- Volume 138, Issue 2, 1992
Volume 138, Issue 2, 1992
- Review Article
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- Biochemistry
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Purification and N-terminal amino acid sequence determination of the cell-wall-bound proteinase from Lactobacillus paracasei subsp. paracasei
More LessSUMMARY: The cell-wall-bound proteinase from Lactobacillus paracasei subsp. paracasei NCDO 151 was purified to homogeneity by anion-exchange and hydrophobic-interaction chromatography, chromatofocusing and gelfiltration. The purification resulted in a 600-700-fold increase in specific activity of the proteinase and the final yield was approximately 20%. Upon chromatofocusing, two proteolytically active components, termed pro 135 and pro110, were detected. pro135 had an isoelectric point of 4·2. It had an M r of about 300000 as determined by gelfiltration and 135000 as judged by SDS-PAGE, indicating that it may exist as a dimer in its native state, pro110 had an isoelectric point of 4·4, and an M r of about 150000 as determined by gel-filtration and 110000 as judged by SDS-PAGE. pro110 appears to be a degradation product of pro135 as they have the same N-terminal amino acid sequence. The first N-terminal amino acid was ambiguous for both components, whereas the sequence from the second to the ninth amino acid was Ala-Lys-Ala-Asn-Ser-Met-Ala-Asn. This is identical to the corresponding sequence of the lactococcal cell-wall-bound proteinases. Although the Lactobacillus proteinase was a little smaller than the lactococcal proteinase, their purification characteristics were very similar, suggesting that these proteinases are related.
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- Development And Structure
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The effect of DL-7-azatryptophan on heterocyst development in the cyanobacterium Anabaena cylindrica
More LessSUMMARY: Addition of the amino acid analogue dl-7-azatryptophan (AT) to dinitrogen-fixing cultures of the cyanobacterium Anabaena cylindrica, and to cultures in which heterocyst development was induced by the removal of fixed nitrogen from the medium, resulted in the development of many adjacent (double) heterocysts. Cell division in A. cylindrica was asymmetrical, with a maximum of 10% of all cell divisions producing two daughter cells of equal size. During incubation with AT the frequency of symmetrical cell divisions remained unchanged, indicating that the preponderance of double heterocysts induced by the analogue did not result from any change in the symmetry of cell division. Incubation of cultures with AT resulted in a decrease in the number of vegetative cells between heterocysts (the interheterocyst interval). The extent of the decrease was proportional to the length of the incubation period in the presence of AT. Double heterocysts, which constitute a zero interval, developed at a time when the minimum interval was three cells in dinitrogen-fixing cultures, or nine cells in cultures induced to differentiate by the removal of fixed nitrogen from the medium. These observations have been used to formulate a model to explain the influence of AT on the control of heterocyst development and spacing. In this model the inactive form of an inhibitor of heterocyst development is produced constitutively by vegetative cells and is activated either by a co-inhibitor derived from developing or mature heterocysts, or by high concentrations of fixed nitrogen.
