Interaction between NifL and NifA in the nitrogen-fixing Pseudomonas stutzeri A1501

References

1. Allen L. N, Hanson R. S. 1985; Construction of broad-host-range cosmid cloning vectors: identification of genes necessary for growth of Methylobacterium organophilum on methanol. J Bacteriol 161:955–962
   [Google Scholar]
2. Blanco G, Drummond M, Woodley P, Kennedy C. 1993; Sequence and molecular analysis of the nifL gene of Azotobacter vinelandii . Mol Microbiol 9:869–879 [CrossRef]
   [Google Scholar]
3. Buchanan-Wollaston V, Cannon M. C, Cannon F. C. 1981; The use of cloned nif (nitrogen fixation) DNA to investigate transcriptional regulation of nif expression in K. pneumoniae . Mol Gen Genet 184:102–106 [CrossRef]
   [Google Scholar]
4. Chan Y. K, Barraquio W. L, Knowles R. 1994; N₂-fixing Pseudomonas and related soil bacteria. FEMS Microbiol Rev 13:95–117 [CrossRef]
   [Google Scholar]
5. Chen S, Liu L, Zhou X, Elmerich C, Li J.-L. 2005; Functional analysis of the GAF domain of NifA in Azospirillum brasilense : effects of Tyr-Phe mutations on NifA and its interaction with GlnB. Mol Genet Genomics 273:415–422 [CrossRef]
   [Google Scholar]
6. Desnoues N, Lin M, Guo X, Ma L, Elmerich C, Carreño-Lopez R. 2003; Nitrogen fixation genetics and regulation in a Pseudomonas stutzeri strain associated with rice. Microbiology 149:2251–2262 [CrossRef]
   [Google Scholar]
7. Egener T, Sarkar A, Martin D. E, Reinhold-Hurek B. 2002; Identification of a NifL-like protein in a diazotroph of the beta-subgroup of the Proteobacteria, Azoarcus sp. strain BH72. Microbiology 148:3203–3212
   [Google Scholar]
8. Filser M, Merrick M, Cannon F. 1983; Cloning and characterization of nifLA regulatory mutations from Klebsiella pneumoniae . Mol Gen Genet 191:485–491 [CrossRef]
   [Google Scholar]
9. Hasan M. K, Yaguchi T, Minoda Y, Hirano T, Taira K, Wadhwa R, Kaul S. C. 2004; Alternative reading frame protein (ARF)-independent function of CARF (collaborator of ARF) involves its interactions with p53: evidence for a novel p53-activation pathway and its negative feedback control. Biochem J 380:605–610 [CrossRef]
   [Google Scholar]
10. He L, Ninfa A, Kustu S, Soupène E. 1998; Physiological role for the GlnK protein of enteric bacteria: relief of NifL inhibition under nitrogen-limiting conditions. J Bacteriol 180:6661–6667
    [Google Scholar]
11. James P, Halladay J, Craig E. A. 1996; Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast. Genetics 144:1425–1436
    [Google Scholar]
12. Lalucat J, Bennasar A, Bosch R, García-Valdés E, Palleroni N. J. 2006; Biology of Pseudomonas stutzeri . Microbiol Mol Biol Rev 70:510–547 [CrossRef]
    [Google Scholar]
13. Lee H. S, Berger D. K, Kustu S. 1993; Activity of purified NIFA, a transcriptional activator of nitrogen fixation genes. Proc Natl Acad Sci U S A 90:2266–2270 [CrossRef]
    [Google Scholar]
14. Lei S, Pulakat L, Gavini N. 1999; Genetic analysis of nif regulatory genes by utilizing the yeast two-hybrid system detected formation of a NifL-NifA complex that is implicated in regulated expression of nif genes. J Bacteriol 181:6535–6539
    [Google Scholar]
15. Liao G. X, Yu G. Q, Shen S. J. 2002; Use of bacterial two-hybrid system to investigate the molecular interaction between the regulators NifA and NifL of Enterobacter cloacae . Sci China C 45:569–576
    [Google Scholar]
