1887

Abstract

Microbial populations have evolved intricate networks of negotiation and communication through which they can coexist in natural and host ecosystems. The nature of these systems can be complex and they are, for the most part, poorly understood at the polymicrobial level. The Pseudomonas Quinolone Signal (PQS) and its precursor 4-hydroxy-2-heptylquinoline (HHQ) are signal molecules produced by the important nosocomial pathogen . They are known to modulate the behaviour of co-colonizing bacterial and fungal pathogens such as , and . While the structural basis for alkyl-quinolone signalling within has been studied extensively, less is known about how structural derivatives of these molecules can influence multicellular behaviour and population-level decision-making in other co-colonizing organisms. In this study, we investigated a suite of small molecules derived initially from the HHQ framework, for anti-virulence activity against ESKAPE pathogens, at the species and strain levels. Somewhat surprisingly, with appropriate substitution, loss of the alkyl chain (present in HHQ and PQS) did not result in a loss of activity, presenting a more easily accessible synthetic framework for investigation. Virulence profiling uncovered significant levels of inter-strain variation among the responses of clinical and environmental isolates to small-molecule challenge. While several lead compounds were identified in this study, further work is needed to appreciate the extent of strain-level tolerance to small-molecule anti-infectives among pathogenic organisms.

Funding
This study was supported by the:
  • National Health and Medical Research Council (Award APP1183640 2020-5)
    • Principle Award Recipient: FergalO’Gara
  • Cystic Fibrosis Foundation (Award OGARA1710)
    • Principle Award Recipient: FergalO’Gara
  • Higher Education Authority (Award TL19UCC1481/02)
    • Principle Award Recipient: F.Jerry Reen
  • Science Foundation Ireland (Award SFI/12/IP/1315)
    • Principle Award Recipient: GerardP. McGlacken
  • Health Research Board (Award MRCG-2018-16)
    • Principle Award Recipient: FergalO’Gara
  • Health Research Board (Award HRB-ILP-POR-2019-004)
    • Principle Award Recipient: FergalO’Gara
  • Science Foundation Ireland (Award 12/RC/2275_2)
    • Principle Award Recipient: F.Jerry Reen
  • This is an open-access article distributed under the terms of the Creative Commons Attribution License. This article was made open access via a Publish and Read agreement between the Microbiology Society and the corresponding author’s institution.
Loading

Article metrics loading...

/content/journal/micro/10.1099/mic.0.001303
2023-03-02
2024-04-25
Loading full text...

Full text loading...

/deliver/fulltext/micro/169/3/mic001303.html?itemId=/content/journal/micro/10.1099/mic.0.001303&mimeType=html&fmt=ahah

