The Bacillus subtilis YdfHI two-component system regulates the transcription of ydfJ, a member of the RND superfamily

References

1. Aguilar P. S., Hernandez-Arriaga A. M., Cybulski L. E., Erazo A. C, de Mendoza D. 2001; Molecular basis of thermosensing: a two-component signal transduction thermometer in Bacillus subtilis. EMBO J 20:1681–1691 [CrossRef]
   [Google Scholar]
2. Asai K., Baik S. H., Kasahara Y., Moriya S., Ogasawara N. 2000; Regulation of the transport system for C₄-dicarboxylic acids in Bacillus subtilis. Microbiology 146:263–271
   [Google Scholar]
3. Camacho L. R., Constant P., Raynaud C., Laneelle M. A., Triccas J. A., Gicquel B., Daffe M., Guilhot C. 2001; Analysis of the phthiocerol dimycocerosate locus of Mycobacterium tuberculosis. Evidence that this lipid is involved in the cell wall permeability barrier. J Biol Chem 276:19845–19854 [CrossRef]
   [Google Scholar]
4. Converse S. E., Mougous J. D., Leavell M. D., Leary J. A., Bertozzi C. R., Cox J. S. 2003; MmpL8 is required for sulfolipid-1 biosynthesis and Mycobacterium tuberculosis virulence. Proc Natl Acad Sci U S A 100:6121–6126 [CrossRef]
   [Google Scholar]
5. Doan T., Servant P., Tojo S., Yamaguchi H., Lerondel G., Yoshida K., Fujita Y., Aymerich S. 2003; The Bacillus subtilis ywkA gene encodes a malic enzyme and its transcription is activated by the YufL/YufM two component system in response to malate. Microbiology 149:2331–2343 [CrossRef]
   [Google Scholar]
6. Fabret C., Feher V. A., Hoch J. A. 1999; Two-component signal transduction in Bacillus subtilis: how one organism sees its world. J Bacteriol 181:1975–1983
   [Google Scholar]
7. Fukuchi K., Kasahara Y., Asai K., Kobayashi K., Moriya S, Ogasawara N. 2000; The essential two-component regulatory system encoded by yycF and yycG modulates expression of the ftsAZ operon in Bacillus subtilis. Microbiology 146:1573–1583
   [Google Scholar]
8. Grkovic S., Brown M. H., Skurray R. A. 2002; Regulation of bacterial drug export systems. Microbiol Mol Biol Rev 66:671–701 [CrossRef]
   [Google Scholar]
9. Haldenwang W. G. 1995; The sigma factors of Bacillus subtilis. Microbiol Rev 59:1–30
   [Google Scholar]
10. Hulett F. M. 1996; The signal-transduction network for Pho regulation in Bacillus subtilis. Mol Microbiol 19:933–939 [CrossRef]
    [Google Scholar]
11. Hyyrylainen H. L., Bolhuis A., Darmon E. & 8 other authors; 2001; A novel two-component regulatory system in Bacillus subtilis for the survival of severe secretion stress. Mol Microbiol 41:1159–1172
    [Google Scholar]
12. Ishikawa S., Hara Y., Ohnishi R., Sekiguchi J. 1998; Regulation of a new cell wall hydrolase gene, cwlF, which affects cell separation in Bacillus subtilis . J Bacteriol 180:2549–2555
    [Google Scholar]
13. Joseph P., Guiseppi A., Sorokin A., Denizot F. 2004; Characterization of the Bacillus subtilis YxdJ response regulator as the inducer of expression for the cognate ABC transporter YxdLM. Microbiology 150:2609–2617 [CrossRef]
    [Google Scholar]
14. Kobayashi K., Ogura M., Yamaguchi H., Yoshida K., Ogasawara N., Tanaka T., Fujita Y. 2001; Comprehensive DNA microarray analysis of Bacillus subtilis two-component regulatory systems. J Bacteriol 183:7365–7370 [CrossRef]
    [Google Scholar]
15. Mascher T., Zimmer S. L., Smith T. A., Helmann J. D. 2004; Antibiotic-inducible promoter regulated by the cell envelope stress-sensing two-component system LiaRS of Bacillus subtilis. Antimicrob Agents Chemother 48:2888–2896 [CrossRef]
    [Google Scholar]
16. Maxam A. M., Gilbert W. 1977; A new method for sequencing DNA. Proc Natl Acad Sci U S A 74:560–564 [CrossRef]