16. Lin M, Smalla K, Heuer H, van Elsas J. D. 2000; Effect of an Alcaligenes faecalis inoculant strain on bacterial communities in flooded microcosms planted with rice seedlings. Appl Soil Ecol 15:211–225 [CrossRef]
    [Google Scholar]
17. Martínez-Argudo I, Salinas P, Maldonado R, Contreras A. 2002; Domain interactions on the ntr signal transduction pathway: two-hybrid analysis of mutant and truncated derivatives of histidine kinase NtrB. J Bacteriol 184:200–206 [CrossRef]
    [Google Scholar]
18. Martínez-Argudo I, Little R, Shearer N, Johnson P, Dixon R. 2004; The NifL-NifA system: a multidomain transcriptional regulatory complex that integrates environmental signals. J Bacteriol 186:601–610 [CrossRef]
    [Google Scholar]
19. Merrick M. J. 2004; Regulation of nitrogen fixation in free-living diazotrophs. In Genetics and Regulation of Nitrogen Fixation in Free-Living Bacteria Edited by Klipp W., Masepohl B., Gallon J. P., Newton W. E. The Netherlands: Kluwer Academic;
    [Google Scholar]
20. Miller J. 1972; Assay for β -galactosidase. In Experiments in Molecular Genetics pp.  352–355 Cold Spring Harbor, NY: Cold Spring Harbor Laboratory;
    [Google Scholar]
21. Morett E, Segovia L. 1993; The σ ⁵⁴ bacterial enhancer-binding protein family: mechanism of action and phylogenetic relationship of their functional domains. J Bacteriol 175:6067–6074
    [Google Scholar]
22. Pawlowski A, Riedel K. U, Klipp W, Dreiskemper P, Gross S, Beirhoff H, Drepper T, Masepohl B. 2003; Yeast two hybrid studies on interaction of proteins involved in regulation of nitrogen fixation in the phototrophic bacterium Rhodobacter capsulatus . J Bacteriol 185:5240–5247 [CrossRef]
    [Google Scholar]
23. Rediers H, Vanderleyden J, Mot R. D. 2004; Azotobacter vinelandii : a Pseudomonas in disguise?. Microbiology 150:1117–1119 [CrossRef]
    [Google Scholar]
24. Rudnick P, Kunz C, Gunatilaka M. K, Hines E. R, Kennedy C. 2002; Role of GlnK in NifL-mediated regulation of NifA activity in Azotobacter vinelandii . J Bacteriol 184:812–820 [CrossRef]
    [Google Scholar]
25. Sambrook J, Russell D. W. 2001 Molecular Cloning: a Laboratory Manual , 3rd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory;
26. Simon R, Priefer U, Pühler A. 1983; A broad host range mobilization system for in vivo genetic engineering: transposon mutagenesis in Gram-negative bacteria. Biotechnology 1:784–791 [CrossRef]
    [Google Scholar]
27. Stips J, Thummer R, Neumann M, Schmitz R. A. 2004; GlnK effects complex formation between NifA and NifL in Klebsiella pneumoniae . Eur J Biochem 271:3379–3388 [CrossRef]
    [Google Scholar]
28. Studholme D, Dixon R. 2003; Domain architectures of σ ⁵⁴-dependent transcriptional activators. J Bacteriol 185:1757–1767 [CrossRef]
    [Google Scholar]
29. Vermeiren H, Willems A, Schoofs G, Keijers V, Hai W, Vanderleyden J, de Mot R. 1999; The rice inoculant strain A15 is a nitrogen-fixing Pseudomonas stutzeri strain. Syst Appl Microbiol 22:215–224 [CrossRef]
    [Google Scholar]
30. You C. B, Song H. X, Wang J. P, Lin M, Hai W. L. 1991; Association of Alcaligenes faecalis with wetland rice. Plant Soil 137:81–85 [CrossRef]
    [Google Scholar]
31. Zhulin I. B, Taylor B. L, Dixon R. 1997; PAS domain S-boxes in Archaea, Bacteria and sensors for oxygen and redox. Trends Biochem Sci 22:331–333 [CrossRef]
    [Google Scholar]