References

  1. Haque SZ, Haque M. The ecological community of commensal, symbiotic, and pathogenic gastrointestinal microorganisms - an appraisal. Clin Exp Gastroenterol 2017; 10:91–103 [View Article]
    [Google Scholar]
  2. Nyholm SV, McFall-Ngai MJ. A lasting symbiosis: how the Hawaiian bobtail squid finds and keeps its bioluminescent bacterial partner. Nat Rev Microbiol 2021; 19:666–679 [View Article]
    [Google Scholar]
  3. Visick KL, Stabb EV, Ruby EG. A lasting symbiosis: how Vibrio fischeri finds a squid partner and persists within its natural host. Nat Rev Microbiol 2021; 19:654–665 [View Article]
    [Google Scholar]
  4. Herrera P, Schuster L, Wentrup C, Konig L, Kempinger T et al. Molecular causes of an evolutionary shift along the parasitism-mutualism continuum in a bacterial symbiont. Proc Natl Acad Sci 2020; 117:21658–21666 [View Article]
    [Google Scholar]
  5. Patil A, Banerji R, Kanojiya P, Koratkar S, Saroj S. Bacteriophages for ESKAPE: role in pathogenicity and measures of control. Expert Rev Anti Infect Ther 2021; 19:845–865 [View Article]
    [Google Scholar]
  6. Schultz F, Anywar G, Tang H, Chassagne F, Lyles JT et al. Targeting ESKAPE pathogens with anti-infective medicinal plants from the Greater Mpigi region in Uganda. Sci Rep 2020; 10:11935 [View Article]
    [Google Scholar]
  7. Scholtz V, Vaňková E, Kašparová P, Premanath R, Karunasagar I et al. Non-thermal plasma treatment of ESKAPE pathogens: a review. Front Microbiol 2021; 12:737635 [View Article]
    [Google Scholar]
  8. Liu Y, Tong Z, Shi J, Jia Y, Deng T et al. Reversion of antibiotic resistance in multidrug-resistant pathogens using non-antibiotic pharmaceutical benzydamine. Commun Biol 2021; 4:1328 [View Article]
    [Google Scholar]
  9. Bauer R, Hoenes K, Meurle T, Hessling M, Spellerberg B. The effects of violet and blue light irradiation on ESKAPE pathogens and human cells in presence of cell culture media. Sci Rep 2021; 11:24473 [View Article]
    [Google Scholar]
  10. Cano A, Ettcheto M, Espina M, López-Machado A, Cajal Y et al. State-of-the-art polymeric nanoparticles as promising therapeutic tools against human bacterial infections. J Nanobiotechnology 2020; 18:156 [View Article]
    [Google Scholar]
  11. Fuqua C, Greenberg EP. Self perception in bacteria: quorum sensing with acylated homoserine lactones. Curr Opin Microbiol 1998; 1:183–189 [View Article] [PubMed]
    [Google Scholar]
  12. Fuqua WC, Winans SC, Greenberg EP. Quorum sensing in bacteria: the LuxR-LuxI family of cell density-responsive transcriptional regulators. J Bacteriol 1994; 176:269–275 [View Article] [PubMed]
    [Google Scholar]
  13. Miller MB, Bassler BL. Quorum sensing in bacteria. Annu Rev Microbiol 2001; 55:165–199 [View Article] [PubMed]
    [Google Scholar]
  14. Nealson KH, Platt T, Hastings JW. Cellular control of the synthesis and activity of the bacterial luminescent system. J Bacteriol 1970; 104:313–322 [View Article] [PubMed]
    [Google Scholar]
  15. Xavier KB, Bassler BL. LuxS quorum sensing: more than just a numbers game. Curr Opin Microbiol 2003; 6:191–197 [View Article] [PubMed]
    [Google Scholar]
  16. Whiteley M, Diggle SP, Greenberg EP. Progress in and promise of bacterial quorum sensing research. Nature 2017; 551:313–320 [View Article]
    [Google Scholar]
  17. Diggle SP, Gardner A, West SA, Griffin AS. Evolutionary theory of bacterial quorum sensing: when is a signal not a signal?. Phil Trans R Soc B 2007; 362:1241–1249 [View Article]
    [Google Scholar]
  18. Caro T, Allen WL. Interspecific visual signalling in animals and plants: a functional classification. Phil Trans R Soc B 2017; 372:20160344 [View Article]
    [Google Scholar]
  19. Clinton A, Rumbaugh KP. Interspecies and Interkingdom Signaling via Quorum Signals. Isr J Chem 2016; 56:265–272 [View Article]
    [Google Scholar]
  20. Feng T, Han Y, Li B, Li Z, Yu Y et al. Interspecies and intraspecies signals synergistically regulate Lysobacter enzymogenes twitching motility. Appl Environ Microbiol 2019; 85:23 [View Article]
    [Google Scholar]
