1887

Abstract

Mycobacterial peptidoglycan (PG) is an unsolved puzzle due to its complex structure and involvement of multiple enzymes in the process of its remodelling. -Carboxypeptidases are low molecular mass penicillin-binding proteins (LMM-PBPs) that catalyzes the cleavage of terminal -Ala of muramyl pentapeptide branches and thereby helps in the PG remodelling process. Here, we have assigned the function of a putative LMM-PBP, MSMEG_2432 of , by showing that it exhibits both -CPase and β-lactamase activities. Like conventional -CPase (PBP5 from ), upon ectopic complementation in a deformed seven PBP deletion mutant of , MSMEG_2432 has manifested its ability to restore ~75 % of the cell population to their normal rod shape. Further, -CPase assay has confirmed its ability to release terminal -Ala from the synthetic tripeptide and the peptidoglycan mimetic pentapeptide substrates ending with -Ala--Ala. Also, elevated resistance against penicillins and cephalosporins upon ectopic expression of MSMEG_2432 suggests the presence of β-lactamase activity, which is further confirmed through nitrocefin hydrolysis assay. Moreover, it is found apparent that D169A substitution in MSMEG_2432 influences both of its and -CPase and β-lactamase activities. Thus, we infer that MSMEG_2432 is a dual function enzyme that possesses both -CPase and β-lactamase activities.

Funding
This study was supported by the:
  • Department of Biotechnology, Government of India (Award BT/PR24255/NER/95/716/2017)
    • Principle Award Recipient: Anindya S Ghosh
Loading

Article metrics loading...

/content/journal/micro/10.1099/mic.0.000902
2020-04-17
2024-04-18
Loading full text...

Full text loading...

/deliver/fulltext/micro/166/6/546.html?itemId=/content/journal/micro/10.1099/mic.0.000902&mimeType=html&fmt=ahah

