Identification of sporulation genes by genome-wide analysis of the σ E regulon of Bacillus subtilis

References

1. Abanes-De Mello A., Sun Y. L., Aung S., Pogliano K. 2002; A cytoskeleton-like role for the bacterial cell wall during engulfment of the Bacillus subtilis forespore. Genes Dev 16:3253–3264
   [Google Scholar]
2. Anagnostopoulos C., Spizizen J. 1961; Requirements for transformation in Bacillus subtilis . J Bacteriol 81:741–746
   [Google Scholar]
3. Britton R. A., Eichenberger P., Gonzalez-Pastor J. E., Fawcett P., Monson R., Losick R., Grossman A. D. 2002; Genome-wide analysis of the stationary-phase sigma factor (sigma-H) regulon of Bacillus subtilis . J Bacteriol 184:4881–4890
   [Google Scholar]
4. Daniel R. A., Errington J. 1993; Cloning, DNA sequence, functional analysis and transcriptional regulation of the genes encoding dipicolinic acid synthetase required for sporulation in Bacillus subtilis . J Mol Biol 232:468–483
   [Google Scholar]
5. Eichenberger P., Jensen S. T., Conlon E. M. 8 other authors 2003; The σ ^E regulon and the identification of additional sporulation genes in Bacillus subtilis . J Mol Biol 327:945–972
   [Google Scholar]
6. Errington J. 1993; Bacillus subtilis sporulation: regulation of gene expression and control of morphogenesis. Microbiol Rev 57:1–33
   [Google Scholar]
7. Errington J., Mandelstam J. 1983; Variety of sporulation phenotypes resulting from mutations in a single regulatory locus, spoIIA , in Bacillus subtilis . J Gen Microbiol 129:2091–2101
   [Google Scholar]
8. Errington J., Mandelstam J. 1986; Use of a lacZ gene fusion to determine the dependence pattern and the spore compartment expression of sporulation operon spoVA in spo mutants of Bacillus subtilis . J Gen Microbiol 132:2977–2985
   [Google Scholar]
9. Errington J., Foulger D., Illing N., Partridge S. R., Stevens C. M. 1990; Regulation of differential gene expression during sporulation in Bacillus subtilis . In Genetics and Biotechnology of Bacilli pp  257–267 Edited by Zukowski M. M., Ganesan A. T., Hoch J. A. San Diego: Academic Press;
   [Google Scholar]
10. Fawcett P., Eichenberger P., Losick R., Youngman P. 2000; The transcriptional profile of early to middle sporulation in Bacillus subtilis . Proc Natl Acad Sci U S A 97:8063–8068
    [Google Scholar]
11. Foulger D., Errington J. 1989; The role of the sporulation gene spoIIIE in the regulation of prespore-specific gene expression in Bacillus subtilis . Mol Microbiol 3:1247–1255
    [Google Scholar]
12. Foulger D., Parker G. F., Errington J. 1995; Medium-dependent sporulation resulting from a mutation in the spoIIAB gene of Bacillus subtilis . Microbiology 141:1763–1769
    [Google Scholar]
13. Frandsen N., Stragier P. 1995; Identification and characterization of the Bacillus spoIIP locus. J Bacteriol 177:716–722
    [Google Scholar]
14. Fukushima T., Yamamoto H., Atrih A., Foster S. J., Sekiguchi J. 2002; A polysaccharide deacetylase gene ( pdaA ) is required for germination and for production of muramic delta-lactam residues in the spore cortex of Bacillus subtilis . J Bacteriol 184:6007–6015
    [Google Scholar]
15. Haldenwang W. G. 1995; The sigma factors of Bacillus subtilis . Microbiol Rev 59:1–30
    [Google Scholar]
16. Illing N. 1990 The control of differential gene expression during sporulation in Bacillus subtilis DPhil thesis University of Oxford;
    [Google Scholar]
17. Itaya M., Kondo K., Tanaka T. 1989; A neomycin resistance gene cassette selectable in a single copy state in the Bacillus subtilis chromosome. Nucleic Acids Res 17:4410
    [Google Scholar]
18. Jenkinson H. F. 1983; Altered arrangement of proteins in the spore coat of a germination mutant of Bacillus subtilis . J Gen Microbiol 129:1945–1958
    [Google Scholar]
19. Jonas R. M., Weaver E. A., Kenney T. J., Moran C. P. Jr, Haldenwang W. G. 1988; The Bacillus subtilis spoIIG operon encodes both σ ^E and a gene necessary for σ ^E activation. J Bacteriol 170:507–511
    [Google Scholar]
20. Karow M. L., Glaser P., Piggot P. J. 1995; Identification of a gene, spoIIR , that links the activation of σ ^E to the transcriptional activity of σ ^F during sporulation in Bacillus subtilis . Proc Natl Acad Sci U S A 92:2012–2016
    [Google Scholar]
21. Kenney T. J., Moran C. P. Jr 1987; Organization and regulation of an operon that encodes a sporulation-essential sigma factor in Bacillus subtilis . J Bacteriol 169:3329–3339
