1887

Abstract

The phosphofructokinase from the non-conventional yeast (YlPfk) was purified to homogeneity, and its encoding gene isolated. YlPfk is an octamer of 869 kDa composed of a single type of subunit, and shows atypical kinetic characteristics. It did not exhibit cooperative kinetics for fructose 6-phosphate (Hill coefficient, 1·1; 52 μM), it was inhibited moderately by MgATP ( 3·5 mM), and it was strongly inhibited by phosphoenolpyruvate ( 61 μM). Fructose 2,6-bisphosphate did not activate the enzyme, and AMP and ADP were also without effect. The gene has no introns, and encodes a putative protein of 953 aa, with a molecular mass consistent with the subunit size found after purification. Disruption of the gene abolished growth in glucose and Pfk activity, while reintroduction of the gene restored both properties. This indicates that has only one gene encoding Pfk, and supports the finding that the enzyme consists of identical subunits. Glucose did not interfere with growth of the disruptant in permissive carbon sources. The unusual kinetic characteristics of YlPfk, and the intracellular concentrations of glycolytic intermediates during growth in glucose, suggest that YlPfk may play an important role in the regulation of glucose metabolism in , different from the role played by the enzyme in .

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2005-05-01
2024-04-24
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References

  1. Ammerer G. 1983; Expression of genes in yeast using the ADCI promoter. Methods Enzymol 101:192–201
    [Google Scholar]
  2. Aragón J. J., Sánchez V., Boto L. 1986; Fructose 2,6-bisphosphate in Dictyostelium discoideum. Independence of cyclic AMP production and inhibition of fructose-1,6-bisphosphatase. Eur J Biochem 161:757–761 [CrossRef]
    [Google Scholar]
  3. Arts E., Kubicek C. P., Rohr M. 1987; Regulation of phosphofructokinase from Aspergillus niger: effect of fructose 2,6-bisphosphate on the action of citrate, ammonium ions and AMP. J Gen Microbiol 133:1195–1199
    [Google Scholar]
  4. Bañuelos M., Gancedo C., Gancedo J. M. 1977; Activation by phosphate of yeast phosphofructokinase. J Biol Chem 252:6394–6398
    [Google Scholar]
  5. Bär J., Schellenberger W., Kopperschläger G. 1997; Purification and characterization of phosphofructokinase from the yeast Kluyveromyces lactis. Yeast 13:1309–1317 [CrossRef]
    [Google Scholar]
  6. Barth G., Gaillardin C. 1996; Yarrowia lipolytica. In Non-Conventional Yeasts in Biotechnology. A Handbook pp 313–388 Edited by Wolf K. New York, NY: Springer;
    [Google Scholar]
  7. Barth G., Scheuber T. 1993; Cloning of the isocitrate lyase gene (ICL1) from Yarrowia lipolytica and characterization of the deduced protein. Mol Gen Genet 24:422–430
    [Google Scholar]
  8. Becker D. M., Fikes J. D., Guarente L. 1991; A cDNA encoding a human CCAAT-binding protein cloned by functional complementation in yeast. Proc Natl Acad Sci U S A 8:1968–1972
    [Google Scholar]
  9. Belinchón M. M., Flores C. L., Gancedo J. M. 2004; Sampling Saccharomyces cerevisiae cells by rapid filtration improves the yield of mRNAs. FEMS Yeast Res 4:751–756 [CrossRef]
    [Google Scholar]
  10. Bergmeyer H. U., Bergmeyer J., Graßl M. 1987 Methods of Enzymatic Analysis, 3rd edn. vols VI and VII Weinheim: VCH;
    [Google Scholar]
  11. Blangy D., Buc H., Monod J. 1968; Kinetics of the allosteric interactions of phosphofructokinase from Escherichia coli . J Mol Biol 31:13–35 [CrossRef]
    [Google Scholar]
  12. Bradford M. M. 1976; A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein–dye binding. Anal Biochem 72:248–254 [CrossRef]
    [Google Scholar]
  13. Breitenbach-Schmitt I., Schmitt H. D., Heinisch J., Zimmermann F. K. 1984; Genetic and physiological evidence for the existence of a second glycolytic pathway in yeasts parallel to the phosphofructokinase–aldolase reaction sequences. Mol Gen Genet 195:536–540 [CrossRef]
    [Google Scholar]
  14. Carlson M. 1999; Glucose repression in yeast. Curr Opin Microbiol 2:202–207 [CrossRef]
    [Google Scholar]
  15. Ciriacy M., Breitenbach I. 1979; Physiological effects of seven different blocks in glycolysis in Saccharomyces cerevisiae. J Bacteriol 139:152–160
    [Google Scholar]
  16. Davies S. E. C., Brindle K. M. 1992; Effects of overexpression of phosphofructokinase on glycolysis in the yeast Saccharomyces cerevisiae. Biochemistry 31:4729–4735 [CrossRef]
