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Graphical Abstract

and are homologues of MinD, and play a role in mycobacterial divisome assembly.

Abstract

A major virulence trait of () is its ability to enter a dormant state within its human host. Since cell division is intimately linked to metabolic shut down, understanding the mechanism of septum formation and its integration with other events in the division pathway is likely to offer clues to the molecular basis of dormancy. The genome lacks obvious homologues of several conserved cell division proteins, and this study was aimed at identifying and functionally characterising mycobacterial homologues of the septum site specification protein MinD ( MinD). Sequence homology based analyses suggested that the genomes of both and the saprophyte () encode two putative MinD homologues and . Of these, were found to be the true homologues, through complementation of the mutant HL1, overexpression studies, and structural comparisons. and fully complemented the mini-cell phenotype of HL1, and over-expression of in led to cell elongation and a drastic decrease in c.f.u. counts, indicating its essentiality in cell-division. MSMEG_3743 displayed ATPase activity, consistent with its containing a conserved Walker A motif. Interaction of Rv1708 with the chromosome associated proteins ScpA and ParB, implied a link between its septum formation role, and chromosome segregation. Comparative structural analyses showed Rv1708 to be closer in similarity to Ec MinD than Rv3660c. In summary we identify Rv1708 and MSMEG_3743 to be homologues of MinD, adding a critical missing piece to the mycobacterial cell division puzzle.

Funding
This study was supported by the:
  • Council of Scientific and Industrial Research (CSIR), Govt. of India (Award BSC104)
    • Principle Award Recipient: TirumalaiR Raghunand
  • Department of Biotechnology (DBT), Govt. of India (Award BT/PR15411/BRB/10/924/2011)
    • Principle Award Recipient: TirumalaiR Raghunand
  • This is an open-access article distributed under the terms of the Creative Commons Attribution License. The Microbiology Society waived the open access fees for this article.
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2023-08-01
2025-04-25
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References

  1. Adler HI, Fisher WD, Cohen A, Hardigree AA. Miniature Escherichia coli cells deficient in DNA. Proc Natl Acad Sci U S A 1967; 57:321–326 [View Article] [PubMed]
    [Google Scholar]
  2. Jaffé A, D’Ari R, Hiraga S. Minicell-forming mutants of Escherichia coli: production of minicells and anucleate rods. J Bacteriol 1988; 170:3094–3101 [View Article] [PubMed]
    [Google Scholar]
  3. Taviti AC, Beuria TK. MinD directly interacting with FtsZ at the H10 helix suggests a model for robust activation of MinC to destabilize FtsZ polymers. Biochem J 2017; 474:3189–3205 [View Article] [PubMed]
    [Google Scholar]
  4. Howery KE, Clemmer KM, Şimşek E, Kim M, Rather PN. Regulation of the min cell division inhibition complex by the Rcs phosphorelay in Proteus mirabilis. J Bacteriol 2015; 197:2499–2507 [View Article] [PubMed]
    [Google Scholar]
  5. Lee H-L, Chiang I-C, Liang S-Y, Lee D-Y, Chang G-D et al. Quantitative proteomics analysis reveals the min system of Escherichia coli modulates reversible protein association with the inner membrane. Mol Cell Proteomics 2016; 15:1572–1583 [View Article] [PubMed]
