DNA microarray analysis of global gene regulation by A-factor in Streptomyces griseus

References

1. Ando N., Ueda K., Horinouchi S. 1997; A Streptomyces griseus gene ( sgaA) suppresses the growth disturbance caused by high osmolality and a high concentration of A-factor during early growth. Microbiology 143:2715–2723
   [Google Scholar]
2. Chandra G., Chater K. F. 2008; Evolutionary flux of potentially bldA-dependent Streptomyces genes containing the rare leucine codon TTA. Antonie Van Leeuwenhoek 94:111–126
   [Google Scholar]
3. Han W. D., Kawamoto S., Hosoya Y., Fujita M., Sadaie Y., Suzuki K., Ohashi Y., Kawamura F., Ochi K. 1998; A novel sporulation-control gene ( spo0M) of Bacillus subtilis with a σ ^H-regulated promoter. Gene 217:31–40
   [Google Scholar]
4. Hirano S., Kato J., Ohnishi Y., Horinouchi S. 2006; Control of the Streptomyces subtilisin inhibitor gene by AdpA in the A-factor regulatory cascade in Streptomyces griseus . J Bacteriol 188:6207–6216
   [Google Scholar]
5. Hokamp K., Roche F. M., Acab M., Rousseau M. E., Kuo B., Goode D., Aeschliman D., Bryan J., Babiuk L. A. other authors 2004; ArrayPipe: a flexible processing pipeline for microarray data. Nucleic Acids Res 32:W457–W459
   [Google Scholar]
6. Horinouchi S. 2007; Mining and polishing of the treasure trove in the bacterial genus Streptomyces . Biosci Biotechnol Biochem 71:283–299
   [Google Scholar]
7. Horinouchi S., Beppu T. 2007; Hormonal control by A-factor of morphological development and secondary metabolism in Streptomyces . Proc Jpn Acad Ser B Phys Biol Sci 83:277–295
   [Google Scholar]
8. Horinouchi S., Onaka H., Yamazaki H., Kameyama S., Ohnishi Y. 2000; Isolation of DNA fragments bound by transcriptional factors, AdpA and ArpA, in the A-factor regulatory cascade. Actinomycetologica 14:37–42
   [Google Scholar]
9. Kato J. Y., Suzuki A., Yamazaki H., Ohnishi Y., Horinouchi S. 2002; Control by A-factor of a metalloendopeptidase gene involved in aerial mycelium formation in Streptomyces griseus . J Bacteriol 184:6016–6025
   [Google Scholar]
10. Kato J. Y., Miyahisa I., Mashiko M., Ohnishi Y., Horinouchi S. 2004; A single target is sufficient to account for the biological effects of the A-factor receptor protein of Streptomyces griseus . J Bacteriol 186:2206–2211
    [Google Scholar]
11. Kato J. Y., Chi W.-J., Ohnishi Y., Hong S.-K., Horinouchi S. 2005a; Transcriptional control by A-factor of two trypsin genes in Streptomyces griseus . J Bacteriol 187:286–295
    [Google Scholar]
12. Kato J. Y., Ohnishi Y., Horinouchi S. 2005b; Autorepression of AdpA of the AraC/XylS family, a key transcriptional activator in the A-factor regulatory cascade in Streptomyces griseus . J Mol Biol 350:12–26
    [Google Scholar]
13. Kato J. Y., Funa N., Watanabe H., Ohnishi Y., Horinouchi S. 2007; Biosynthesis of γ-butyrolactone autoregulators that switch on secondary metabolism and morphological development in Streptomyces . Proc Natl Acad Sci U S A 104:2378–2383
    [Google Scholar]
14. Kawamoto S., Watanabe H., Hesketh A., Ensign J. C., Ochi K. 1997; Expression analysis of the ssgA gene product, associated with sporulation and cell division in Streptomyces griseus . Microbiology 143:1077–1086
    [Google Scholar]
15. Kendrick K. E., Ensign J. C. 1983; Sporulation of Streptomyces griseus in submerged culture. J Bacteriol 155:357–366
    [Google Scholar]
16. Komatsu M., Takano H., Hiratsuka T., Ishigaki Y., Shimada K., Beppu T., Ueda K. 2006; Proteins encoded by the conservon of Streptomyces coelicolor A3(2) comprise a membrane-associated heterocomplex that resembles eukaryotic G protein-coupled regulatory system. Mol Microbiol 62:1534–1546