    [Google Scholar]
  17. Djafarzadeh R., Kerscher S., Zwicker K., Radermacher M., Lindahl M., Schagger H., Brandt U. 2000; Biophysical and structural characterization of proton-translocating NADH-dehydrogenase (complex I) from the strictly aerobic yeast Yarrowia lipolytica . Biochim Biophys Acta 1459230–238 [CrossRef]
    [Google Scholar]
  18. Domínguez A., Fermiñán E., Gaillardin C. 2000; Yarrowia lipolytica: an organism amenable to genetic manipulation as a model for analysing dimorphism in fungi. In Contributions to Microbiology vol 5 pp 151–162 Edited by Ernst J. F., Schmidt A. Basel, Switzerland: Karger;
    [Google Scholar]
  19. Dujon B., Sherman D., Durrens P. & 63 other authors; 2004; Genome evolution in yeasts. Nature 430:35–44 [CrossRef]
    [Google Scholar]
  20. Flores C.-L., Gancedo C. 2005; Yarrowia lipolytica mutants devoid of pyruvate carboxylase activity show an unusual growth phenotype. Eukaryot Cell 4:356–364 [CrossRef]
    [Google Scholar]
  21. Flores C.-L., Rodriguez C., Petit T., Gancedo C. 2000; Carbohydrate and energy-yielding metabolism in non-conventional yeasts. FEMS Microbiol Rev 24:507–529 [CrossRef]
    [Google Scholar]
  22. Gaillardin C., Ribet A. M. 1987; LEU2-directed expression of β-galactosidase activity and phleomycin resistance in Yarrowia lipolytica. Curr Genet 11:369–375 [CrossRef]
    [Google Scholar]
  23. Gamo F. J., Portillo F., Gancedo C. 1993; Characterization of mutations that overcome the toxic effect of glucose on phosphoglucose isomerase less strains of Saccharomyces cerevisiae. FEMS Microbiol Lett 106:233–238 [CrossRef]
    [Google Scholar]
  24. Gancedo J. M. 1998; Yeast carbon catabolite repression. Microbiol Mol Biol Rev 62:334–361
    [Google Scholar]
  25. González-Mateos F., Gómez M.-E., García-Salguero L., Sánchez V., Aragón J. J. 1993; Inhibition of glycolysis by amino acids in ascites tumor cells. Specificity and mechanism. J Biol Chem 268:7809–7817
    [Google Scholar]
  26. Habison A., Kubicek C. P., Rohr M. 1983; Partial purification and regulatory properties of phosphofructokinase from Aspergillus niger. Biochem J 209:669–676
    [Google Scholar]
  27. Heinisch J., Ritzel R. G., von Borstel R. C., Aguilera A., Rodicio R., Zimmermann F. K. 1989; The phosphofructokinase genes of yeast evolved from two duplication events. Gene 78:309–321 [CrossRef]
    [Google Scholar]
  28. Heinisch J., Kirchrath L., Liesen T., Vogelsang K., Hollenberg C. P. 1993; Molecular genetics of phosphofructokinase in the yeast Kluyveromyces lactis. Mol Microbiol 8:559–570 [CrossRef]
    [Google Scholar]
  29. Higgins D., Thompson J., Gibson T., Thompson J. D., Higgins D. G., Gibson T. J. 1994; clustal w: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–4680 [CrossRef]
    [Google Scholar]
  30. Hirai M., Tanaka A., Fukui S. 1975; Difference in pyruvate kinase regulation among three groups of yeasts. Biochim Biophys Acta 391:282–291 [CrossRef]
    [Google Scholar]
  31. Hoffman C. S., Winston F. 1987; A ten-minute DNA preparation from yeast efficiently releases autonomous plasmids for transformation of E. coli . Gene 57:266–272
    [Google Scholar]
  32. Hofmann E., Kopperschläger G. 1982; Phosphofructokinase from yeast. Methods Enzymol 90:49–60
    [Google Scholar]
  33. Hofmeyr J. H., Cornish-Bowden A. 1991; Quantitative assessment of regulation in metabolic systems. Eur J Biochem 200:223–236 [CrossRef]
    [Google Scholar]
  34. Ito H., Fukuda Y., Murata K., Kimura A. 1983; Transformation of intact yeast cells treated with alcali cations. J Bacteriol 153:163–168
    [Google Scholar]
  35. Jacoby J., Hollenberg C. P., Heinisch J. J. 1993; Transaldolase mutants in the yeast Kluyveromyces lactis provide evidence that glucose can be metabolized through the pentose phosphate pathway. Mol Microbiol 10:867–876 [CrossRef]
    [Google Scholar]
  36. Kemp R. G., Foe L. G. 1983; Allosteric regulatory properties of muscle phosphofructokinase. Mol Cell Biochem 57:147–154 [CrossRef]
    [Google Scholar]
  37. Kirchberger J., Schellenberger W., Dihazi H, Bär J., Kopperschläger G. 2002; 6-phosphofructokinase from Pichia pastoris: purification, kinetic and molecular characterization of the enzyme. Yeast 19:933–947 [CrossRef]
    [Google Scholar]
