1887

Abstract

The coenzyme B production pathway in has been deduced using a combination of genetic, biochemical and bioinformatics approaches. The coenzyme B gene cluster of CRL1098 has the unique feature of clustering together the , and genes. It consists of 29 ORFs encoding the complete enzymic machinery necessary for biosynthesis. Transcriptional analysis showed it to be expressed as two tandem transcripts of approximately 22 and 4 kb, carrying , , , , , and , respectively. Both transcripts appear to be similarly regulated, and under the conditions assayed are induced in the late-exponential growth phase. Evidence for a regulatory mechanism of negative feedback inhibition by vitamin B itself was observed. Comparative genomics analysis of the coding sequences showed them to be most similar to those coding for the anaerobic coenzyme B pathways previously characterized in a few representatives of the genera and . This contrasts with the trusted species phylogeny and suggests horizontal gene transfer of the B biosynthesis genes. G+C content and codon adaptation index analysis is suggestive that the postulated transfer of these genes was not a recent event. Additional comparative genomics and transcriptional analysis of the sequences acquired during this study suggests a functional link between coenzyme B biosynthesis and reuterin production, which might be implicated in 's success in colonizing the gastrointestinal tract. This information on gene organization, gene transcription and gene acquisition is relevant for the development of (fermented) foods and probiotics enriched in B.

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2008-01-01
2019-11-18
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Northern blots [ PDF] (314 kb) Bootstrapped neighbour-joining phylogenetic tree based on 16S rRNA sequences. In contrast with the tree constructed for CbiC (Fig. 5 of main paper), the γ-proteobacteria do not cluster with . [ PDF] (25 kb)

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Northern blots [ PDF] (314 kb) Bootstrapped neighbour-joining phylogenetic tree based on 16S rRNA sequences. In contrast with the tree constructed for CbiC (Fig. 5 of main paper), the γ-proteobacteria do not cluster with . [ PDF] (25 kb)

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