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Version 1: RSYD-BASIC: a bioinformatics pipeline for Routine Sequence analYsis and Data processing of BActerial iSolates for clInical miCrobiology Open Access

Abstract

Whole genome sequencing of bacterial isolates is increasingly becoming routine in clinical microbiology; however, subsequent analysis often needs to be started by a bioinformatician even for comprehensive pipelines.  With the RSYD-BASIC pipeline, we present a reads-to-results analysis pipeline operated by non-expert users that has already yielded clinically relevant results.

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Keyword(s): Bioinformatics , Clinical microbiology and whole genome sequencing
© 2023 The Authors
  • This is an open-access article distributed under the terms of the Creative Commons Attribution License.
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/content/journal/acmi/10.1099/acmi.0.000646.v1
2023-06-13
2024-09-17
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/content/journal/acmi/10.1099/acmi.0.000646.v1
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