1887

Abstract

The taxonomic studies on the genus performed in the Department of Bacteriology of the University of California at Berkeley played a significant rôle in the development of modern prokaryote taxonomy, which started in the 1960s. This impact was due to a revival of the method of den Dooren de Jong for the nutritional analysis of chemoorganotrophic organisms and, mostly, to the introduction of the determination of rRNA as a method of taxonomic analysis. While the introduction of the nutritional studies facilitated the characterization of and other chemoorganotrophs, the applicability of the rRNA studies extended to all prokaryotes.

Loading

Article metrics loading...

/content/journal/micro/10.1099/mic.0.25952-0
2003-01-01
2020-04-06
Loading full text...

Full text loading...

/deliver/fulltext/micro/149/1/mic149_1.html?itemId=/content/journal/micro/10.1099/mic.0.25952-0&mimeType=html&fmt=ahah

References

  1. Amann R, Ludwig W, Schulze W, Spring W, Moore E., Schleifer K.-H. 1996; r-RNA-targeted oligonucleotide probes for the identification of genuine and former pseudomonads. Syst Appl Microbiol19:501–509
    [Google Scholar]
  2. Ballard R. W, Doudoroff M, Stanier R. Y., Mandel M. 1968; Taxonomy of the aerobic pseudomonads: Pseudomonas diminuta and P. vesiculare. J Gen Microbiol53:349–361
    [Google Scholar]
  3. Ballard R. W, Palleroni N. J, Doudoroff M, Stanier R. Y., Mandel M. 1970; Taxonomy of the aerobic pseudomonads: Pseudomonas cepacia , P. marginata , P. alliicola and P. caryophylli. J Gen Microbiol60:199–214
    [Google Scholar]
  4. Barrett E. L, Solanes R. E, Tang J. S., Palleroni N. J. 1986; Pseudomonas fluorescens biovar V: its resolution into distinct component groups and the relationship of these groups to other P. fluorescens biovars, to P. putida , and to psychrotrophic pseudomonads associated with food spoilage. J Gen Microbiol132:2709–2721
    [Google Scholar]
  5. Beijerinck M. W. 1921; Verzamelde Werken , vols I–V. Gravenhage, Nijhoff. Vol. VI, ibid1940
    [Google Scholar]
  6. Bergey D. H, Harrison F. C, Breed R. S, Hammer B. W., Huntoon F. M. 1923; Bergey's Manual of Determinative Bacteriology, 1st edn. Baltimore: Williams and Wilkins;
    [Google Scholar]
  7. Busse H.-J, El-Banna T., Auling G. 1989; Evaluation of different approaches for identification of xenobiotic-degrading pseudomonads. Appl Environ Microbiol55:1578–1583
    [Google Scholar]
  8. Byng G. L, Johnson J. L, Whitaker R. J., Jensen R. A. 1983; The evolutionary pattern of aromatic amino acid biosynthesis and the phylogeny of pseudomonad bacteria. J Mol Ecol19:272–282
    [Google Scholar]
  9. Champion A. B, Barrett E. L, Palleroni N. J, Soderberg K. L, Kunisawa R, Contopoulou R, Wilson A. C., Doudoroff M. 1980; Evolution in Pseudomonas fluorescens. J Gen Microbiol120:485–511
    [Google Scholar]
  10. Cohn F. 1872; Untersuchungen über Bakterien. Beitr Biol Pflanz1:127–224
    [Google Scholar]
  11. De Vos P., De Ley J. 1983; Intra- and intergeneric similarities of Pseudomonas and Xanthomonas ribosomal ribonucleic acid cistrons. Int J Syst Bacteriol33:487–509
    [Google Scholar]
  12. De Vos P, Goor M, Gillis M., De Ley J. 1985; Ribosomal ribonucleic acid cistron similarities of phytopathogenic Pseudomonas species. Int J Syst Bacteriol35:169–184