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- Ecology
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Incorporation of CO2 and introduced organic compounds by bacterial populations in groundwater from the deep crystalline bedrock of the Stripa mine
More LessSUMMARY: The incorporation of CO2 and assimilation of introduced organic compounds by bacterial populations in deep groundwater from fractured crystalline bedrock has been studied. Three depth horizons of the subvertical borehole V2 in the Stripa mine, Sweden, 799-807 m, 812-820 m and 970-1240 m, were sampled. The groundwaters, obtained from fracture systems without close hydraulic connections, were anoxic and had the following physicochemical characteristics: pH values of 9·5, 9·4 and 10·2; E h values of + 205, + 199 and—3 mV; sulphide, 0, 106 and 233 μM; CO2- 3, 158, 50 and 57 μm; CH4, 245, 170 and 290 μl l-1; and N2, 25, 31 and 25 ml l-1. Biofilm reactors, each containing a series of parallel glass surfaces, were connected to the groundwaters issuing from these depth horizons at flows of approximately 1×10-3 m s-1 during two periods of two and four months. There were from 1·8×103 to 1·2×105 bacteria per ml groundwater and from 1·2×106 to 7·1×106 bacteria per cm2 of colonized test surface. These results imply that the populations of attached bacteria are several orders of magnitude greater than those of unattached bacteria in bedrock fractures with flowing groundwater. The incorporation of 14CO2, [14C]formate, [U-14C]lactate, [U-14C]glucose and l-[4,5-3H]leucine by the bacterial populations was demonstrated using microautoradiographic and liquid scintillation counting techniques. The measured CO2 incorporation reflected the in situ production of organic carbon from CO2. Incorporation of formate followed that of CO2 and indicated the presence of bacteria able to substitute formate for CO2, e.g. methanogenic bacteria. The presence of sulphate-reducing bacteria is suggested by the observed incorporation of lactate by up to 74% of the bacterial populations. The recorded uptake of glucose indicates the presence of heterotrophic bacteria other than sulphate-reducing bacteria. Up to 99% of the populations incorporated leucine, showing that major fractions of the populations were viable.
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- Genetics And Molecular Biology
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The Vi antigen of Salmonella typhi: molecular analysis of the viaB locus
More LessSUMMARY: Strains of Salmonella typhi isolated from the blood of patients with typhoid fever invariably express a capsular polysaccharide, termed the Vi antigen. Vi antigen expression is controlled by two separate chromosomal loci, viaA and viaB. The viaA locus is commonly found in enteric bacteria. In contrast, the viaB locus appears to be specific to Vi-expressing strains of Salmonella and Citrobacter. Here the cloning, expression and analysis of viaB determinants from S. typhi Ty2 is described. Whole-cell DNA from strain Ty2 was size-fractionated and cloned into the pLA2917 cosmid vector. A recombinant cosmid, pVT1, conferring a Vi-positive phenotype upon Escherichia coli and upon the Vi-non-expressing strain Ty21a of S. typhi, was characterized and used for further studies. Transposon Tn5 insertion mutagenesis demonstrated that the Vi-antigen-encoding region on pVT1 consisted of a 15 kb fragment. A subclone, designated pVT3, which contained an 18 kb insert, was sufficient to confer Vi antigen expression upon E. coli and S. typhi Ty21a. Results of recombination experiments indicated that this DNA sequence was the viaB locus of S. typhi Ty2. In E. coli SE5000 maxicells, the viaB determinants encoded at least eight polypeptides, with molecular masses of 80, 65, 59, 48, 44, 39, 35 and 28 kDa. Functional characterization of viaB mutations in S. typhi Ty2 suggested that the 80 and 65 kDa proteins were required for cell-surface localization of the Vi antigen.
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Cloning and structure of group C1 O antigen (rfb gene cluster) from Salmonella enterica serovar montevideo
More LessSUMMARY: The Salmonella enterica group C1 O antigen structure has a Man-Man-Man-Man-GlcNAc backbone with a glucose branch, which differs from the S. enterica group B O antigen structure which has a Man-Rha-Gal backbone with abequose as side-chain. We have cloned the group C1 rfb (O antigen) gene cluster from serovar montevideo strain M40, using a low-copy-number cosmid vector. The restriction map of the group C1 (M40) rfb gene cluster was compared with that of group B strain LT2 by Southern hybridization and restriction enzyme analysis. The results indicate that the flanking genes are very similar in the two strains, but there is no detectable similarity in the rfb regions. We localized the mannose pathway genes rfbM and rfbK and one of the genes, rfbK, shows considerably similarity to cpsG of strain LT2, suggesting that part of the mannose pathway in the group C1 rfb cluster is derived from a gene of the M antigen (cps) cluster. The M antigen, which forms a capsule, is comprised of four sugars, including fucose. The biosynthetic pathway of GDP-fucose has steps in common with the GDP-mannose pathway, and the cps cluster has isogenes of rfbK and rfbM, presumably as part of a fucose pathway. We discuss the structure and possible evolution of the group C1 rfb gene cluster.
