Screening genomes of Gram-positive bacteria for double-glycine-motif-containing peptides

References

1. Altena K., Guder A., Cramer C., Bierbaum G. 2000; Biosynthesis of the lantibiotic mersacidin: organization of a type B lantibiotic gene cluster. Appl Environ Microbiol 66:2565–2571 [CrossRef]
   [Google Scholar]
2. Bateman A., Birney E., Cerruti L.7 other authors 2002; The Pfam protein families database. Nucleic Acids Res 30:276–280 [CrossRef]
   [Google Scholar]
3. Bolotin A., Wincker P., Mauger S., Jaillon O., Malarme K., Weissenbach J., Ehrlich S. D., Sorokin A. 2001; The complete genome sequence of the lactic acid bacterium Lactococcus lactis ssp. lactis IL1403. . Genome Res 11:731–753 [CrossRef]
   [Google Scholar]
4. de Saizieu A., Gardes C., Flint N., Wagner C., Kamber M., Mitchell T. J., Keck W., Amrein K. E., Lange R. 2000; Microarray-based identification of a novel Streptococcus pneumoniae regulon controlled by an autoinduced peptide. J Bacteriol 182:4696–4703 [CrossRef]
   [Google Scholar]
5. Diep D. B., Havarstein L. S., Nes I. F. 1996; Characterization of the locus responsible for the bacteriocin production in Lactobacillus plantarum C11. . J Bacteriol 178:4472–4483
   [Google Scholar]
6. Dirix G., Monsieurs P., Dombrecht B., Daniels R., Marchal K., Vanderleyden J., Michiels J. 2004; Peptide signal molecules and bacteriocins in Gram-negative bacteria: a genome-wide in silico screening for peptides containing a double-glycine leader sequence and their cognate transporters. Peptides in press
   [Google Scholar]
7. Ennahar S., Sashihara T., Sonomoto K., Ishizaki A. 2000; Class IIa bacteriocins: biosynthesis, structure and activity. FEMS Microbiol Rev 24:85–106 [CrossRef]
   [Google Scholar]
8. Gilmore M. S., Segarra R. A., Booth M. C., Bogie C. P., Hall L. R., Clewell D. B. 1994; Genetic structure of the Enterococcus faecalis plasmid pAD1-encoded cytolytic toxin system and its relationship to lantibiotic determinants. J Bacteriol 176:7335–7344
   [Google Scholar]
9. Havarstein L. S., Holo H., Nes I. F. 1994; The leader peptide of colicin V shares consensus sequences with leader peptides that are common among peptide bacteriocins produced by gram-positive bacteria. Microbiology 140:2383–2389 [CrossRef]
   [Google Scholar]
10. Havarstein L. S., Diep D. B., Nes I. F. 1995; A family of bacteriocin ABC transporters carry out proteolytic processing of their substrates concomitant with export. Mol Microbiol 16:229–240 [CrossRef]
    [Google Scholar]
11. Havarstein L. S., Hakenbeck R., Gaustad P. 1997; Natural competence in the genus Streptococcus: evidence that streptococci can change pherotype by interspecies recombinational exchanges. J Bacteriol 179:6589–6594
    [Google Scholar]
12. Holo H., Nilssen O., Nes I. F. 1991; Lactococcin A, a new bacteriocin from Lactococcus lactis subsp.cremoris: isolation and characterization of the protein and its gene. J Bacteriol 173:3879–3887
    [Google Scholar]
13. Jack R. W., Tagg J. R., Ray B. 1995; Bacteriocins of gram-positive bacteria. Microbiol Rev 59:171–200
    [Google Scholar]
14. Kunst F., Ogasawara N., Moszer I.148 other authors 1997; The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Nature 390:249–256 [CrossRef]
    [Google Scholar]
15. Li Y. H., Lau P. C., Lee J. H., Ellen R. P., Cvitkovitch D. G. 2001; Natural genetic transformation of Streptococcus mutans growing in biofilms. J Bacteriol 183:897–908 [CrossRef]
    [Google Scholar]
16. Michiels J., Dirix G., Vanderleyden J., Xi C. 2001; Processing and export of peptide pheromones and bacteriocins in Gram-negative bacteria. Trends Microbiol 9:164–168 [CrossRef]
    [Google Scholar]
17. Nissen-Meyer J., Larsen A. G., Sletten K., Daeschel M., Nes I. F. 1993; Purification and characterization of plantaricin A, a Lactobacillus plantarum bacteriocin whose activity depends on the action of two peptides. J Gen Microbiol 139:1973–1978 [CrossRef]
    [Google Scholar]
18. Paik S. H., Chakicherla A., Hansen J. N. 1998; Identification and characterization of the structural and transporter genes for, and the chemical and biological properties of, sublancin 168, a novel lantibiotic produced by Bacillus subtilis 168. J Biol Chem 273:23134–23142 [CrossRef]
    [Google Scholar]
19. Ross K. F., Ronson C. W., Tagg J. R. 1993; Isolation and characterization of the lantibiotic salivaricin A and its structural gene salA from Streptococcus salivarius 20P3. Appl Environ Microbiol 59:2014–2021
    [Google Scholar]
20. Smoot J. C., Barbian K. D., Van Gompel J. J.15 other authors 2002; Genome sequence and comparative microarray analysis of serotype M18 group A Streptococcus strains associated with acute rheumatic fever outbreaks. Proc Natl Acad Sci U S A 99:4668–4673 [CrossRef]
    [Google Scholar]
21. Upton M., Tagg J. R., Wescombe P., Jenkinson H. F. 2001; Intra- and interspecies signaling between Streptococcus salivarius and Streptococcus pyogenes mediated by SalA and SalA1 lantibiotic peptides. J Bacteriol 183:3931–3938 [CrossRef]
    [Google Scholar]
22. Venema K., Dost M. H., Beun P. A., Haandrikman A. J., Venema G., Kok J. 1996; The genes for secretion and maturation of lactococcins are located on the chromosome of Lactococcus lactis IL1403. Appl Environ Microbiol 62:1689–1692
    [Google Scholar]