  21. Hosni T, Moretti C, Devescovi G, Suarez-Moreno ZR, Fatmi MB et al. Sharing of quorum-sensing signals and role of interspecies communities in a bacterial plant disease. ISME J 2011; 5:1857–1870 [View Article] [PubMed]
    [Google Scholar]
  22. Soukarieh F, Williams P, Stocks MJ, Cámara M. Pseudomonas aeruginosa quorum sensing systems as drug discovery targets: current position and future perspectives. J Med Chem 2018; 61:10385–10402 [View Article]
    [Google Scholar]
  23. Reen FJ, Mooij MJ, Holcombe LJ, McSweeney CM, McGlacken GP et al. The Pseudomonas quinolone signal (PQS), and its precursor HHQ, modulate interspecies and interkingdom behaviour. FEMS Microbiol Ecol 2011; 77:413–428 [View Article] [PubMed]
    [Google Scholar]
  24. Toyofuku M, Nakajima-Kambe T, Uchiyama H, Nomura N. The effect of a cell-to-cell communication molecule, Pseudomonas quinolone signal (PQS), produced by P. aeruginosa on other bacterial species. Microbes Environ 2010; 25:1–7 [View Article] [PubMed]
    [Google Scholar]
  25. Murray EJ, Dubern J-F, Chan WC, Chhabra SR, Williams P. A Pseudomonas aeruginosa PQS quorum-sensing system inhibitor with anti-staphylococcal activity sensitizes polymicrobial biofilms to tobramycin. Cell Chem Biol 2022; 29:1187–1199 [View Article]
    [Google Scholar]
  26. Nazik H, Sass G, Williams P, Déziel E, Stevens DA. Molecular modifications of the pseudomonas quinolone signal in the intermicrobial competition with Aspergillus. J Fungi 2021; 7:343 [View Article]
    [Google Scholar]
  27. Reen FJ, McGlacken GP, O’Gara F. The expanding horizon of alkyl quinolone signalling and communication in polycellular interactomes. FEMS Microbiol Lett 2018; 365: [View Article]
    [Google Scholar]
  28. Reen FJ, Phelan JP, Gallagher L, Woods DF, Shanahan RM et al. Exploiting interkingdom interactions for development of small-molecule inhibitors of Candida albicans biofilm formation. Antimicrob Agents Chemother 2016; 60:5894–5905 [View Article]
    [Google Scholar]
  29. Reen FJ, Phelan JP, Woods DF, Shanahan R, Cano R et al. Harnessing bacterial signals for suppression of biofilm formation in the nosocomial fungal pathogen Aspergillus fumigatus. Front Microbiol 2016; 7: [View Article]
    [Google Scholar]
  30. Reen FJ, Shanahan R, Cano R, O’Gara F, McGlacken GP. A structure activity-relationship study of the bacterial signal molecule HHQ reveals swarming motility inhibition in Bacillus atrophaeus. Org Biomol Chem 2015; 13:5537–5541 [View Article]
    [Google Scholar]
  31. Bowler P, Murphy C, Wolcott R. Biofilm exacerbates antibiotic resistance: Is this a current oversight in antimicrobial stewardship?. Antimicrob Resist Infect Control 2020; 9:162 [View Article]
    [Google Scholar]
  32. Giaouris EE, Simoes MV. Pathogenic biofilm formation in the food industry and alternative control strategies. Handb Food Bioeng 2018; 15:309–377 [View Article]
    [Google Scholar]
  33. Donlan RM. Biofilm formation: a clinically relevant microbiological process. Clin Infect Dis 2001; 33:1387–1392 [View Article]
    [Google Scholar]
  34. Vestby LK, Grønseth T, Simm R, Nesse LL. Bacterial biofilm and its role in the pathogenesis of disease. Antibiotics 2020; 9:59 [View Article]
    [Google Scholar]
  35. Muhammad MH, Idris AL, Fan X, Guo YC, Yu YY et al. Beyond risk: bacterial biofilms and their regulating approaches. Front Microbiol 2020; 11: [View Article]
    [Google Scholar]
  36. Peters BM, Jabra-Rizk MA, O’May GA, Costerton JW, Shirtliff ME. Polymicrobial interactions: impact on pathogenesis and human disease. Clin Microbiol Rev 2012; 25:193–213 [View Article]
    [Google Scholar]
  37. Dar D, Dar N, Cai L, Newman DK. Spatial transcriptomics of planktonic and sessile bacterial populations at single-cell resolution. Science 2021; 373:eabi4882 [View Article] [PubMed]
    [Google Scholar]
  38. Gloag ES, Turnbull L, Huang A, Vallotton P, Wang H et al. Self-organization of bacterial biofilms is facilitated by extracellular DNA. Proc Natl Acad Sci 2013; 110:11541–11546 [View Article]
    [Google Scholar]