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Expression of Bacillus amyloliquefaciens amylase and Vibrio alginolyticus protease A fusion genes
More LessSUMMARY: Previously we reported [Deane, S. M., Maharaj, R., Robb, F. T. & Woods, D. R. (1987) Journal of General Microbiology 133, 2295-2302] that the production of a Vibrio alginolyticus SDS-resistant alkaline serine protease (Pro A) cloned in Escherichia coli was characterized by a 12 h delay between the synthesis of an inactive precursor and secretion of active Pro A. Replacement of the V. alginolyticus promoter region by the α-amylase promoter region from Bacillus amyloliquefaciens resulted in the simultaneous synthesis and secretion of Pro A in E. coli. The V. alginolyticus proA gene cloned on a shuttle vector did not produce active Pro A in Bacillus subtilis. Although Pro A has a typical Gram-positive signal sequence, it was not functional in B. subtilis. Replacement of the Pro A signal sequence with the α-amylase signal sequence resulted in the production of active Pro A in B. subtilis.
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Characterization of a circular plasmid from the yeast Kluyveromyces waltii
More LessSUMMARY: A new plasmid was found in the yeast Kluyveromyces waltii. This high-copy-number plasmid, named pKW1, is a double-stranded circular DNA plasmid of 5619 bp. It has several features characteristic of the 2μ-type plasmids: presence of two inverted repeats and four open reading frames, as well as the interconversion of two isomeric forms. However, the nucleotide sequence shows little homology with known yeast plasmids. An ARS function was localized within a segment of 545 bp near one of the inverted repeats. Chimeric plasmids carrying this segment efficiently transformed K. waltii. A strain of K. waltii cured of the plasmid (cir ⚬) was also obtained. In the pKW1 sequence, a functionally neutral region was found at which foreign DNA can be inserted with little effect on plasmid stability. Such constructions carrying the full sequence of pKW1 replicated autonomously in a cir ⚬ host and were particularly stable. pKW1-derived full-sequence plasmids also transformed K. thermotolerans, but not K. lactis.
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Increased dosage of a transcriptional activator gene enhances iron-limited growth of Saccharomyces cerevisiae
More LessSUMMARY: We have selected for genes that, when present in multiple copies, enhance growth of wild-type cells of Saccharomyces cerevisiae in an iron-limiting medium. A gene designated FUP1, for ‘ferric utilization proficient’, was isolated by this approach. Increased dosage of FUP1 reduces the concentration of iron in the medium required for efficient growth and confers elevated levels of iron uptake activity in iron-limited cells. Disruption of the FUP1 locus reduces wild-type iron uptake rates by 2-fold in cells grown on raffinose medium but has no effect on glucose-grown cells. DNA sequencing showed that FUP1 encodes a hydrophilic 43 kDa protein identical to MSN1, a gene encoding a transcriptional activator implicated in carbon source regulation. Our results suggest that FUP1/MSN1 also regulates synthesis of gene products involved in iron uptake.
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The glnA gene of the extremely thermophilic eubacterium Thermotoga maritima: cloning, primary structure, and expression in Escherichia coli
More LessSUMMARY: The structural gene (glnA) encoding the glutamine synthetase (GS) of the extremely thermophilic eubacterium Thermotoga maritima has been cloned on a 6·0 kb HindIII DNA fragment. Sequencing of the region containing the glnA gene (1444 bp) showed an ORF encoding a polypeptide (439 residues) with an estimated mass of 50088 Da, which shared significant homology with the GSI sequences of other Bacteria (Escherichia coli, Bacillus subtilis) and Archaea (Pyrococcus woesei, Sulfolobus solfataricus). The T. maritima glnA gene was expressed in E. coli, as shown by the ability to complement a glnA lesion in the glutamine-auxotrophic strain ET8051. The recombinant GS has been partially characterized with respect to the temperature dependence of enzyme activity, molecular mass and mode of regulation. The molecular mass of the Thermotoga GS (590000 Da), estimated by gel filtration, was compatible with a dodecameric composition for the holoenzyme, as expected for a glutamine synthetase of the GSI type. Comparison of the amino acid sequence of T. maritima GS with those from thermophilic and mesophilic micro-organisms failed to detect any obvious features directly related to thermal stability.