    [Google Scholar]
  6. Huang L, Qin Y, Yan Q, Lin G, Huang L et al. MinD plays an important role in Aeromonas hydrophila adherence to Anguilla japonica mucus. Gene 2015; 565:275–281 [View Article] [PubMed]
    [Google Scholar]
  7. Parti RP, Biswas D, Helgeson S, Michael FS, Cox A et al. Attenuated virulence of min operon mutants of Neisseria gonorrhoeae and their interactions with human urethral epithelial cells. Microbes Infect 2011; 13:545–554 [View Article] [PubMed]
    [Google Scholar]
  8. Nishida Y, Takeuchi H, Morimoto N, Umeda A, Kadota Y et al. Intrinsic characteristics of min proteins on the cell division of Helicobacter pylori. FEMS Microbiol Lett 2016; 363:fnw025 [View Article] [PubMed]
    [Google Scholar]
  9. Kaval KG, Hauf S, Rismondo J, Hahn B, Halbedel S. Genetic dissection of DivIVA functions in Listeria monocytogenes. J Bacteriol 2017; 199:e00421-17 [View Article] [PubMed]
    [Google Scholar]
  10. Martos A, Jiménez M, Rivas G, Schwille P. Towards a bottom-up reconstitution of bacterial cell division. Trends Cell Biol 2012; 22:634–643 [View Article] [PubMed]
    [Google Scholar]
  11. Szeto TH, Rowland SL, Rothfield LI, King GF. Membrane localization of MinD is mediated by a C-terminal motif that is conserved across eubacteria, archaea, and chloroplasts. Proc Natl Acad Sci U S A 2002; 99:15693–15698 [View Article] [PubMed]
    [Google Scholar]
  12. Watanabe Y, Motohashi K, Yoshida M. Roles of the two ATP binding sites of ClpB from Thermus thermophilus. J Biol Chem 2002; 277:5804–5809 [View Article] [PubMed]
    [Google Scholar]
  13. Wiese C, Hinz JM, Tebbs RS, Nham PB, Urbin SS et al. Disparate requirements for the Walker A and B ATPase motifs of human RAD51D in homologous recombination. Nucleic Acids Res 2006; 34:2833–2843 [View Article] [PubMed]
    [Google Scholar]
  14. Kieser KJ, Rubin EJ. How sisters grow apart: mycobacterial growth and division. Nat Rev Microbiol 2014; 12:550–562 [View Article] [PubMed]
    [Google Scholar]
  15. Thanky NR, Young DB, Robertson BD. Unusual features of the cell cycle in Mycobacteria: polar-restricted growth and the snapping-model of cell division. Tuberculosis 2007; 87:231–236 [View Article] [PubMed]
    [Google Scholar]
  16. Aldridge BB, Fernandez-Suarez M, Heller D, Ambravaneswaran V, Irimia D et al. Asymmetry and aging of mycobacterial cells lead to variable growth and antibiotic susceptibility. Science 2012; 335:100–104 [View Article] [PubMed]
    [Google Scholar]
  17. Joyce G, Williams KJ, Robb M, Noens E, Tizzano B et al. Cell division site placement and asymmetric growth in Mycobacteria. PLoS One 2012; 7:e44582 [View Article] [PubMed]
    [Google Scholar]
  18. Santi I, Dhar N, Bousbaine D, Wakamoto Y, McKinney JD. Single-cell dynamics of the chromosome replication and cell division cycles in Mycobacteria. Nat Commun 2013; 4:2470 [View Article] [PubMed]
    [Google Scholar]
  19. Gaiwala Sharma SS, Kishore V, Raghunand TR. Identification and functional annotation of mycobacterial septum formation genes using cell division mutants of Escherichia coli. Res Microbiol 2016; 167:142–148 [View Article] [PubMed]
    [Google Scholar]
  20. Hegde SR, Rajasingh H, Das C, Mande SS, Mande SC. Understanding communication signals during mycobacterial latency through predicted genome-wide protein interactions and boolean modeling. PLoS One 2012; 7:e33893 [View Article] [PubMed]
