A bacterial two-hybrid genome fragment library for deciphering regulatory networks of the opportunistic pathogen Pseudomonas aeruginosa

References

1. Bordi C., de Bentzmann S. ( 2011). Hacking into bacterial biofilms: a new therapeutic challenge. Ann Intensive Care 1:19 [View Article][PubMed]
   [Google Scholar]
2. Bordi C., Lamy M. C., Ventre I., Termine E., Hachani A., Fillet S., Roche B., Bleves S., Méjean V. & other authors ( 2010). Regulatory RNAs and the HptB/RetS signalling pathways fine-tune Pseudomonas aeruginosa pathogenesis. Mol Microbiol 76:1427–1443 [View Article][PubMed]
   [Google Scholar]
3. Brencic A., McFarland K. A., McManus H. R., Castang S., Mogno I., Dove S. L., Lory S. ( 2009). The GacS/GacA signal transduction system of Pseudomonas aeruginosa acts exclusively through its control over the transcription of the RsmY and RsmZ regulatory small RNAs. Mol Microbiol 73:434–445 [View Article][PubMed]
   [Google Scholar]
4. Burrowes E., Baysse C., Adams C., O’Gara F. ( 2006). Influence of the regulatory protein RsmA on cellular functions in Pseudomonas aeruginosa PAO1, as revealed by transcriptome analysis. Microbiology 152:405–418 [View Article][PubMed]
   [Google Scholar]
5. Clarke L., Carbon J. ( 1976). A colony bank containing synthetic Col El hybrid plasmids representative of the entire E. coli genome. Cell 9:91–99 [View Article][PubMed]
   [Google Scholar]
6. De N., Navarro M. V., Raghavan R. V., Sondermann H. ( 2009). Determinants for the activation and autoinhibition of the diguanylate cyclase response regulator WspR. J Mol Biol 393:619–633 [View Article][PubMed]
   [Google Scholar]
7. Delumeau O., Dutta S., Brigulla M., Kuhnke G., Hardwick S. W., Völker U., Yudkin M. D., Lewis R. J. ( 2004). Functional and structural characterization of RsbU, a stress signaling protein phosphatase 2C. J Biol Chem 279:40927–40937 [View Article][PubMed]
   [Google Scholar]
8. Domain F., Bina X. R., Levy S. B. ( 2007). Transketolase A, an enzyme in central metabolism, derepresses the marRAB multiple antibiotic resistance operon of Escherichia coli by interaction with MarR. Mol Microbiol 66:383–394 [View Article][PubMed]
   [Google Scholar]
9. Fields S., Song O. ( 1989). A novel genetic system to detect protein–protein interactions. Nature 340:245–246 [View Article][PubMed]
   [Google Scholar]
10. Gao R., Stock A. M. ( 2010). Molecular strategies for phosphorylation-mediated regulation of response regulator activity. Curr Opin Microbiol 13:160–167 [View Article][PubMed]
    [Google Scholar]
11. Goodman A. L., Kulasekara B., Rietsch A., Boyd D., Smith R. S., Lory S. ( 2004). A signaling network reciprocally regulates genes associated with acute infection and chronic persistence in Pseudomonas aeruginosa . Dev Cell 7:745–754 [View Article][PubMed]
    [Google Scholar]
12. Handford J. I., Ize B., Buchanan G., Butland G. P., Greenblatt J., Emili A., Palmer T. ( 2009). Conserved network of proteins essential for bacterial viability. J Bacteriol 191:4732–4749 [View Article][PubMed]
    [Google Scholar]
13. Heurlier K., Williams F., Heeb S., Dormond C., Pessi G., Singer D., Cámara M., Williams P., Haas D. ( 2004). Positive control of swarming, rhamnolipid synthesis, and lipase production by the posttranscriptional RsmA/RsmZ system in Pseudomonas aeruginosa PAO1. J Bacteriol 186:2936–2945 [View Article][PubMed]
    [Google Scholar]
14. Hsu J. L., Chen H. C., Peng H. L., Chang H. Y. ( 2008). Characterization of the histidine-containing phosphotransfer protein B-mediated multistep phosphorelay system in Pseudomonas aeruginosa PAO1. J Biol Chem 283:9933–9944 [View Article][PubMed]