    [Google Scholar]
  13. De Vos P, van Landschoot A, Segers P.. 9 other authors 1989; Genotypic relationships and taxonomic localization of unclassified Pseudomonas and Pseudomonas -like strains by deoxyribonucleic acid : ribosomal ribonucleic acid hybridizations. Int J Syst Bacteriol39:35–49
    [Google Scholar]
  14. den Dooren de Jong L. E. 1926; Bijdrage tot de kennis van het Mineralisatieprocess Rotterdam: Nijgh & Van Ditmar;
    [Google Scholar]
  15. Doi R. H., Igarashi R. T. 1965; Conservation of ribosomal and messenger ribonucleic acid cistrons in Bacillus species. J Bacteriol90:384–390
    [Google Scholar]
  16. Dubnau D, Smith I, Porell P., Marmur J. 1965; Genetic conservation in Bacillus species and nucleic acid homologies. Proc Natl Acad Sci U S A54:491–498
    [Google Scholar]
  17. Fox G. E, Pechman K. J., Woese C. R. 1977; Comparative cataloging of 16S ribosomal ribonucleic acid: molecular approach to procaryotic systematics. Int J Syst Bacteriol27:44–57
    [Google Scholar]
  18. Gest H. 1999a; Bacterial classification and taxonomy: a ‘primer’ for the new millennium. Microbiology Today26:70–72
    [Google Scholar]
  19. Gest H. 1999b; Gest's postulates. ASM News65:123
    [Google Scholar]
  20. Hagedorn C., Holt J. G. 1975; A nutritional and taxonomic survey of Arthrobacter soil isolates. Can J Microbiol21:353–361
    [Google Scholar]
  21. Haubold B., Rainey P. B. 1996; Genetic and ecotypic structure of a fluorescent Pseudomonas population. Mol Ecol5:747–761
    [Google Scholar]
  22. Janke A. 1924; Allgemeine Technische Mikrobiologie. I Teil: Die Mikroorganismen Dresden & Leipzig: T. Steinkopf;
    [Google Scholar]
  23. Johnson J. L., Francis B. S. 1975; Taxonomy of the clostridia: ribosomal ribonucleic acid homologies among the species. J Gen Microbiol88:229–244
    [Google Scholar]
  24. Johnson J. L., Ordal E. J. 1968; Deoxyribonucleic acid homology in bacterial taxonomy: effect of incubation temperature on reaction specificity. J Bacteriol95:893–900
    [Google Scholar]
  25. Johnson J. L., Palleroni N. J. 1989; Deoxyribonucleic acid similarities among Pseudomonas species. Int J Syst Bacteriol39:230–235
    [Google Scholar]
  26. Kluyver A. J., van Niel C. B. 1936; Prospects for a natural system of classification of bacteria. Zentralbl Bakteriol Parasitenkd Infektionskr Hyg AbtII 94:369–403
    [Google Scholar]
  27. Lehmann K. B., Neumann R. O. 1896; Atlas und Grundriss der Bakteriologie und Lehrbuch der Speciellen Bakteriologischen Diagnostik, 1st edn. München: J. F. Lehmann;
    [Google Scholar]
  28. Lehmann K. B., Neumann R. O. 1927; Bakteriologie insbesondere Bakteriologische Diagnostik. II Allgemeine und spezielle Bakteriologie, 7 Aufl Munchen: J. F. Lehmann;
    [Google Scholar]
  29. Linnaeus C. 1753; Species Plantarum Holmiae;
    [Google Scholar]
  30. Lomholt J. A, Poulsen K., Kilian M. 2001; Epidemic poulation structure of Pseudomonas aeruginosa : evidence for a clone that is pathogenic to the eye and that has a distinct combination of virulence factors. Infect Immun69:6284–6295
    [Google Scholar]
  31. Meyer T. E, Cusanovich M. A., Kamen M. D. 1986; Evidence against use of bacterial aminoacid sequence data for construction of all-inclusive phylogenetic trees. Proc Natl Acad Sci U S A83:217–220