    [Google Scholar]
  21. Singh A, Mai D, Kumar A, Steyn AJC. Dissecting virulence pathways of Mycobacterium tuberculosis through protein-protein association. Proc Natl Acad Sci U S A 2006; 103:11346–11351 [View Article] [PubMed]
    [Google Scholar]
  22. Lew JM, Kapopoulou A, Jones LM, Cole ST. TubercuList--10 years after. Tuberculosis 2011; 91:1–7 [View Article] [PubMed]
    [Google Scholar]
  23. Lechat P, Hummel L, Rousseau S, Moszer I. GenoList: an integrated environment for comparative analysis of microbial genomes. Nucleic Acids Res 2008; 36:D469–D474 [View Article] [PubMed]
    [Google Scholar]
  24. Kanehisa M, Goto S. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res 2000; 28:27–30 [View Article] [PubMed]
    [Google Scholar]
  25. Sievers F, Higgins DG. Clustal Omega, accurate alignment of very large numbers of sequences. Methods Mol Biol 2014; 1079:105–116 [View Article] [PubMed]
    [Google Scholar]
  26. Sievers F, Wilm A, Dineen D, Gibson TJ, Karplus K et al. Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Mol Syst Biol 2011; 7:539 [View Article] [PubMed]
    [Google Scholar]
  27. Gouet P, Robert X, Courcelle E. ESPript/ENDscript: extracting and rendering sequence and 3D information from atomic structures of proteins. Nucleic Acids Res 2003; 31:3320–3323 [View Article] [PubMed]
    [Google Scholar]
  28. Cserzö M, Wallin E, Simon I, von Heijne G, Elofsson A. Prediction of transmembrane alpha-helices in prokaryotic membrane proteins: the dense alignment surface method. Protein Eng 1997; 10:673–676 [View Article] [PubMed]
    [Google Scholar]
  29. Kyte J, Doolittle RF. A simple method for displaying the hydropathic character of a protein. J Mol Biol 1982; 157:105–132 [View Article] [PubMed]
    [Google Scholar]
  30. Wu W, Park KT, Holyoak T, Lutkenhaus J. Determination of the structure of the MinD-ATP complex reveals the orientation of MinD on the membrane and the relative location of the binding sites for MinE and MinC. Mol Microbiol 2011; 79:1515–1528 [View Article] [PubMed]
    [Google Scholar]
  31. Jumper J, Evans R, Pritzel A, Green T, Figurnov M et al. Highly accurate protein structure prediction with AlphaFold. Nature 2021; 596:583–589 [View Article] [PubMed]
    [Google Scholar]
  32. Laskowski RA, Jabłońska J, Pravda L, Vařeková RS, Thornton JM. PDBsum: structural summaries of PDB entries. Protein Sci 2018; 27:129–134 [View Article] [PubMed]
    [Google Scholar]
  33. Lyskov S, Gray JJ. The RosettaDock server for local protein-protein docking. Nucleic Acids Res 2008; 36:W233–W238 [View Article] [PubMed]
    [Google Scholar]
  34. Slayden RA, Knudson DL, Belisle JT. Identification of cell cycle regulators in Mycobacterium tuberculosis by inhibition of septum formation and global transcriptional analysis. Microbiology 2006; 152:1789–1797 [View Article] [PubMed]
    [Google Scholar]
  35. Zhang M, Hu Y, Jia J, Gao H, He Y. A plant MinD homologue rescues Escherichia coli HL1 mutant (DeltaMinDE) in the absence of MinE. BMC Microbiol 2009; 9:101 [View Article] [PubMed]
    [Google Scholar]
  36. Blokpoel MCJ, Murphy HN, O’Toole R, Wiles S, Runn ESC et al. Tetracycline-inducible gene regulation in Mycobacteria. Nucleic Acids Res 2005; 33:e22 [View Article] [PubMed]
    [Google Scholar]