References

  1. Schleifer KH, Kandler O. Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 1972; 36:407477 [View Article][PubMed]
    [Google Scholar]
  2. Lovering AL, Safadi SS, Strynadka NCJ. Structural perspective of peptidoglycan biosynthesis and assembly. Annu Rev Biochem 2012; 81:451–478 [View Article][PubMed]
    [Google Scholar]
  3. Typas A, Banzhaf M, Gross CA, Vollmer W. From the regulation of peptidoglycan synthesis to bacterial growth and morphology. Nat Rev Microbiol 2011; 10:123–136 [View Article][PubMed]
    [Google Scholar]
  4. Sauvage E, Kerff F, Terrak M, Ayala JA, Charlier P. The penicillin-binding proteins: structure and role in peptidoglycan biosynthesis. FEMS Microbiol Rev 2008; 32:234–258 [View Article][PubMed]
    [Google Scholar]
  5. Ghuysen JM, Charlier P, Coyette J, Duez C, Fonzé E et al. Penicillin and beyond: evolution, protein fold, multimodular polypeptides, and multiprotein complexes. Microb Drug Resist 1996; 2:163–175 [View Article][PubMed]
    [Google Scholar]
  6. Macheboeuf P, Contreras-Martel C, Job V, Dideberg O, Dessen A. Penicillin binding proteins: key players in bacterial cell cycle and drug resistance processes. FEMS Microbiol Rev 2006; 30:673–691 [View Article][PubMed]
    [Google Scholar]
  7. Wong CS, Palmer GS, Cynamon MH. In-Vitro susceptibility of Mycobacterium tuberculosis, Mycobacterium bovis and Mycobacterium kansasii to amoxycillin and ticarcillin in combination with clavulanic acid. J Antimicrob Chemother 1988; 22:863–866 [View Article][PubMed]
    [Google Scholar]
  8. Utrup LJ, Moore TD, Actor P, Poupard JA. Susceptibilities of nontuberculosis mycobacterial species to amoxicillin-clavulanic acid alone and in combination with antimycobacterial agents. Antimicrob Agents Chemother 1995; 39:1454–1457 [View Article][PubMed]
    [Google Scholar]
  9. Hett EC, Rubin EJ. Bacterial growth and cell division: a mycobacterial perspective. Microbiol Mol Biol Rev 2008; 72:126–156 [View Article][PubMed]
    [Google Scholar]
  10. Bansal A, Kar D, Murugan RA, Mallick S, Dutta M et al. A putative low-molecular-mass penicillin-binding protein (PBP) of Mycobacterium smegmatis exhibits prominent physiological characteristics of DD-carboxypeptidase and beta-lactamase. Microbiology 2015; 161:1081–1091 [View Article][PubMed]
    [Google Scholar]
  11. Lavollay M, Arthur M, Fourgeaud M, Dubost L, Marie A et al. The peptidoglycan of stationary-phase Mycobacterium tuberculosis predominantly contains cross-links generated by LD-transpeptidation. J Bacteriol 2008; 190:4360–4366 [View Article][PubMed]
    [Google Scholar]
  12. Kumar P, Arora K, Lloyd JR, Lee IY, Nair V et al. Meropenem inhibits DD-carboxypeptidase activity in Mycobacterium tuberculosis . Mol Microbiol 2012; 86:367–381 [View Article][PubMed]
    [Google Scholar]
  13. Lavollay M, Fourgeaud M, Herrmann J-L, Dubost L, Marie A et al. The peptidoglycan of Mycobacterium abscessus is predominantly cross-linked by LD-transpeptidases. J Bacteriol 2011; 193:778–782 [View Article][PubMed]
    [Google Scholar]
  14. Sanders AN, Wright LF, Pavelka MS. Genetic characterization of mycobacterial LD-transpeptidases. Microbiology 2014; 160:1795–1806 [View Article][PubMed]
    [Google Scholar]
  15. Pandey SD, Pal S, Kumar N G, Bansal A, Mallick S et al. Two DD-carboxypeptidases from Mycobacterium smegmatis affect cell surface properties through regulation of peptidoglycan cross-linking and glycopeptidolipids. J Bacteriol 2018; 200:e00760–00717 [View Article][PubMed]
    [Google Scholar]
  16. Nelson DE, Young KD. Contributions of PBP 5 and DD-carboxypeptidase penicillin binding proteins to maintenance of cell shape in Escherichia coli . J Bacteriol 2001; 183:3055–3064 [View Article][PubMed]
    [Google Scholar]
  17. Ghosh AS, Chowdhury C, Nelson DE. Physiological functions of D-alanine carboxypeptidases in Escherichia coli . Trends Microbiol 2008; 16:309–317 [View Article][PubMed]
    [Google Scholar]
  18. Ghuysen JM. Molecular structures of penicillin-binding proteins and beta-lactamases. Trends Microbiol 1994; 2:372–380 [View Article][PubMed]
    [Google Scholar]
  19. Dutta M, Kar D, Bansal A, Chakraborty S, Ghosh AS. A single amino acid substitution in the Ω-like loop of E. coli PBP5 disrupts its ability to maintain cell shape and intrinsic beta-lactam resistance. Microbiology 2015; 161:895–902 [View Article][PubMed]
    [Google Scholar]
  20. Ealand CS, Asmal R, Mashigo L, Campbell L, Kana BD. Characterization of putative DD-carboxypeptidase-encoding genes in Mycobacterium smegmatis. Sci Rep 2019; 9:5194 [View Article][PubMed]
    [Google Scholar]
  21. Guzman LM, Belin D, Carson MJ, Beckwith J. Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter. J Bacteriol 1995; 177:4121–4130 [View Article][PubMed]
    [Google Scholar]
  22. Wayne P. Clinical and laboratory standards institute. Performance Standards for Antimicrobial Susceptibility Testing 17 2007
    [Google Scholar]