    [Google Scholar]
17. Maxam A. M., Gilbert W. 1980; Sequencing end-labeled DNA with base-specific chemical cleavages. Methods Enzymol 65:499–560
    [Google Scholar]
18. Msadek T., Kunst F., Rapoport G. 1995; A signal transduction network in Bacillus subtilis includes the DegS/DegU and ComP/ComA two-component systems. In Two-Component Signal Transduction pp 447–471 Edited by Hoch J. A., Silhavy T. J. Washington, DC: American Society for Microbiology;
    [Google Scholar]
19. Ogura M., Yamaguchi H., Yoshida K., Fujita Y., Tanaka T. 2001; DNA microarray analysis of Bacillus subtilis DegU, ComA and PhoP regulons: an approach to comprehensive analysis ofB. subtilis two-component regulatory systems. Nucleic Acids Res 29:3804–3813 [CrossRef]
    [Google Scholar]
20. Ohki R., Giyanto, Tateno K., Masuyama W., Moriya S., Kobayashi K., Ogasawara N. 2003; The BceRS two-component regulatory system induces expression of the bacitracin transporter, BceAB, in Bacillus subtilis. Mol Microbiol 49:1135–1144 [CrossRef]
    [Google Scholar]
21. Schaeffer P., Millet J., Aubert J. P. 1965; Catabolic repression of bacterial sporulation. Proc Natl Acad Sci U S A 54:704–711 [CrossRef]
    [Google Scholar]
22. Schilling C. H., Held L., Torre M., Saier M. H. Jr 2000; GRASP-DNA: a web application to screen prokaryotic genomes for specific DNA-binding sites and repeat motifs. J Mol Microbiol Biotechnol 2:495–500
    [Google Scholar]
23. Serizawa M., Yamamoto H., Yamaguchi H., Fujita Y., Kobayashi K., Ogasawara N., Sekiguchi J. 2004; Systematic analysis of SigD-regulated genes in Bacillus subtilis by DNA microarray and Northern blotting analyses. Gene 329:125–136 [CrossRef]
    [Google Scholar]
24. Stock J. B., Surette M. G., Levit M., Park P. 1995; Two-component signal transduction systems: structure-function relationships and mechanisms of catalysis. In Two-Component Signal Transduction pp 25–52 Edited by Hoch J. A., Silhavy T. J. Washington, DC: American Society for Microbiology;
    [Google Scholar]
25. Sun G., Sharkova E., Chesnut R., Birkey S., Duggan M. F., Sorokin A., Pujic P., Ehrlich S. D., Hulett F. M. 1996; Regulators of aerobic and anaerobic respiration in Bacillus subtilis. J Bacteriol 178:1374–1385
    [Google Scholar]
26. Tanaka K., Kobayashi K., Ogasawara N. 2003; The Bacillus subtilis YufLM two-component system regulates the expression of the malate transporters MeaN (YufR) and YflS, and is essential for utilization of malate in minimal medium. Microbiology 149:2317–2329 [CrossRef]
    [Google Scholar]
27. Tekaia F., Gordon S. V., Garnier T., Brosch R., Barrell B. G., Cole S. T. 1999; Analysis of the proteome of Mycobacterium tuberculosis in silico. Tuber Lung Dis 79:329–342 [CrossRef]
    [Google Scholar]
28. Tseng T. T., Gratwick K. S., Kollman J., Park D., Nies D. H., Goffeau A., Saier M. H. Jr 1999; The RND permease superfamily: an ancient, ubiquitous and diverse family that includes human disease and development proteins. J Mol Microbiol Biotechnol 1:107–125
    [Google Scholar]
29. Vagner V., Dervyn E., Ehrlich S. D. 1998; A vector for systematic gene inactivation in Bacillus subtilis. Microbiology 144:3097–3104 [CrossRef]
    [Google Scholar]
30. Yamamoto H., Murata M., Sekiguchi J. 2000; The CitST two-component system regulates the expression of the Mg-citrate transporter in Bacillus subtilis. Mol Microbiol 37:898–912 [CrossRef]
    [Google Scholar]
31. Yoshida K., Aoyama D., Ishio I., Shibayama T., Fujita Y. 1997; Organization and transcription of the myo-inositol operon, iol, of Bacillus subtilis . J Bacteriol 179:4591–4598
    [Google Scholar]