  37. Carroll P, Muttucumaru DGN, Parish T. Use of a tetracycline-inducible system for conditional expression in Mycobacterium tuberculosis and Mycobacterium smegmatis. Appl Environ Microbiol 2005; 71:3077–3084 [View Article] [PubMed]
    [Google Scholar]
  38. Spratt JM, Ryan AA, Britton WJ, Triccas JA. Epitope-tagging vectors for the expression and detection of recombinant proteins in Mycobacteria. Plasmid 2005; 53:269–273 [View Article] [PubMed]
    [Google Scholar]
  39. Ma L, King GF, Rothfield L. Positioning of the MinE binding site on the MinD surface suggests a plausible mechanism for activation of the Escherichia coli MinD ATPase during division site selection. Mol Microbiol 2004; 54:99–108 [View Article] [PubMed]
    [Google Scholar]
  40. Ayed SH, Cloutier AD, McLeod LJ, Foo ACY, Damry AM et al. Dissecting the role of conformational change and membrane binding by the bacterial cell division regulator MinE in the stimulation of MinD ATPase activity. J Biol Chem 2017; 292:20732–20743 [View Article] [PubMed]
    [Google Scholar]
  41. Kamakaka RT, Bulger M, Kaufman PD, Stillman B, Kadonaga JT. Postreplicative chromatin assembly by Drosophila and human chromatin assembly factor 1. Mol Cell Biol 1996; 16:810–817 [View Article] [PubMed]
    [Google Scholar]
  42. Bulger M, Ito T, Kamakaka RT, Kadonaga JT. Assembly of regularly spaced nucleosome arrays by Drosophila chromatin assembly factor 1 and a 56-kDa histone-binding protein. Proc Natl Acad Sci U S A 1995; 92:11726–11730 [View Article] [PubMed]
    [Google Scholar]
  43. Ziganshin AU, Ziganshina LE, King BE, Burnstock G. Characteristics of ecto-ATPase of Xenopus oocytes and the inhibitory actions of suramin on ATP breakdown. Pflugers Arch 1995; 429:412–418 [View Article] [PubMed]
    [Google Scholar]
  44. Deyrup AT, Krishnan S, Cockburn BN, Schwartz NB. Deletion and site-directed mutagenesis of the ATP-binding motif (P-loop) in the bifunctional murine ATP-sulfurylase/adenosine 5’-phosphosulfate kinase enzyme. J Biol Chem 1998; 273:9450–9456 [View Article] [PubMed]
    [Google Scholar]
  45. Park K-T, Wu W, Lovell S, Lutkenhaus J. Mechanism of the asymmetric activation of the MinD ATPase by MinE. Mol Microbiol 2012; 85:271–281 [View Article] [PubMed]
    [Google Scholar]
  46. Hu Z, Lutkenhaus J. Topological regulation of cell division in E. coli. spatiotemporal oscillation of MinD requires stimulation of its ATPase by MinE and phospholipid. Mol Cell 2001; 7:1337–1343 [View Article] [PubMed]
    [Google Scholar]
  47. Xu Q, Christen B, Chiu H-J, Jaroszewski L, Klock HE et al. Structure of the pilus assembly protein TadZ from Eubacterium rectale: implications for polar localization. Mol Microbiol 2012; 83:712–727 [View Article] [PubMed]
    [Google Scholar]
  48. Thompson SR, Wadhams GH, Armitage JP. The positioning of cytoplasmic protein clusters in bacteria. Proc Natl Acad Sci 2006; 103:8209–8214 [View Article] [PubMed]
    [Google Scholar]
  49. Savage DF, Afonso B, Chen AH, Silver PA. Spatially ordered dynamics of the bacterial carbon fixation machinery. Science 2010; 327:1258–1261 [View Article] [PubMed]
    [Google Scholar]
  50. Erdmann N, Petroff T, Funnell BE. Intracellular localization of P1 ParB protein depends on ParA and parS. Proc Natl Acad Sci 1999; 96:14905–14910 [View Article] [PubMed]
    [Google Scholar]