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- Immunology
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Variable cross-reactivity of Pseudomonas aeruginosa lipopolysaccharide-core-specific monoclonal antibodies and its possible relationship with serotype
More LessSUMMARY: The core region of Pseudomonas aeruginosa lipopolysaccharide (LPS) was analysed by four LPS-core-specific human monoclonal antibodies (mAbs; FK-2E7, MH-4H7, OM-1D6 and NM-3G8). Reactivity of these mAbs to about 180 P. aeruginosa strains was tested. FK-2E7 bound to strains of Homma serotype E and I at a frequency of about 90%, to strains of serotype M at about 50%, and to strains of serotype A and G at about 30%. MH-4H7 bound to P. aeruginosa strains of serotype A, F, G, H, K and M at a high frequency (45-87%), but did not bind to any strains of serotype B, C, E and I. OM-1D6 and NM-3G8 bound to P. aeruginosa strains in a nearly serotype-specific manner. OM-1D6 reacted with all strains of serotype G so far tested, and a few strains of serotype M. Furthermore, L-rhamnose in the LPS core of serotype G was an immunodominant sugar recognized by OM-1D6 as an epitope. NM-3G8 bound to only a few strains of serotype B and M. The variable reactivity of these mAbs suggests that antigenic heterogeneity of the LPS core is somewhat related with (O-polysaccharide-based) serotype. Among these mAbs, MH-4H7 and OM-1D6 showed a high level of protective activity against P. aeruginosa in an experimental infection model using normal mice. In vivo protective activity was shown to be closely related to in vitro binding activity to whole cells as determined by agglutination and flow cytometry, but not ELISA.
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- Pathogenicity And Medical Microbiology
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Enterotoxic effects of Aeromonas sobria haemolysin in a rat jejunal perfusion system identified by specific neutralization with a monoclonal antibody
More LessSUMMARY: Investigations into the pathogenesis of Aeromonas diarrhoea have demonstrated that several different cell-free products of motile aeromonads show enterotoxic activity in suckling mouse, rat, and rabbit assay systems. The relative contributions made by separate cytotoxic and cytotonic activities in the mixture produced by in vitro culture remains unresolved. Using a modified rat jejunal perfusion assay, we have studied the effects of A. sobria culture filtrates containing defined levels of haemolytic and cytotoxic activity and immunoreactivity for anticholera toxin. This material induced net water, potassium, and sodium loss with a rapid onset (>5 min) that was readily differentiated from the effects of purified cholera toxin (< 15 min). In filtrates containing up to 128 haemolytic and cytotoxic units of activity, the enterotoxic activity was neutralized by an anti-haemolysin/cytotoxin monoclonal antibody. No specific histological changes could be found in preparations perfused with enterotoxic material for up to 65 min. These findings indicate that the cytotoxic/haemolytic component of A. sobria culture filtrate is the dominant enterotoxic activity.