  39. Sharma D, Misba L, Khan AU. Antibiotics versus biofilm: an emerging battleground in microbial communities. Antimicrob Resist Infect Control 2019; 8:76 [View Article]
    [Google Scholar]
  40. Grainha T, Jorge P, Alves D, Lopes SP, Pereira MO. Unraveling Pseudomonas aeruginosa and Candida albicans communication in coinfection scenarios: insights through network analysis. Front Cell Infect Microbiol 2020; 10:550505 [View Article]
    [Google Scholar]
  41. Owens J. Target validation - determining druggabiity. Nat Rev Drug Discov 2007; 6:187 [View Article]
    [Google Scholar]
  42. Shanahan RM, Hickey A, Reen FJ, O’Gara F, McGlacken GP. Synthesis of benzofuroquinolines via phosphine-free direct arylation of 4-phenoxyquinolines in air. Eur J Org Chem 2018; 2018:6140–6149 [View Article]
    [Google Scholar]
  43. Flynn S, Reen FJ, O’Gara F. Exposure to bile leads to the emergence of adaptive signaling variants in the opportunistic pathogen Pseudomonas aeruginosa. Front Microbiol 2019; 10:2013 [View Article]
    [Google Scholar]
  44. Ibberson CB, Stacy A, Fleming D, Dees JL, Rumbaugh K et al. Co-infecting microorganisms dramatically alter pathogen gene essentiality during polymicrobial infection. Nat Microbiol 2017; 2:17079 [View Article]
    [Google Scholar]
  45. Schütz C, Empting M. Targeting the Pseudomonas quinolone signal quorum sensing system for the discovery of novel anti-infective pathoblockers. Beilstein J Org Chem 2018; 14:2627–2645 [View Article] [PubMed]
    [Google Scholar]
  46. Zaheer Z, Khan FAK, Sangshetti JN, Patil RH, Lohar KS. Novel amalgamation of phthalazine-quinolines as biofilm inhibitors: one-pot synthesis, biological evaluation and in silico ADME prediction with favorable metabolic fate. Bioorg Med Chem Lett 2016; 26:1696–1703 [View Article]
    [Google Scholar]
  47. Aleksić I, Šegan S, Andrić F, Zlatović M, Moric I et al. Long-chain 4-aminoquinolines as quorum sensing inhibitors in Serratia marcescens and Pseudomonas aeruginosa. ACS Chem Biol 2017; 12:1425–1434 [View Article]
    [Google Scholar]
  48. Espinosa-Valdés MP, Borbolla-Alvarez S, Delgado-Espinosa AE, Sánchez-Tejeda JF, Cerón-Nava A et al. Synthesis, In Silico, and In Vitro Evaluation of Long Chain Alkyl Amides from 2-Amino-4-Quinolone Derivatives as Biofilm Inhibitors. Mol 2019; 24:327 [View Article]
    [Google Scholar]
  49. Hodgkinson J, Bowden SD, Galloway W, Spring DR, Welch M. Structure-activity analysis of the Pseudomonas quinolone signal molecule. J Bacteriol 2010; 192:3833–3837 [View Article]
    [Google Scholar]
  50. Ilangovan A, Fletcher M, Rampioni G, Pustelny C, Rumbaugh K et al. Structural basis for native agonist and synthetic inhibitor recognition by the Pseudomonas aeruginosa quorum sensing regulator PqsR (MvfR). PLoS Pathog 2013; 9:e1003508 [View Article]
    [Google Scholar]
  51. Ramos AF, Woods DF, Shanahan R, Cano R, McGlacken GP et al. A structure-function analysis of interspecies antagonism by the 2-heptyl-4-alkyl-quinolone signal molecule from Pseudomonas aeruginosa. Microbiol 2020; 166:169–179 [View Article]
    [Google Scholar]
  52. Shanahan R, Reen FJ, Cano R, O’Gara F, McGlacken GP. The requirements at the C-3 position of alkylquinolones for signalling in Pseudomonas aeruginosa. Org Biomol Chem 2017; 15:306–310 [View Article]
    [Google Scholar]
  53. Sato H, Chuang VTG, Yamasaki K, Yamaotsu N, Watanabe H et al. Differential effects of methoxy group on the interaction of curcuminoids with two major ligand binding sites of human serum albumin. PLoS One 2014; 9:e87919 [View Article]
    [Google Scholar]
  54. Müller K, Faeh C, Diederich F. Fluorine in pharmaceuticals: looking beyond intuition. Science 2007; 317:1881–1886 [View Article] [PubMed]
    [Google Scholar]
  55. Abouelhassan Y, Garrison AT, Burch GM, Wong W, Norwood VM et al. Discovery of quinoline small molecules with potent dispersal activity against methicillin-resistant Staphylococcus aureus and Staphylococcus epidermidis biofilms using a scaffold hopping strategy. Bioorg Med Chem Lett 2014; 24:5076–5080 [View Article]
    [Google Scholar]