  23. Chowdhury C, Nayak TR, Young KD, Ghosh AS. A weak DD-carboxypeptidase activity explains the inability of PBP 6 to substitute for PBP 5 in maintaining normal cell shape in Escherichia coli . FEMS Microbiol Lett 2010; 303:76–83 [View Article][PubMed]
    [Google Scholar]
  24. Zhao G, Meier TI, Kahl SD, Gee KR, Blaszczak LC. BOCILLIN fl, a sensitive and commercially available reagent for detection of penicillin-binding proteins. Antimicrob Agents Chemother 1999; 43:1124–1128 [View Article][PubMed]
    [Google Scholar]
  25. Chowdhury C, Kar D, Dutta M, Kumar A, Ghosh AS. Moderate deacylation efficiency of DacD explains its ability to partially restore beta-lactam resistance in Escherichia coli PBP5 mutant. FEMS Microbiol Lett 2012; 337:73–80 [View Article][PubMed]
    [Google Scholar]
  26. Carapito R, Chesnel L, Vernet T, Zapun A. Pneumococcal β-lactam resistance due to a conformational change in penicillin-binding protein 2x. J Biol Chem 2006; 281:1771–1777 [View Article][PubMed]
    [Google Scholar]
  27. Jamin M, Damblon C, Millier S, Hakenbeck R, Frère JM. Penicillin-binding protein 2x of Streptococcus pneumoniae: enzymic activities and interactions with β-lactams. Biochem J 1993; 292 (Pt 3:735–741 [View Article][PubMed]
    [Google Scholar]
  28. Fontana R, Grossato A, Rossi L, Cheng YR, Satta G. Transition from resistance to hypersusceptibility to beta-lactam antibiotics associated with loss of a low-affinity penicillin-binding protein in a Streptococcus faecium mutant highly resistant to penicillin. Antimicrob Agents Chemother 1985; 28:678–683 [View Article][PubMed]
    [Google Scholar]
  29. Kandasamy S, Narayanan S. Phenotypic characterization of a novel double knockout PknI/DacB2 from Mycobacterium tuberculosis. Microbiol Res 2015; 170:255–262 [View Article][PubMed]
    [Google Scholar]
  30. Sievers F, Wilm A, Dineen D, Gibson TJ, Karplus K et al. Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal omega. Mol Syst Biol 2011; 7:539 [View Article][PubMed]
    [Google Scholar]
  31. Sali A, Blundell T. Comparative protein modelling by satisfaction of spatial restraints. Protein structure by distance analysis 1994; 64:C86
    [Google Scholar]
  32. Nelson DE, Young KD. Penicillin binding protein 5 affects cell diameter, contour, and morphology of Escherichia coli . J Bacteriol 2000; 182:1714–1721 [View Article][PubMed]
    [Google Scholar]
  33. Höltje JV. Growth of the stress-bearing and shape-maintaining murein sacculus of Escherichia coli . Microbiol Mol Biol Rev 1998; 62:181–203 [View Article][PubMed]
    [Google Scholar]
  34. Nicholas RA, Krings S, Tomberg J, Nicola G, Davies C. Crystal structure of wild-type penicillin-binding protein 5 from Escherichia coli: implications for deacylation of the acyl-enzyme complex. J Biol Chem 2003; 278:52826–52833 [View Article][PubMed]
    [Google Scholar]
  35. Sarkar SK, Dutta M, Chowdhury C, Kumar A, Ghosh AS. PBP5, PBP6 and DacD play different roles in intrinsic β-lactam resistance of Escherichia coli . Microbiology 2011; 157:2702–2707 [View Article][PubMed]
    [Google Scholar]
  36. Sarkar SK, Dutta M, Kumar A, Mallik D, Ghosh AS. Sub-inhibitory cefsulodin sensitization of E. coli to β-lactams is mediated by PBP1B inhibition. PLoS One 2012; 7:e48598 [View Article][PubMed]
    [Google Scholar]
  37. Chowdhury C, Ghosh AS. Differences in active-site microarchitecture explain the dissimilar behaviors of PBP5 and 6 in Escherichia coli . J Mol Graph Model 2011; 29:650–656 [View Article][PubMed]
    [Google Scholar]
  38. Kar D, Pandey SD, Mallick S, Dutta M, Ghosh AS. Substitution of alanine at position 184 with glutamic acid in Escherichia coli PBP5 Ω-Like loop introduces a moderate cephalosporinase activity. Protein J 2018; 37:122–131 [View Article][PubMed]
    [Google Scholar]
  39. Malhotra KT, Nicholas RA. Substitution of lysine 213 with arginine in penicillin-binding protein 5 of Escherichia coli abolishes D-alanine carboxypeptidase activity without affecting penicillin binding. J Biol Chem 1992; 267:11386–11391[PubMed]
    [Google Scholar]
  40. Adachi H, Ohta T, Matsuzawa H. Site-Directed mutants, at position 166, of RTEM-1 beta-lactamase that form a stable acyl-enzyme intermediate with penicillin. J Biol Chem 1991; 266:3186–3191[PubMed]
    [Google Scholar]
  41. Sandlin RC, Goldberg MB, Maurelli AT. Effect of O side-chain length and composition on the virulence of Shigella flexneri 2A. Mol Microbiol 1996; 22:63–73 [View Article][PubMed]
    [Google Scholar]
  42. Ghosh AS, Young KD. Sequences near the active site in chimeric penicillin binding proteins 5 and 6 affect uniform morphology of Escherichia coli . J Bacteriol 2003; 185:2178–2186 [View Article][PubMed]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/micro/10.1099/mic.0.000902
Loading
/content/journal/micro/10.1099/mic.0.000902
Loading

Data & Media loading...

Supplements

Supplementary material 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error