1887

Abstract

The major outer-membrane protein of , OprF, is multifunctional. It is a non-specific porin that plays a role in maintenance of cell shape, in growth in a low-osmolarity environment, and in adhesion to various supports or molecules. OprF has been studied extensively for its utility as a vaccine component, its role in antimicrobial drug resistance, and its porin function. The authors have previously shown important differences between the OprF and 16S rDNA phylogenies: isolates split into two quite separate clusters, probably according to their ecological niche. In this study, the evolutionary history of the gene was investigated further. The study of G+C content at the third codon position, synonymous codon usage (codon adaptation index, CAI) and genomic context showed no evidence of horizontal transfer or gene duplication. Similarly, a robust likelihood test of incongruence showed no significant incongruence between the phylogeny and the species phylogeny. In addition, the ratio of nonsynonymous mutations to synonymous mutations ( / ) is high between the different clusters, especially between the two clusters containing isolates, highlighting important modifications in evolutionary constraints during the history of the gene. Since OprF is known as a pleiotropic protein, modifications in evolutionary constraints could have resulted from variations in cryptic functions, correlated with the ecological fingerprint. Finally, relaxed constraints and/or episodic positive evolution, especially for some strains, could have led to a phylogeny reconstruction artifact.

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2006-04-01
2020-04-04
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