Scholar]
44. Smith G. W., Hightower L. E. 1981; Identification of the P proteins and other disulfide-linked and phosphorylated proteins of Newcastle disease virus. Journal of Virology 37:256–267
    [Google Scholar]
45. Spriggs M. K., Collins P. L. 1986; Human parainfluenza virus type 3: messenger RNAs, polypeptide coding assignments, intergenic sequences and genetic map. Journal of Virology (in press)
    [Google Scholar]
46. Spriggs M. K., Olmsted R. A., Venkatesan S., Coligan J. E., Collins P. L. 1986; Fusion glycoprotein of human parainfluenza virus type 3: nuleotide sequence of the gene, direct identification of the cleavage activation site, and comparison with other paramyxoviruses. Virology 152:241–251
    [Google Scholar]
47. Storey D. G., Dimock K., Kang C. Y. 1984; Structural characterization of virion protein and genomic RNA of human parainfluenza virus 3. Journal of Virology 52:761–766
    [Google Scholar]
48. Varsanyi T., Jörnvall M., Norrby E. 1985; Isolation and characterization of the measles virus F₁ polypeptide: comparison with other paramyxovirus fusion proteins. Virology 147:110–117
    [Google Scholar]
49. Wechsler S. L., Lambert D. M., Galinski M. S., Pons M. W. 1985a; Intracellular synthesis of human parainfluenza type 3 virus specified polypeptides. Journal of Virology 54:661–664
    [Google Scholar]
50. Wechsler S. L., Lambert D. M., Galinski M. S., Heineke B. E., Pons M. W. 1985b; Human parainfluenza virus 3: purification and characterization of subviral components, viral proteins and viral RNA. Virus Research 3:339–351
    [Google Scholar]
51. Wertz G. W., Collins P. L., Huang Y., Gruber C., Levine S., Ball L. A. 1985; Nucleotide sequence of the G protein gene of human respiratory syncytial virus reveals an unusual type of viral membrane protein. Proceedings of the National Academy of Sciences, U.S.A. 82:4075–4079
    [Google Scholar]
52. Zagursky R. J., Baumeister K., Lomax N., Berman M. L. 1985; Rapid and easy sequencing oflarge linear double stranded DNA and supercoiled plasmid DNA. Gene Analysis Techniques 2:89–94
    [Google Scholar]