    [Google Scholar]
17. McCue L. A., Kwak J., Wang J., Kendrick K. E. 1996; Analysis of a gene that suppresses the morphological defect of bald mutants of Streptomyces griseus . J Bacteriol 178:2867–2875
    [Google Scholar]
18. Ohnishi Y., Kameyama S., Onaka H., Horinouchi S. 1999; The A-factor regulatory cascade leading to streptomycin biosynthesis in Streptomyces griseus: identification of a target gene of the A-factor receptor. Mol Microbiol 34:102–111
    [Google Scholar]
19. Ohnishi Y., Yamazaki H., Kato J., Tomono A., Horinouchi S. 2005; AdpA, a central transcriptional regulator in the A-factor regulatory cascade that leads to morphological development and secondary metabolism in Streptomyces griseus . Biosci Biotechnol Biochem 69:431–439
    [Google Scholar]
20. Ohnishi Y., Ishikawa J., Hara H., Suzuki H., Ikenoya M., Ikeda H., Yamashita A., Hattori M., Horinouchi S. 2008; Genome sequence of the streptomycin-producing microorganism Streptomyces griseus IFO 13350. J Bacteriol 190:4050–4060
    [Google Scholar]
21. Onaka H., Horinouchi S. 1997; DNA-binding activity of the A-factor receptor protein and its recognition DNA sequences. Mol Microbiol 24:991–1000
    [Google Scholar]
22. Takano E. 2006; γ-Butyrolactones: Streptomyces signalling molecules regulating antibiotic production and differentiation. Curr Opin Microbiol 9:287–294
    [Google Scholar]
23. Tomono A., Tsai Y., Yamazaki H., Ohnishi Y., Horinouchi S. 2005a; Transcriptional control by A-factor of strR, the pathway-specific transcriptional activator for streptomycin biosynthesis in Streptomyces griseus . J Bacteriol 187:5595–5604
    [Google Scholar]
24. Tomono A., Tsai Y., Ohnishi Y., Horinouchi S. 2005b; Three chymotrypsin genes are members of the AdpA regulon in the A-factor regulatory cascade in Streptomyces griseus . J Bacteriol 187:6341–6353
    [Google Scholar]
25. Ueda K., Oinuma K., Ikeda G., Hosono K., Ohnishi Y., Horinouchi S., Beppu T. 2002; AmfS, an extracellular peptidic morphogen in Streptomyces griseus . J Bacteriol 184:1488–1492
    [Google Scholar]
26. Ueda K., Takano H., Nishimoto M., Inaba H., Beppu T. 2005; Dual transcriptional control of amfTSBA, which regulates the onset of cellular differentiation in Streptomyces griseus . J Bacteriol 187:135–142
    [Google Scholar]
27. Vujaklija D., Ueda K., Hong S.-K., Beppu T., Horinouchi S. 1991; Identification of an A-factor-dependent promoter in the streptomycin biosynthetic gene cluster of Streptomyces griseus . Mol Gen Genet 229:119–128
    [Google Scholar]
28. Yamazaki H., Ohnishi Y., Horinouchi S. 2000; An A-factor-dependent extracytoplasmic function sigma factor ( σ ^AdsA) that is essential for morphological development in Streptomyces griseus . J Bacteriol 182:4596–4605
    [Google Scholar]
29. Yamazaki H., Ohnishi Y., Horinouchi S. 2003a; Transcriptional switch on of ssgA by A-factor, which is essential for spore septum formation in Streptomyces griseus . J Bacteriol 185:1273–1283
    [Google Scholar]
30. Yamazaki H., Takano Y., Ohnishi Y., Horinouchi S. 2003b; amfR, an essential gene for aerial mycelium formation, is a member of the AdpA regulon in the A-factor regulatory cascade in Streptomyces griseus . Mol Microbiol 50:1173–1187
    [Google Scholar]
31. Yamazaki H., Tomono A., Ohnishi Y., Horinouchi S. 2004; DNA-binding specificity of AdpA, a transcriptional activator in the A-factor regulatory cascade in Streptomyces griseus . Mol Microbiol 53:555–572
    [Google Scholar]