1887

Abstract

Oxidative damage to DNA results in the occurrence of 7,8-dihydro-8-oxoguanine (8-oxoG) in the genome. In eubacteria, repair of such damage is initiated by two major base-excision repair enzymes, MutM and MutY. We generated a MutY-deficient strain of to investigate the role of this enzyme in DNA repair. The MutY deficiency in did not result in either a noteworthy susceptibility to oxidative stress or an increase in the mutation rate. However, rifampicin-resistant isolates of the MutY-deficient strain showed distinct mutations in the rifampicin-resistance-determining region of . Besides the expected C to A (or G to T) mutations, an increase in A to C (or T to G) mutations was also observed. Biochemical characterization of mycobacterial MutY ( and ) revealed an expected excision of A opposite 8-oxoG in DNA. Additionally, excision of G and T opposite 8-oxoG was detected. MutY formed complexes with DNA containing 8-oxoG : A, 8-oxoG : G or 8-oxoG : T but not 8-oxoG : C pairs. Primer extension reactions in cell-free extracts of suggested error-prone incorporation of nucleotides into the DNA. Based on these observations, we discuss the physiological role of MutY in specific mutation prevention in mycobacteria.

Loading

Article metrics loading...

/content/journal/micro/10.1099/mic.0.033621-0
2010-01-01
2024-04-25
Loading full text...

Full text loading...

/deliver/fulltext/micro/156/1/88.html?itemId=/content/journal/micro/10.1099/mic.0.033621-0&mimeType=html&fmt=ahah