    [Google Scholar]
22. Kroos L., Yu Y. T. 2000; Regulation of sigma factor activity during Bacillus subtilis development. Curr Opin Microbiol 3:553–560
    [Google Scholar]
23. Kunkel B., Kroos L., Poth H., Youngman P., Losick R. 1989; Temporal and spatial control of the mother-cell regulatory gene spoIIID of Bacillus subtilis . Genes Dev 3:1735–1744
    [Google Scholar]
24. LaBell T. L., Trempy J. E., Haldenwang W. G. 1987; Sporulation-specific sigma factor σ ²⁹ of Bacillus subtilis is synthesized from a precursor protein. Proc Natl Acad Sci U S A 84:1784–1788
    [Google Scholar]
25. Lewis P. J., Marston A. L. 1999; GFP vectors for controlled expression and dual labelling of protein fusions in Bacillus subtilis . Gene 227:101–110
    [Google Scholar]
26. Londono-Vallejo J. A., Stragier P. 1995; Cell-cell signaling pathway activating a developmental transcription factor in Bacillus subtilis . Genes Dev 9:503–508
    [Google Scholar]
27. Molle V., Nakaura Y., Shivers R. P., Yamaguchi H., Losick R., Fujita Y., Sonenshein A. L. 2003; Additional targets of the Bacillus subtilis global regulator CodY identified by chromatin immunoprecipitation and genome-wide transcript analysis. J Bacteriol 185:1911–1922
    [Google Scholar]
28. Partridge S. R., Errington J. 1993; The importance of morphological events and intercellular interactions in the regulation of prespore-specific gene expression during sporulation in Bacillus subtilis . Mol Microbiol 8:945–955
    [Google Scholar]
29. Perez A. R., Abanes-De Mello A., Pogliano K. 2000; SpoIIB localizes to active sites of septal biogenesis and spatially regulates septal thinning during engulfment in Bacillus subtilis . J Bacteriol 182:1096–1108
    [Google Scholar]
30. Piggot P. J., Losick R. 2002 Sporulation genes and intercompartmental regulation. In Bacillus Subtilis and its Relatives: from Genes to Cells pp  483–517 Edited by Sonenshein A. L., Hoch J. A., Losick R. Washington, DC: American Society for Microbiology;
    [Google Scholar]
31. Price C. W., Fawcett P., Ceremonie H., Su N., Murphy C. K., Youngman P. 2001; Genome-wide analysis of the general stress response in Bacillus subtilis . Mol Microbiol 41:757–774
    [Google Scholar]
32. Sambrook J., Fritsch E. F., Maniatis T. 1989 Molecular Cloning: a Laboratory Manual , 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory;
    [Google Scholar]
33. Satola S., Kirchman P. A., Moran C. P. Jr 1991; Spo0A binds to a promoter used by σ ^A RNA polymerase during sporulation in Bacillus subtilis . Proc Natl Acad Sci U S A 88:4533–4537
    [Google Scholar]
34. Smith K., Bayer M. E., Youngman P. 1993; Physical and functional characterization of the Bacillus subtilis spoIIM gene. J Bacteriol 175:3607–3617
    [Google Scholar]
35. Sterlini J. M., Mandelstam J. 1969; Commitment to sporulation in Bacillus subtilis and its relationship to development of actinomycin resistance. Biochem J 113:29–37
    [Google Scholar]
36. Stevens C. M., Errington J. 1990; Differential gene expression during sporulation in Bacillus subtilis : structure and regulation of the spoIIID gene. Mol Microbiol 4:543–552
    [Google Scholar]
37. Stragier P., Bonamy C., Karmazyn-Campelli C. 1988; Processing of a sporulation sigma factor in Bacillus subtilis : how morphological structure could control gene expression. Cell 52:697–704
    [Google Scholar]
38. Sun Y. L., Sharp M. D., Pogliano K. 2000; A dispensable role for forespore-specific gene expression in engulfment of the forespore during sporulation in Bacillus subtilis . J Bacteriol 182:2919–2927
    [Google Scholar]
39. Takamatsu H., Kodama T., Imamura A., Asai K., Kobayashi K., Nakayama T., Ogasawara N., Watabe K. 2000; The Bacillus subtilis yabG gene is transcribed by SigK RNA polymerase during sporulation, and yabG mutant spores have altered coat protein composition. J Bacteriol 182:1883–1888
    [Google Scholar]
40. Vagner V., Dervyn E., Ehrlich S. D. 1998; A vector for systematic gene inactivation in Bacillus subtilis . Microbiology 144:3097–3104
    [Google Scholar]
41. Wu L. J., Errington J. 1994; Bacillus subtilis spoIIIE protein required for DNA segregation during asymmetric cell division. Science 264:572–575
    [Google Scholar]
42. Zhang J., Ichikawa H., Halberg R., Kroos L., Aronson A. I. 1994; Regulation of the transcription of a cluster of Bacillus subtilis spore coat genes. J Mol Biol 240:405–415
    [Google Scholar]