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Purification and properties of extracellular mutacin, a bacteriocin from Streptococcus sobrinus
More LessSUMMARY: Mutacin MT6223, a cell-free bacteriocin produced by Streptococcus sobrinus MT6223, was purified by ammonium sulphate precipitation, chromatofocusing with PBE 94 and column chromatography on SP Sephadex C-25. The specific activity of the purified mutacin was increased 1950-fold with a recovery of 9·7%. The molecular mass of the purified mutacin preparation was estimated to be 6·5 kDa. The mutacin activity was stable from pH 2-7, and was resistant to treatment at 100 °C for 20 min. It was inactivated by papain or ficin digestion, and was partially inhibited by α-chymotrypsin. The mutacin was found to be active against strains of serotypes c, e and f of Streptococcus mutans and the addition of purified mutacin MT6223 to growing cells of S. mutans MT8148 resulted in a rapid inhibition of incorporation of [3H]thymidine, [3H]uracil or L-[3H]glutamic acid into DNA, RNA or protein, respectively. Specific pathogen-free Fischer rats fed diet 2000 and infected with S. mutans MT8148R showed significantly fewer caries and lower plaque scores when mutacin was administered through drinking water. The present study demonstrates that mutacin MT6223 inhibited the growth of mutans streptococci. Thus, mutacin MT6223 may be a candidate for use in dental caries prevention.
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Characterization of the chloramphenicol acetyltransferase variants encoded by the plasmids pSCS6 and pSCS7 from Staphylococcus aureus
More LessSUMMARY: The two 4·6 kb chloramphenicol resistance (CmR) plasmids pSCS6 and pSCS7, previously identified in Staphylococcus aureus from subclinical bovine mastitis, both encoded an inducible chloramphenicol acetyltransferase (CAT, EC 2.3.1.28). The pSCS6- and pSCS7-encoded CAT variants were purified by ammonium sulphate precipitation, ion-exchange chromatography and fast protein liquid chromatography (FPLC). Both native enzymes showed M r values of 70000 on FPLC and were composed of three identical subunits, each of M r approximately 23000. The CAT variants from pSCS6 and pSCS7 differed in their net charges and in their isoelectric points. The isoelectric point of the CAT from pSCS6 was pH 5·7 and that of the CAT from pSCS7 pH 5·2. Both CAT variants exhibited highest enzyme activities at pH 8·0. The K m values for chloramphenicol and acetyl-CoA of the CAT from pSCS6 were 2·5 μM and 58·8 μM, respectively, while those of the CAT from pSCS7 were 2·7 μM and 55·5 μM. Both CAT variants were relatively thermostable. The CAT from pSCS6 was less sensitive to mercuric ions than the CAT from pSCS7.
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Antigenic analysis of iron-regulated proteins in Pasteurella haemolytica A and T biotypes by immunoblotting reveals biotype-specific epitopes
More LessSUMMARY: The antigenic relationships of the iron-regulated proteins (IRPs) in Pasteurella haemolytica A and T biotype strains were examined by SDS-PAGE and immunoblotting. P. haemolytica cells of the A biotype, grown under conditions of iron-limitation, expressed two IRPs, of 35 and 70 kDa. All T biotype strains expressed IRPs with slightly different molecular masses of 37 and 78 kDa. Immunoblotting of all 16 P. haemolytica serotypes was carried out using a panel of polyclonal and monoclonal antibodies raised against serotype A2 antigens. Polyclonal antibodies revealed inter-serotype cross-reactivity towards the 35 and 70 kDa IRPs within the A biotype but no cross-reactivity against a T biotype protein in the 78 kDa region. Monoclonal antibody against the 35 kDa antigen reacted only with the A biotype 35 kDa IRP. Identical profiles were obtained for 10 field isolates of serotype A2, further emphasizing the antigen conservation within the A biotype. These findings reinforce the view that the A and T biotypes of P. haemolytica should be considered as separate species and suggest that IRPs from single A and T biotype strains incorporated into a vaccine might provide cross-protection against all P. haemolytica serotypable strains. Similar studies on the IRPs of 10 untypable strains revealed some of these to have different antigenic reactivities from those observed within the A and T biotypes.
