Genome sequence of the aurodox-producing bacterium Streptomyces goldiniensis ATCC 21386

References

1. Berger J, Lehr HH, Teitel S, Maehr H, Grunberg E. A New antibiotic x-5108 of streptomyces origin. J Antibiot 1973; 26:15–22 [View Article]
   [Google Scholar]
2. Parte AC, Sardà Carbasse J, Meier-Kolthoff JP, Reimer LC, Göker M. List of prokaryotic names with standing in nomenclature (LPSN) moves to the DSMZ. Int J Syst Evol Microbiol 2020; 70:5607–5612 [View Article] [PubMed]
   [Google Scholar]
3. Marusich WL, Ogrinz EF, Mitrovic M. A New Antibiotic, X-5108, for Improved Growth and Feed Conversion in Poultry. Poult Sci 1974; 53:936–945 [View Article]
   [Google Scholar]
4. Kimura K, Iwatsuki M, Nagai T, Matsumoto A, Takahashi Y et al. A small-molecule inhibitor of the bacterial type III secretion system protects against in vivo infection with Citrobacter rodentium. J Antibiot (Tokyo) 2011; 64:197–203 [View Article] [PubMed]
   [Google Scholar]
5. McHugh RE, O’Boyle N, Connolly JPR, Hoskisson PA, Roe AJ. Characterization of the Mode of Action of Aurodox, a Type III Secretion System Inhibitor from Streptomyces goldiniensis. Infect Immun 2019; 87:e00595-18 [View Article] [PubMed]
   [Google Scholar]
6. Hoskisson PA, Seipke RF. Cryptic or silent? the known unknowns, unknown knowns, and unknown unknowns of secondary metabolism. mBio 2020; 11:e02642-20 [View Article]
   [Google Scholar]
7. Chevrette MG, Gutiérrez-García K, Selem-Mojica N, Aguilar-Martínez C, Yañez-Olvera A et al. Evolutionary dynamics of natural product biosynthesis in bacteria. Nat Prod Rep 2020; 37:566–599 [View Article] [PubMed]
   [Google Scholar]
8. Fernández-Martínez LT, Hoskisson PA. Expanding, integrating, sensing and responding: the role of primary metabolism in specialised metabolite production. Curr Opin Microbiol 2019; 51:16–21 [View Article]
   [Google Scholar]
9. Kieser T, Bibb MJ, Buttner MJ, Chater KF, Hopwood D. Practical Streptomyces Genetics John Innes Foundation; 2000
   [Google Scholar]
10. Bolger AM, Lohse M, Usadel B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 2014; 30:2114–2120 [View Article] [PubMed]
    [Google Scholar]
11. Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M et al. SPAdes: A new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol 2012; 19:455–477 [View Article]
    [Google Scholar]
12. Alanjary M, Steinke K, Ziemert N. AutoMLST: an automated web server for generating multi-locus species trees highlighting natural product potential. Nucleic Acids Res 2019; 47:W276–W282 [View Article] [PubMed]
    [Google Scholar]
13. Bosi E, Donati B, Galardini M, Brunetti S, Sagot M-F et al. MeDuSa: a multi-draft based scaffolder. Bioinformatics 2015; 31:2443–2451 [View Article] [PubMed]
    [Google Scholar]
14. Gurevich A, Saveliev V, Vyahhi N, Tesler G. QUAST: quality assessment tool for genome assemblies. Bioinformatics 2013; 29:1072–1075 [View Article] [PubMed]
    [Google Scholar]
15. Seemann T. Prokka: rapid prokaryotic genome annotation. Bioinformatics 2014; 30:2068–2069 [View Article] [PubMed]
    [Google Scholar]
16. Blin K, Shaw S, Steinke K, Villebro R, Ziemert N et al. antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline. Nucleic Acids Res 2019; 47:W81–W87 [View Article] [PubMed]
    [Google Scholar]
17. Weber T, Laiple KJ, Pross EK, Textor A, Grond S et al. Molecular analysis of the kirromycin biosynthetic gene cluster revealed beta-alanine as precursor of the pyridone moiety. Chem Biol 2008; 15:175–188 [View Article] [PubMed]
    [Google Scholar]
18. McHugh RE, Munnoch JT, Braes RE, McKean IJW, Giard JM et al. Biosynthesis of aurodox, a Type III secretion system inhibitor from Streptomyces goldiniensis. bioRxiv [Preprint]2022.02.14.480342 2022 [View Article]
    [Google Scholar]
19. Stothard P, Wishart DS. Circular genome visualization and exploration using CGView. Bioinformatics 2005; 21:537–539 [View Article] [PubMed]
    [Google Scholar]