  51. Maloney E, Madiraju M, Rajagopalan M. Overproduction and localization of Mycobacterium tuberculosis ParA and ParB proteins. Tuberculosis 2009; 89 Suppl 1:S65–S69 [View Article] [PubMed]
    [Google Scholar]
  52. Egan AJF, Vollmer W. The stoichiometric divisome: a hypothesis. Front Microbiol 2015; 6:455 [View Article] [PubMed]
    [Google Scholar]
  53. Santi I, McKinney JD. Chromosome organization and replisome dynamics in Mycobacterium smegmatis. mBio 2015; 6: [View Article] [PubMed]
    [Google Scholar]
  54. Trojanowski D, Ginda K, Pióro M, Hołówka J, Skut P et al. Choreography of the Mycobacterium replication machinery during the cell cycle. mBio 2015; 6:e02125 [View Article] [PubMed]
    [Google Scholar]
  55. Di Ventura B, Knecht B, Andreas H, Godinez WJ, Fritsche M et al. Chromosome segregation by the Escherichia coli min system. Mol Syst Biol 2013; 9:686 [View Article] [PubMed]
    [Google Scholar]
  56. Jakimowicz D, Brzostek A, Rumijowska-Galewicz A, Żydek P, Dołzbłasz A et al. Characterization of the mycobacterial chromosome segregation protein ParB and identification of its target in Mycobacterium smegmatis. Microbiology 2007; 153:4050–4060 [View Article] [PubMed]
    [Google Scholar]
  57. Hong W, Deng W, Xie J. The structure, function, and regulation of Mycobacterium FtsZ. Cell Biochem Biophys 2013; 65:97–105 [View Article] [PubMed]
    [Google Scholar]
  58. Ansong C, Ortega C, Payne SH, Haft DH, Chauvignè-Hines LM et al. Identification of widespread adenosine nucleotide binding in Mycobacterium tuberculosis. Chem Biol 2013; 20:123–133 [View Article] [PubMed]
    [Google Scholar]
  59. Wolfe LM, Veeraraghavan U, Idicula-Thomas S, Schürer S, Wennerberg K et al. A chemical proteomics approach to profiling the ATP-binding proteome of Mycobacterium tuberculosis. Mol Cell Proteomics 2013; 12:1644–1660 [View Article] [PubMed]
    [Google Scholar]
  60. Lutkenhaus J. The ParA/MinD family puts things in their place. Trends Microbiol 2012; 20:411–418 [View Article] [PubMed]
    [Google Scholar]
  61. Donovan C, Schwaiger A, Krämer R, Bramkamp M. Subcellular localization and characterization of the ParAB system from Corynebacterium glutamicum. J Bacteriol 2010; 192:3441–3451 [View Article] [PubMed]
    [Google Scholar]
  62. Le Quéré B, Ghigo J-M. BcsQ is an essential component of the Escherichia coli cellulose biosynthesis apparatus that localizes at the bacterial cell pole. Mol Microbiol 2009; 72:724–740 [View Article] [PubMed]
    [Google Scholar]
  63. Perez-Cheeks BA, Planet PJ, Sarkar IN, Clock SA, Xu Q et al. The product of tadZ, a new member of the parA/minD superfamily, localizes to a pole in Aggregatibacter actinomycetemcomitans. Mol Microbiol 2012; 83:694–711 [View Article] [PubMed]
    [Google Scholar]
  64. Ringgaard S, Schirner K, Davis BM, Waldor MK. A family of ParA-like ATPases promotes cell pole maturation by facilitating polar localization of chemotaxis proteins. Genes Dev 2011; 25:1544–1555 [View Article] [PubMed]
    [Google Scholar]
  65. Szardenings F, Guymer D, Gerdes K. ParA ATPases can move and position DNA and subcellular structures. Curr Opin Microbiol 2011; 14:712–718 [View Article] [PubMed]
    [Google Scholar]
  66. Thanbichler M, Shapiro L. MipZ, a spatial regulator coordinating chromosome segregation with cell division in Caulobacter. Cell 2006; 126:147–162 [View Article] [PubMed]
    [Google Scholar]