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- Physiology And Growth
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Inducibility of the response of yeast cells to peroxide stress
More LessSUMMARY: Exponential phase cells of the yeast Saccharomyces cerevisiae when treated with a non-lethal concentration of hydrogen peroxide (H2O2; 0.2 mM) for 60 min adapted to become resistant to the lethal effects of a higher dose of H2O2 (2 mM). From studies using cycloheximide to inhibit protein synthesis it appears that protein synthesis is required for maximal induction of resistance but that some degree of protection from the lethal effects of peroxide can be acquired in the absence of protein synthesis. Treatment of cells with 50 μg cycloheximide ml-1 alone led to them acquirng some protection from peroxide. Cells subjected to heat shock became more resistant to 2 mM-H2O2; however, peroxide pretreatment did not confer thermotolerance. L-[35S]Methionine labelling of cells subjected to 0.2 mM-H2O2 stress showed that synthesis of at least ten polypeptides was induced by peroxide treatment. Some of these were also induced in cells subjected to heat shock (23 to 37 °C shift) but the synthesis of at least four polypeptides (45, 39.5, 38 and 24 kDa) was unique to peroxide-stressed cells. Resistance to peroxide was also inducible in an isogenic petite and an isogenic strain with a mutation in the HAP1 gene, indicating that the adaptive response does not require functional mitochondria.
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Glucosylglycerol accumulation during salt acclimation of two unicellular cyanobacteria
More LessSUMMARY: A turbidostat culture technique was used to study the effects of different salt shocks on the freshwater cyanobacteria Synechocystis sp. strain PCC 6803 and Microcystis firma. Shocks were performed either suddenly or gradually, on both unacclimated cultures and those pre-acclimated to 0·77 M-NaCl. All suddenly shocked cultures exhibited a decline in growth after a few hours, characterized by severely decreased metabolic activities (e.g. photosynthesis, respiration, glucose-6-phosphate dehydrogenase activity) and a time course of restoration which coincided with the accumulation of glucosylglycerol. Additionally, all untreated cultures had a late (after a few days) growth depression, distinguished by the stagnation of cell division. This was overcome by physiological adaptation of the whole cells or selection of cells with superior salt tolerance. The different types of growth depressions and the unique pattern of glucosylglycerol accumulation led to the conclusion that glucosylglycerol was necessary to maintain metabolic processes, but that this alone cannot account for successful salt acclimation.
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Indole-3-acetic acid (IAA) production by Arthrobacter species isolated from Azolla
More LessSUMMARY: Arthrobacter species, isolated from the leaf cavities and the microsporocarps of the aquatic fern species Azolla pinnata and Azolla filiculoides, produced indole-3-acetic acid (IAA) in culture when the precursor tryptophan was added to the medium. No IAA production was detected in the absence of tryptophan. Maximum IAA formation was obtained in the first 2 d of incubation. Part of the tryptophan was transformed to Nα-acetyl-L-tryptophan.
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- Systematics
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Small subunit ribosomal RNA of Blastomyces dermatitidis: sequence and phylogenetic analysis
More LessSUMMARY: We determined the small subunit (18S) ribosomal RNA sequence of the dimorphic fungus Blastomyces dermatitidis. The sequence was compared to that of fourteen other eukaryotic organisms, ten of which were higher fungi, and an evolutionary tree was constructed based on these sequences. B. dermatitidis aligned most closely with the Ascomycetes Neurospora crassa and Podospora anserina, in agreement with previous phylogenetic analysis based on morphological criteria. Phase-specific cDNA clones derived by reverse transcription of RNA isolated from the yeast and mycelial phases of B. dermatitidis were also sequenced. The 18S ribosome sequence was found to be the same in both phases. Heterogeneity was found at both the genomic and RNA level at position 1352.
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Phylogenetic analysis of some Aerococcus-like organisms from urinary tract infections: description of Aerococcus urinae sp. nov.
More LessSUMMARY: Partial 16S ribosomal ribonucleic acid sequences of five Aerococcus-like organisms originally isolated from patients with urinary tract infections were determined using reverse transcriptase in order to clarify their taxonomic position. Analysis of the sequence data revealed that the clinical isolates represent a hitherto unknown line of descent within the genus Aerococcus. A new species, Aerococcus urinae, is proposed for these isolates. The type strain is NCFB 2893.
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