    [Google Scholar]
  32. Migula W. 1900; Specielle Systematik der Bakterien Jena: G. Fischer;
    [Google Scholar]
  33. Misaghi I., Grogan R. G. 1969; Nutritional and biochemical comparisons of plant-pathogenic and saprophytic fluorescent pseudomonads. Phytopathology59:1436–1450
    [Google Scholar]
  34. Ochman H, Lawrence J. G., Groisman E. A. 2000; Lateral gene transfer and the nature of bacterial innovation. Nature405:299–304
    [Google Scholar]
  35. Orla-Jensen S. 1909; Die Hauptlinien der natürlichen Bakteriensystems. Zentralbl Bakteriol Parasitenkd Infektionskr Hyg Abt II 22:305–346
    [Google Scholar]
  36. Oyaizu H., Komagata K. 1983; Groupings of Pseudomonas species on the basis of cellular fatty acid compositions and the quinone system with special reference to the existence of 3-hydroxy fatty acids. J Gen Appl Microbiol29:17–40
    [Google Scholar]
  37. Pace B., Campbell L. L. 1971a; Homology of ribosomal ribonucleic acid of Desulfovibrio species with Desulfovibrio vulgaris. J Bacteriol106:717–719
    [Google Scholar]
  38. Pace B., Campbell L. L. 1971b; Homology of ribosomal ribonucleic acid of diverse bacterial species with Escherichia coli and Bacillus stearothermophilus. J Bacteriol 107:543–547
    [Google Scholar]
  39. Palleroni N. J. 1984; Pseudomonas (Migula). In Bergey's Manual of Systematic Bacteriologyvol. 1 pp141–199 Edited by Krieg N. R., Holt J. G.. Baltimore, MD: Williams & Wilkins;
    [Google Scholar]
  40. Palleroni N. J. 1993; Pseudomonas classification. A new case history in the taxonomy of Gram-negative bacteria. Antonie van Leeuwenhoek64:231–251
    [Google Scholar]
  41. Palleroni N. J. 1994; Some reflections on bacterial diversity. ASM News10:537–540
    [Google Scholar]
  42. Palleroni N. J. 1997; Prokaryotic diversity and the importance of culturing. Antonie van Leeuwenhoek72:3–19
    [Google Scholar]
  43. Palleroni N. J., Doudoroff M. 1971; Phenotypic characterization and deoxyribonucleic acid homologies of Pseudomonas solanacearum. J Bacteriol107:690–696
    [Google Scholar]
  44. Palleroni N. J, Doudoroff M, Stanier R. Y, Solanes R. E., Mandel M. 1970; Taxonomy of the aerobic pseudomonads: the properties of the Pseudomonas stutzeri group. J Gen Microbiol60:215–231
    [Google Scholar]
  45. Palleroni N. J, Ballard R. W, Ralston E., Doudoroff M. 1972; Deoxyribonucleic acid homologies among some Pseudomonas species. J Bacteriol110:1–11
    [Google Scholar]
  46. Palleroni N. J, Kunisawa R, Contopoulou R., Doudoroff M. 1973; Nucleic acid homologies in the genus Pseudomonas. Int J Syst Bacteriol23:333–339
    [Google Scholar]
  47. Pecknold P. C., Grogan R. G. 1973; Deoxyribonucleic acid homology groups among phytopathogenic Pseudomonas species. Int J Syst Bacteriol23:111–121
    [Google Scholar]
  48. Postgate J. 1995; Breathless niches. Nature377:26
    [Google Scholar]
  49. Prévot A.-R. 1933; Études de systématique bactérienne. I. Lois générales. II. Cocci anaérobies. Ann Sci Nat Bot10th Ser 15:23–260
    [Google Scholar]
  50. Pringsheim E. G. 1923; Zur Kritik der Bakteriensystematik. Lotos71:357–377
    [Google Scholar]
  51. Rahn O. 1929; Contributions to the classification of bacteria. V–X. Zentralbl Bakteriol Parasitenkd Infektionskr Hyg Abt II79:321–343