  67. Ramirez MV, Dawson CC, Crew R, England K, Slayden RA. MazF6 toxin of Mycobacterium tuberculosis demonstrates antitoxin specificity and is coupled to regulation of cell growth by a Soj-like protein. BMC Microbiol 2013; 13:240 [View Article] [PubMed]
    [Google Scholar]
  68. Sievers J, Raether B, Perego M, Errington J. Characterization of the parB-like yyaA gene of Bacillus subtilis. J Bacteriol 2002; 184:1102–1111 [View Article] [PubMed]
    [Google Scholar]
  69. Bartosik AA, Mierzejewska J, Thomas CM, Jagura-Burdzy G. ParB deficiency in Pseudomonas aeruginosa destabilizes the partner protein ParA and affects a variety of physiological parameters. Microbiology 2009; 155:1080–1092 [View Article] [PubMed]
    [Google Scholar]
  70. Iniesta AA. ParABS system in chromosome partitioning in the bacterium Myxococcus xanthus. PLoS One 2014; 9:e86897 [View Article] [PubMed]
    [Google Scholar]
  71. Ginda K, Bezulska M, Ziółkiewicz M, Dziadek J, Zakrzewska-Czerwińska J et al. ParA of Mycobacterium smegmatis co-ordinates chromosome segregation with the cell cycle and interacts with the polar growth determinant DivIVA. Mol Microbiol 2013; 87:998–1012 [View Article] [PubMed]
    [Google Scholar]
  72. Ebersbach G, Briegel A, Jensen GJ, Jacobs-Wagner C. A self-associating protein critical for chromosome attachment, division, and polar organization in caulobacter. Cell 2008; 134:956–968 [View Article] [PubMed]
    [Google Scholar]
  73. Donovan C, Schauss A, Krämer R, Bramkamp M, Scheffers D-J. Chromosome segregation impacts on cell growth and division site selection in Corynebacterium glutamicum. PLoS One 2013; 8:e55078 [View Article] [PubMed]
    [Google Scholar]
  74. Meniche X, Otten R, Siegrist MS, Baer CE, Murphy KC et al. Subpolar addition of new cell wall is directed by DivIVA in Mycobacteria. Proc Natl Acad Sci U S A 2014; 111:E3243–51 [View Article] [PubMed]
    [Google Scholar]
  75. Treuner-Lange A, Aguiluz K, van der Does C, Gómez-Santos N, Harms A et al. PomZ, a ParA-like protein, regulates Z-ring formation and cell division in Myxococcus xanthus. Mol Microbiol 2013; 87:235–253 [View Article] [PubMed]
    [Google Scholar]
  76. Le TBK, Imakaev MV, Mirny LA, Laub MT. High-resolution mapping of the spatial organization of a bacterial chromosome. Science 2013; 342:731–734 [View Article] [PubMed]
    [Google Scholar]
  77. David A, Demarre G, Muresan L, Paly E, Barre F-X et al. The two Cis-acting sites, parS1 and oriC1, contribute to the longitudinal organisation of Vibrio cholerae chromosome I. PLoS Genet 2014; 10:e1004448 [View Article] [PubMed]
    [Google Scholar]
  78. Petrushenko ZM, She W, Rybenkov VV. A new family of bacterial condensins. Mol Microbiol 2011; 81:881–896 [View Article] [PubMed]
    [Google Scholar]
  79. Minnen A, Attaiech L, Thon M, Gruber S, Veening J-W. SMC is recruited to oriC by ParB and promotes chromosome segregation in Streptococcus pneumoniae. Mol Microbiol 2011; 81:676–688 [View Article] [PubMed]
    [Google Scholar]
  80. Wang X, Rudner DZ. Spatial organization of bacterial chromosomes. Curr Opin Microbiol 2014; 22:66–72 [View Article] [PubMed]
    [Google Scholar]
  81. Ginda K, Santi I, Bousbaine D, Zakrzewska-Czerwińska J, Jakimowicz D et al. The studies of ParA and ParB dynamics reveal asymmetry of chromosome segregation in Mycobacteria. Mol Microbiol 2017; 105:453–468 [View Article] [PubMed]
    [Google Scholar]
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