  56. Basak A, Abouelhassan Y, Kim YS, Norwood VM, Jin SG et al. Halogenated quinolines bearing polar functionality at the 2-position: Identification of new antibacterial agents with enhanced activity against Staphylococcus epidermidis. Eur J Med Chem 2018; 155:705–713 [View Article] [PubMed]
    [Google Scholar]
  57. Zhao M, Kamada T, Takeuchi A, Nishioka H, Kuroda T et al. Structure-activity relationship of indoloquinoline analogs anti-MRSA. Bioorg Med Chem Lett 2015; 25:5551–5554 [View Article] [PubMed]
    [Google Scholar]
  58. Khamkhenshorngphanuch T, Kulkraisri K, Janjamratsaeng A, Plabutong N, Thammahong A et al. Synthesis and antimicrobial activity of novel 4-hydroxy-2-quinolone analogs. Mol 2020; 25:13 [View Article]
    [Google Scholar]
  59. Kamal AAM, Petrera L, Eberhard J, Hartmann RW. Structure-functionality relationship and pharmacological profiles of Pseudomonas aeruginosa alkylquinolone quorum sensing modulators. Org Biomol Chem 2017; 15:4620–4630 [View Article]
    [Google Scholar]
  60. Ritzmann NH, Mährlein A, Ernst S, Hennecke U, Drees SL et al. Bromination of alkyl quinolones by Microbulbifer sp. HZ11, a marine Gammaproteobacterium, modulates their antibacterial activity. Environ Microbiol 2019; 21:2595–2609 [View Article]
    [Google Scholar]
  61. Bisht K, Baishya J, Wakeman CA. Pseudomonas aeruginosa polymicrobial interactions during lung infection. Curr Opin Microbiol 2020; 53:1–8 [View Article]
    [Google Scholar]
  62. Frydenlund Michelsen C, Hossein Khademi SM, Krogh Johansen H, Ingmer H, Dorrestein PC et al. Evolution of metabolic divergence in Pseudomonas aeruginosa during long-term infection facilitates a proto-cooperative interspecies interaction. ISME J 2016; 10:1323–1336 [View Article]
    [Google Scholar]
  63. Millette G, Langlois JP, Brouillette E, Frost EH, Cantin AM et al. Despite antagonism in vitro, Pseudomonas aeruginosa enhances Staphylococcus aureus colonization in a Murine lung infection model. Front Microbiol 2019; 10:2880 [View Article]
    [Google Scholar]
  64. Baker YR, Hodgkinson JT, Florea BI, Alza E, Galloway WRJD et al. Identification of new quorum sensing autoinducer binding partners in Pseudomonas aeruginosa using photoaffinity probes. Chem Sci 2017; 8:7403–7411 [View Article]
    [Google Scholar]
  65. Hodgkinson JT, Gross J, Baker YR, Spring DR, Welch M. A new pseudomonas quinolone signal (PQS) binding partner: mexg. Chem Sci 2016; 7:2553–2562 [View Article]
    [Google Scholar]
  66. O’Toole GA, Crabbé A, Kümmerli R, LiPuma JJ, Bomberger JM et al. Model systems to study the chronic, polymicrobial infections in cystic fibrosis: current approaches and exploring future directions. mBio 2021; 12:e0176321 [View Article]
    [Google Scholar]
  67. Yan J, Bassler BL. Surviving as a community: antibiotic tolerance and persistence in bacterial biofilms. Cell Host Microbe 2019; 26:15–21 [View Article]
    [Google Scholar]
  68. Winstanley C, O’Brien S, Brockhurst MA. Pseudomonas aeruginosa evolutionary adaptation and diversification in cystic fibrosis chronic lung infections. Trends Microbiol 2016; 24:327–337 [View Article]
    [Google Scholar]
  69. Ramsey DM, Wozniak DJ. Understanding the control of Pseudomonas aeruginosa alginate synthesis and the prospects for management of chronic infections in cystic fibrosis. Mol Microbiol 2005; 56:309–322 [View Article]
    [Google Scholar]
  70. Liberati NT, Urbach JM, Miyata S, Lee DG, Drenkard E et al. An ordered, nonredundant library of Pseudomonas aeruginosa strain PA14 transposon insertion mutants. Proc Natl Acad Sci 2006; 103:2833–2838 [View Article]
    [Google Scholar]
  71. Hidalgo AA, Arias ÁJ, Fuentes JA, García P, Mora GC et al. Xylose improves antibiotic activity of chloramphenicol and tetracycline against K. pneumoniae and A. baumannii in A Murine model of skin infection. Can J Infect Dis Med Microbiol 2018; 2018:3467219 [View Article]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/micro/10.1099/mic.0.001303
Loading
/content/journal/micro/10.1099/mic.0.001303
Loading

Data & Media loading...

Supplements

Supplementary material 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error