References

  1. Au K. G., Clark S., Miller J. H., Modrich P. 1989; Escherichia coli mutY gene encodes an adenine glycosylase active on G/A mispairs. Proc Natl Acad Sci U S A 86:8877–8881
    [Google Scholar]
  2. Boshoff H. I., Reed M. B., Barry C. E. III, Mizrahi V. 2003; DnaE2 polymerase contributes to in vivo survival and the emergence of drug resistance in Mycobacterium tuberculosis. Cell 113:183–193
    [Google Scholar]
  3. Bruner S. D., Norman D. P. G., Fromme J. C., Verdine G. L. 2000; Structural and mechanistic studies on repair of 8-oxoguanine in mammalian cells. Cold Spring Harb Symp Quant Biol 65:103–111
    [Google Scholar]
  4. Cole S. T., Brosch R., Parkhill J., Garnier T., Churcher C., Harris D., Gordon S. V., Eiglmeier K., Gas S. other authors 1998; Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Nature 393:537–544
    [Google Scholar]
  5. David H. L. 1970; Probability distribution of drug-resistant mutants in unselected populations of Mycobacterium tuberculosis. Appl Microbiol 20:810–814
    [Google Scholar]
  6. David S. S., O'Shea L. O., Kundu S. 2007; Base excision repair of oxidative DNA damage. Nature 447:941–950
    [Google Scholar]
  7. Davis E. O., Forse L. N. 2009; DNA repair: key to survival?. In Mycobacterium: Genomics and Molecular Biology pp 79–119 Edited by Parish T., Brown A. London: Caister Academic Press;
    [Google Scholar]
  8. Delaney S., Neeley W. L., Delaney J. C., Essigmann J. M. 2007; The substrate specificity of MutY for hyperoxidized guanine lesions in vivo. Biochemistry 46:1448–1455
    [Google Scholar]
  9. Dheenadhayalan V., Delogu G., Brennan M. J. 2006; Expression of the PE_PGRS 33 protein in Mycobacterium smegmatis triggers necrosis in macrophages and enhanced mycobacterial survival. Microbes Infect 8:262–272
    [Google Scholar]
  10. Dos Vultos T., Blazquez J., Rauzier J., Matic I., Gicquel B. 2006; Identification of nudix hydrolase family members with an antimutator role in Mycobacterium tuberculosis and Mycobacterium smegmatis. J Bacteriol 188:3159–3161
    [Google Scholar]
  11. Farr S. B., Kogoma T. 1991; Oxidative stress response in Escherichia coli and Salmonella typhimurium. Microbiol Rev 55:561–585
    [Google Scholar]
  12. Fowler R. G., White S. J., Koyama C., Moore S. C., Dunn R. L., Schaaper R. M. 2003; Interactions among the Escherichia coli mutT, mutM and mutY damage prevention pathways. DNA Repair (Amst 2:159–173
    [Google Scholar]
  13. Fraga C. G., Shigenaga M. K., Park J.-W., Degan P., Ames B. N. 1990; Oxidative damage to DNA during aging: 8-hydroxy-2′ deoxyguanosine in rat organ DNA and urine. Proc Natl Acad Sci U S A 87:4533–4537
    [Google Scholar]
  14. Jain R., Kumar P., Varshney U. 2007; A distinct role of formamidopyrimidine DNA glycosylase (MutM) in down-regulation of accumulation of G, C mutations and protection against oxidative stress in mycobacteria. DNA Repair (Amst 6:1774–1785
    [Google Scholar]
  15. Kurthkoti K., Kumar P., Jain R., Varshney U. 2008; Important role of the nucleotide excision repair pathway in Mycobacterium smegmatis in conferring protection against commonly encountered DNA-damaging agents. Microbiology 154:2776–2785
    [Google Scholar]
  16. Lagier B., Pelicic V., Lecossier D., Prod'hom G., Rauzier J., Guilhot C., Gicquel B., Hance A. J. 1998; Identification of genetic loci implicated in the survival of Mycobacterium smegmatis in human mononuclear phagocytes. Mol Microbiol 29:465–475
    [Google Scholar]
  17. Lu A. L., Chang D. Y. 1988; Repair of single base pair transversion mismatches of Escherichia coli in vitro: correction of certain A/G mismatch is independent of dam methylation and host mutHLS gene function. Genetics 118:593–600
    [Google Scholar]
  18. Maki H., Sekiguchi M. 1992; MutT protein specifically hydrolyses a potent mutagenic substrate for DNA synthesis. Nature 355:273–275
    [Google Scholar]
  19. Michaels M. L., Miller J. H. 1992; The GO system protects organisms from the mutagenic effect of the spontaneous lesion 8-hydroxyguanine (7,8-dihydro-8-oxoguanine. J Bacteriol 174:6321–6325
    [Google Scholar]
  20. Michaels M. L., Cruz C., Grollmant A. P., Miller J. H. 1992; Evidence that MutY and MutM combine to prevent mutations by an oxidatively damaged form of guanine in DNA. Proc Natl Acad Sci U S A 89:7022–7025
    [Google Scholar]
  21. Mizrahi V. S., Andersen S. J. 1998; DNA repair in Mycobacterium tuberculosis. What have we learnt from the genome sequence?. Mol Microbiol 29:1331–1339
    [Google Scholar]
  22. Mo J.-Y., Maki H., Sekiguchi M. 1992; Hydrolytic elimination of a mutagenic nucleotide, 8-oxodGTP, by human 18-kilodalton protein: sanitization of nucleotide pool. Proc Natl Acad Sci U S A 89:11021–11025
    [Google Scholar]
  23. Moreland N. J., Charlier C., Dingley A. J., Baker E. N., Lott J. S. 2009; Making sense of a missense mutation: characterization of MutT2, a Nudix hydrolase from Mycobacterium tuberculosis, and the G58R mutant encoded in W-Beijing strains of M. tuberculosis. Biochemistry 48:699–708
    [Google Scholar]
  24. Pelicic V., Jackson M., Reyrat J. M., Jacobs W. R. Jr, Gicquel B., Guilhot C. 1997; Efficient allelic exchange and transposon mutagenesis in Mycobacterium tuberculosis. Proc Natl Acad Sci U S A 94:10955–10960
    [Google Scholar]
  25. Sanders L. H., Sudhakaran J., Sutton M. D. 2009; The GO repair system prevents ROS-induced mutagenesis and killing in Psuedomonas aeruginosa. FEMS Microbiol Lett 294:89–96
    [Google Scholar]
  26. Schlosser-Silverman E., Elgrably-Weiss M., Rosenshine I., Kohen R., Altuvia S. 2000; Characterization of Escherichia coli DNA lesions generated within J774 macrophages. J Bacteriol 182:5225–5230
    [Google Scholar]
  27. Shimizu M., Gruz P., Kamiya H., Kim S. R., Pisani F. M., Masutani C., Kanke Y., Harashima H., Hanaoka F., Nohmi T. 2003; Erroneous incorporation of oxidized DNA precursors by Y-family DNA polymerases. EMBO Rep 4:269–273
    [Google Scholar]
  28. Sidorenko V. S., Rot M. A., Filipenko M. L., Nevinsky G. A., Zharkov D. O. 2008; Novel DNA glycosylases from Mycobacterium tuberculosis. Biochemistry (Mosc 73:442–450
    [Google Scholar]
  29. Snapper S. B., Melton R. E., Mustafa S., Kieser T., Jacobs W. R. Jr 1990; Isolation and characterization of efficient plasmid transformation mutants of Mycobacterium smegmatis. Mol Microbiol 4:1911–1919
    [Google Scholar]
  30. Srinath T., Bharti S. K., Varshney U. 2007; Substrate specificities and functional characterization of a thermo-tolerant uracil DNA glycosylase (UdgB) from Mycobacterium tuberculosis. DNA Repair (Amst 6:1517–1528
    [Google Scholar]
  31. Steenken S., Jovanovic S. V. 1997; How easily oxidizable is DNA? One-electron reduction potentials of adenosine and guanosine radicals in aqueous solution. J Am Chem Soc 119:617–618
    [Google Scholar]
  32. Tajiri T., Maki H., Sekiguchi M. 1995; Functional cooperation of MutT, MutM and MutY proteins in preventing mutations caused by spontaneous oxidation of guanine nucleotide in Escherichia coli. Mutat Res 336:257–267
    [Google Scholar]
  33. Tsai-Wu J. J., Liu H. F., Lu A. L. 1992; Escherichia coli MutY protein has both N-glycosylase and apurinic/apyrimidinic endonuclease activities on A.C and A.G mispairs. Proc Natl Acad Sci U S A 89:8779–8783
    [Google Scholar]
  34. Venkatesh J., Kumar P., Krishna P. S., Manjunath R., Varshney U. 2003; Importance of uracil DNA glycosylase in Pseudomonas aeruginosa and Mycobacterium smegmatis, G+C-rich bacteria, in mutation prevention, tolerance to acidified nitrite, and endurance in mouse macrophages. J Biol Chem 278:24350–24358
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/micro/10.1099/mic.0.033621-0
Loading
/content/journal/micro/10.1099/mic.0.033621-0
Loading

Data & Media loading...

Supplements

Supplementary material 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error