    [Google Scholar]
15. Karimova G., Pidoux J., Ullmann A., Ladant D. ( 1998). A bacterial two-hybrid system based on a reconstituted signal transduction pathway. Proc Natl Acad Sci U S A 95:5752–5756 [View Article][PubMed]
    [Google Scholar]
16. Karimova G., Ullmann A., Ladant D. ( 2001). Protein-protein interaction between Bacillus stearothermophilus tyrosyl-tRNA synthetase subdomains revealed by a bacterial two-hybrid system. J Mol Microbiol Biotechnol 3:73–82[PubMed]
    [Google Scholar]
17. Karna S. L., Zogaj X., Barker J. R., Seshu J., Dove S. L., Klose K. E. ( 2010). A bacterial two-hybrid system that utilizes Gateway cloning for rapid screening of protein-protein interactions. Biotechniques 49:831–833 [View Article][PubMed]
    [Google Scholar]
18. Kay E., Humair B., Dénervaud V., Riedel K., Spahr S., Eberl L., Valverde C., Haas D. ( 2006). Two GacA-dependent small RNAs modulate the quorum-sensing response in Pseudomonas aeruginosa . J Bacteriol 188:6026–6033 [View Article][PubMed]
    [Google Scholar]
19. Kleinschnitz E. M., Heichlinger A., Schirner K., Winkler J., Latus A., Maldener I., Wohlleben W., Muth G. ( 2011). Proteins encoded by the mre gene cluster in Streptomyces coelicolor A3(2) cooperate in spore wall synthesis. Mol Microbiol 79:1367–1379 [View Article][PubMed]
    [Google Scholar]
20. Klepp L. I., Soria M., Blanco F. C., Bianco M. V., Santangelo M. P., Cataldi A. A., Bigi F. ( 2009). Identification of two proteins that interact with the Erp virulence factor from Mycobacterium tuberculosis by using the bacterial two-hybrid system. BMC Mol Biol 10:3 [View Article][PubMed]
    [Google Scholar]
21. Pessi G., Williams F., Hindle Z., Heurlier K., Holden M. T., Cámara M., Haas D., Williams P. ( 2001). The global posttranscriptional regulator RsmA modulates production of virulence determinants and N-acylhomoserine lactones in Pseudomonas aeruginosa . J Bacteriol 183:6676–6683 [View Article][PubMed]
    [Google Scholar]
22. Rahme L. G., Ausubel F. M., Cao H., Drenkard E., Goumnerov B. C., Lau G. W., Mahajan-Miklos S., Plotnikova J., Tan M. W. & other authors ( 2000). Plants and animals share functionally common bacterial virulence factors. Proc Natl Acad Sci U S A 97:8815–8821 [View Article][PubMed]
    [Google Scholar]
23. Reimmann C., Beyeler M., Latifi A., Winteler H., Foglino M., Lazdunski A., Haas D. ( 1997). The global activator GacA of Pseudomonas aeruginosa PAO positively controls the production of the autoinducer N-butyryl-homoserine lactone and the formation of the virulence factors pyocyanin, cyanide, and lipase. Mol Microbiol 24:309–319 [View Article][PubMed]
    [Google Scholar]
24. Roucourt B., Lecoutere E., Chibeu A., Hertveldt K., Volckaert G., Lavigne R. ( 2009). A procedure for systematic identification of bacteriophage–host interactions of P. aeruginosa phages. Virology 387:50–58 [View Article][PubMed]
    [Google Scholar]
25. Thibodeau S. A., Fang R., Joung J. K. ( 2004). High-throughput beta-galactosidase assay for bacterial cell-based reporter systems. Biotechniques 36:410–415[PubMed]
    [Google Scholar]
26. Ventre I., Goodman A. L., Vallet-Gely I., Vasseur P., Soscia C., Molin S., Bleves S., Lazdunski A., Lory S., Filloux A. ( 2006). Multiple sensors control reciprocal expression of Pseudomonas aeruginosa regulatory RNA and virulence genes. Proc Natl Acad Sci U S A 103:171–176 [View Article][PubMed]
    [Google Scholar]