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Bacterial pathogens sense and respond to host-derived metabolites to regulate virulence and establish successful infections. d-Serine, an amino acid abundant in some extraintestinal environments but scarce in the intestine, functions as a key niche-specific signal that influences the tissue tropism of different Escherichia coli pathotypes. In enterohaemorrhagic E. coli, a major foodborne pathogen causing severe human disease, d-serine exposure triggers significant transcriptional changes distinct from those seen in extraintestinal pathotypes. Recent publication of our extensive d-serine pathotype transcriptome data on the open database MORF included genome reannotation. This revealed the previously unannotated small regulatory RNA SgrS as being the most significantly upregulated transcript in response to d-serine exposure. Despite its canonical role in managing glucose-phosphate stress by inhibiting glucose uptake, here, we show that d-serine-mediated growth inhibition occurs independently of SgrS and extends beyond glucose metabolism, affecting growth across diverse carbon sources with varying transport mechanisms. Growth inhibition persisted following the deletion of sgrS and could not be alleviated by pyruvate or pantothenate supplementation, while l-serine provided partial rescue, suggesting disruption of fundamental metabolic processes. The novel observation that d-serine induces SgrS suggests a wider regulatory role beyond managing glucose phosphate stress during impeded glycolysis. Moreover, we describe key distinctions between d-serine toxicity in EHEC and previous reports with laboratory E. coli strains, highlighting the importance of strain-specific metabolic and regulatory architecture in response to host-associated cues.