  38. Kopperschläger G., Bär J., Nissler K., Hofmann E. 1977; Physicochemical parameters and subunit composition of yeast phosphofructokinase. Eur J Biochem 81:317–325 [CrossRef]
    [Google Scholar]
  39. Kurtzman C. P., Blanz P. A. 1998; Ribosomal RNA/DNA sequence comparisons for assessing phylogenetic relationships. In The Yeasts. A Taxonomic Study, 4th edn. pp 69–74 Edited by Kurtzman C. P., Fell J. W. Amsterdam: Elsevier;
    [Google Scholar]
  40. Lorberg A., Kirchrath L., Ernst J. F., Heinisch J. J. 1999; Genetic and biochemical characterization of phosphofructokinase from the opportunistic pathogenic yeast Candida albicans. Eur J Biochem 260:217–226 [CrossRef]
    [Google Scholar]
  41. Martínez-Costa O. H., Estévez A. M., Sánchez V., Aragón J. J. 1994; Purification and properties of phosphofructokinase from Dictyostelium discoideum. Eur J Biochem 226:1007–1017 [CrossRef]
    [Google Scholar]
  42. Martínez-Costa O. H., Hermida C., Sánchez-Martínez C., Santamaría B., Aragón J. J. 2004; Identification of C-terminal motifs responsible for transmission of ATP inhibition of mammalian phosphofructokinase, and their contribution to other allosteric effects. Biochem J 377:77–84 [CrossRef]
    [Google Scholar]
  43. Monod J., Wyman J., Changeux J.-P. 1965; On the nature allosteric transitions: a plausible model. J Mol Biol 12:88–118 [CrossRef]
    [Google Scholar]
  44. Nomenclature Committee of the International Union of Biochemistry; 1985; Nomenclature for incompletely specified bases in nucleic acid sequences. Recommendations 1984. Eur J Biochem 150:1–5 [CrossRef]
    [Google Scholar]
  45. Ogushi S., Lawson J. W. R., Dobson G. P., Veech R. L., Uyeda K. 1990; A new transient activator of phosphofructokinase during initiation of rapid glycolysis in brain. J Biol Chem 265:10943–10949
    [Google Scholar]
  46. Orosz F., Santamaría B., Ovádi J., Aragón J. J. 1999; Phosphofructokinase from Dictyostelium discoideum is a potent inhibitor of tubulin polymerization. Biochemistry 38:1857–1865 [CrossRef]
    [Google Scholar]
  47. Petit T., Gancedo C. 1999; Molecular cloning and characterization of the gene HXK1 encoding the hexokinase fromYarrowia lipolytica . Yeast 15:1573–1581 [CrossRef]
    [Google Scholar]
  48. Poorman R. A., Randolph A., Kemp R. G., Heinrikson R. L. 1984; Evolution of phosphofructokinase: gene duplication and creation of new effector sites. Nature 309:467–469 [CrossRef]
    [Google Scholar]
  49. Reuter R., Naumann M., Haferburg D, Bär J., Kopperschläger G. 2000; Purification, molecular and kinetic characterization of phosphofructokinase-1 from the yeast Schizosaccharomyces pombe: evidence for an unusual subunit composition. Yeast 16:1273–1285 [CrossRef]
    [Google Scholar]
  50. Sambrook J., Fritsch E. F., Maniatis T. 1989 Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory;
    [Google Scholar]
  51. Schröter A., Kopperschläger G. 1996; 6-phosphofructo-1-kinase from the lipid-accumulating, non-fermentative, red yeast Rhodotorula glutinis. FEMS Microbiol Lett 142:247–252 [CrossRef]
    [Google Scholar]
  52. Shirakihara Y., Evans P. R. 1988; Crystal structure of the complex of phosphofructokinase from Escherichia coli with its reaction products. J Mol Biol 204:973–994 [CrossRef]
    [Google Scholar]
  53. Sikorski R. S., Hieter P. 1989; A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae . Genetics 122:19–27
    [Google Scholar]
  54. Sols A. 1981; Multimodulation of enzyme activity. Curr Top Cell Regul 19:77–101
    [Google Scholar]
  55. Souciet J., Aigle M., Artiguenave F. & 21 other authors; 2000; Genomic exploration of the hemiascomycetous yeasts: 1. A set of yeast species for molecular evolution studies. FEBS Lett 487:3–12 [CrossRef]
    [Google Scholar]
  56. Tornheim K. 1988; Fructose 2,6-bisphosphate and glycolytic oscillations in skeletal muscle extracts. J Biol Chem 263:2619–2624
    [Google Scholar]
  57. Uyeda K. 1979; Phosphofructokinase. Adv Enzymol Relat Areas Mol Biol 48:193–244
    [Google Scholar]
  58. Van Schaftingen E. 1987; Fructose 2,6-bisphosphate. Adv Enzymol Relat Areas Mol Biol 59:315–395
    [Google Scholar]
  59. Yuan W., Tuttle D. L., Shi Y. J., Ralph G. S., Dunn W. A. Jr 1997; Glucose-induced microautophagy in Pichia pastoris requires the alpha-subunit of phosphofructokinase. J Cell Sci 110:1935–1945
    [Google Scholar]
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