    [Google Scholar]
  52. Rahn O. 1937; New principles for the classification of bacteria. Zentralbl Bakteriol Parasitenkd Infektionskr Hyg AbtII 96:273–286
    [Google Scholar]
  53. Ralston E, Palleroni N. J., Doudoroff M. 1972; Deoxyribonucleic acid homologies of some so-called “ Hydrogenomonas ” species. J Bacteriol109:465–466
    [Google Scholar]
  54. Ralston E, Palleroni N. J., Doudoroff M. 1973; Pseudomonas pickettii , a new species of clinical origin related to Pseudomonas solanacearum. Int J Syst Bacteriol23:15–19
    [Google Scholar]
  55. Ralston-Barrett E, Palleroni N. J., Doudoroff M. 1976; Phenotypic characterization and deoxyribonucleic acid homologies of the Pseudomonas alcaligenes group. Int J Syst Bacteriol26:421–426
    [Google Scholar]
  56. Redfearn M. S, Palleroni N. J., Stanier R. Y. 1966; A comparative study of Pseudomonas pseudomallei and Bacillus mallei. J Gen Microbiol43:293–313
    [Google Scholar]
  57. Sands D. C, Schroth M. N., Hildebrand D. C. 1970; Taxonomy of phytopathogenic pseudomonads. J Bacteriol101:9–23
    [Google Scholar]
  58. Spiers A. J, Buckling A., Rainey P. B. 2000; The causes of Pseudomonas diversity. Microbiology146:2345–2350
    [Google Scholar]
  59. Stanier R. Y. 1971; Toward an evolutionary taxonomy of the bacteria. In Recent Advances in Microbiology pp595–604 Mexico:
    [Google Scholar]
  60. Stanier R. Y. 1975; Obituary. Michael Doudoroff, 1911–1975. ASM News41:737–738
    [Google Scholar]
  61. Stanier R. Y. 1980; The journey, not the arrival, matters. Annu Rev Microbiol34:1–48
    [Google Scholar]
  62. Stanier R. Y., van Niel C. B. 1962; The concept of a bacterium. Arch Mikrobiol42:17–35
    [Google Scholar]
  63. Stanier R. Y, Palleroni N. J., Doudoroff M. 1966; The aerobic pseudomonads: a taxonomic study. J Gen Microbiol43:159–271
    [Google Scholar]
  64. Stead D. E. 1992; Grouping of plant-pathogenic and some other Pseudomonas spp. by using cellular fatty acid profiles. Int J Syst Bacteriol42:281–295
    [Google Scholar]
  65. Stover C. K, Pham X. Q, Erwin A. L. 28 other authors 2000; Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen. Nature406:959–964
    [Google Scholar]
  66. van Niel C. B. 1946; The classification and natural relationships of bacteria. Cold Spring Harbor Symp Quant Biol11:285–301
    [Google Scholar]
  67. White P. B. 1937; Remarks on bacterial taxonomy. Zentralbl Bakteriol Parasitenkd Infektionskr Hyg Abt II96:145–149
    [Google Scholar]
  68. Winogradsky S. 1949; Microbiologie du Sol. Problèmes et Méthodes. Cinquante Ans de Recherches Paris: Masson et Cie;
    [Google Scholar]
  69. Woese C. R. 1987; Bacterial evolution. Microb Evol51:221–271
    [Google Scholar]
  70. Woese C. R, Stackebrandt E, Macke T. J., Fox G. E. 1985; A phylogenetic definition of the major eubacterial taxa. Syst Appl Microbiol6:143–151
    [Google Scholar]
  71. Yamamoto S, Kasai H, Arnold D. L, Jackson R. W, Vivian A., Harayama S. 2000; Phylogeny of the genus Pseudomonas : intrageneric structure reconstructed from the nucleotide sequences of gyrB and rpoD genes. Microbiology146:2385–2394
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/micro/10.1099/mic.0.25952-0
Loading

Most cited this month

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error