Draft genomes announcement of Vietnamese Xanthomonas euvesicatoria strains causing bacterial spot on pepper

References

1. Jones JB, Lacy GH, Bouzar H, Stall RE, Schaad NW. Reclassification of the xanthomonads associated with bacterial spot disease of tomato and pepper. Syst Appl Microbiol 2004; 27:755–762 [View Article] [PubMed]
   [Google Scholar]
2. Klein-Gordon JM, Xing Y, Garrett KA, Abrahamian P, Paret ML et al. Assessing changes and associations in the Xanthomonas perforans population across Florida commercial tomato fields via a statewide survey. Phytopathology 2021; 111:1029–1041 [View Article] [PubMed]
   [Google Scholar]
3. Potnis N, Timilsina S, Strayer A, Shantharaj D, Barak JD et al. Bacterial spot of tomato and pepper: diverse Xanthomonas species with a wide variety of virulence factors posing a worldwide challenge. Mol Plant Pathol 2015; 16:907–920 [View Article] [PubMed]
   [Google Scholar]
4. Subedi A, Minsavage GV, Jones JB, Goss EM, Roberts PD. Exploring diversity of bacterial spot associated Xanthomonas population of pepper in Southwest Florida. Plant Dis 2023; 107:2978–2985 [View Article] [PubMed]
   [Google Scholar]
5. Food and Agriculture Organization of the United Nations (FAO) FAOSTAT statistics database; 2021
6. ITC Trade Map; 2021 https://www.trademap.org
7. Bouzar H, Jones JB, Stall RE, Hodge NC, Minsavage GV et al. Physiological, chemical, serological, and pathogenic analyses of a worldwide collection of Xanthomonas campestris pv. vesicatoria strains. Phytopathology 1994; 84:663 [View Article]
   [Google Scholar]
8. Timilsina S, Pereira-Martin JA, Minsavage GV, Iruegas-Bocardo F, Abrahamian P et al. Multiple recombination events drive the current genetic structure of Xanthomonas perforans in Florida. Front Microbiol 2019; 10:448 [View Article] [PubMed]
   [Google Scholar]
9. Martin M. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet j 2011; 17:10 [View Article]
   [Google Scholar]
10. Prjibelski A, Antipov D, Meleshko D, Lapidus A, Korobeynikov A. Using SPAdes De Novo assembler. Curr Protoc Bioinformatics 2020; 70:e102 [View Article] [PubMed]
    [Google Scholar]
11. Langmead B, Salzberg SL. Fast gapped-read alignment with Bowtie 2. Nat Methods 2012; 9:357–359 [View Article] [PubMed]
    [Google Scholar]
12. Li H, Handsaker B, Wysoker A, Fennell T, Ruan J et al. The sequence alignment/map format and SAMtools. Bioinformatics 2009; 25:2078–2079 [View Article]
    [Google Scholar]
13. Walker BJ, Abeel T, Shea T, Priest M, Abouelliel A et al. Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement. PLoS One 2014; 9:e112963 [View Article] [PubMed]
    [Google Scholar]
14. Pritchard L, Cock P, Esen Ö. pyani v0. 2.8: average nucleotide identity (ANI) and related measures for whole genome comparisons; 2019
15. Tatusova T, DiCuccio M, Badretdin A, Chetvernin V, Nawrocki EP et al. NCBI prokaryotic genome annotation pipeline. Nucleic Acids Res 2016; 44:6614–6624 [View Article] [PubMed]
    [Google Scholar]
16. Bouzar H, Jones JB, Somodi GC, Stall RE, Daouzli N et al. Diversity of Xanthomonas campestris pv. vesicatoria in tomato and pepper fields of Mexico. Can J Plant Pathol 1996; 18:75–77 [View Article]
    [Google Scholar]
17. Hamza AA, Robène-Soustrade I, Boyer C, Laurent A, Jouen E et al. A new type of strain of Xanthomonas euvesicatoria causing bacterial spot of tomato and pepper in Grenada. Plant Dis 2010; 94:1264 [View Article] [PubMed]
    [Google Scholar]
18. Osdaghi E, Taghavi SM, Hamzehzarghani H, Lamichhane JR. Occurrence and characterization of the bacterial spot pathogen Xanthomonas euvesicatoria on pepper in Iran. J Phytopathol 2016; 164:722–734 [View Article]
    [Google Scholar]
19. Stoyanova M, Vancheva T, Moncheva P, Bogatzevska N. Differentiation of Xanthomonas spp. Causing bacterial spot in Bulgaria based on biolog system. Int J Microbiol 2014; 2014:495476 [View Article] [PubMed]
    [Google Scholar]