1887

Abstract

The two-component regulatory system CiaRH of affects a large variety of physiological processes including ß-lactam resistance, competence development, maintenance of cell integrity, bacteriocin production, but also host colonization and virulence. The response regulator CiaR is active under a wide variety of conditions and the cognate CiaH kinase is not always needed to maintain CiaR activity. Using tetracycline-controlled expression of and variants, acetyl phosphate was identified as the alternative source of CiaR phosphorylation in the absence of CiaH. Concomitant inactivation of and the acetate kinase gene led to very high levels of CiaR-mediated promoter activation. Strong transcriptional activation was accompanied by a high phosphorylation status of CiaR as determined by Phos-tag gel electrophoresis of cell extracts. Furthermore, AckA acted negatively upon acetyl phosphate-dependent phosphorylation of CiaR. Experiments using the two-hybrid system based on adenylate cyclase reconstitution indicated binding of AckA to CiaR and therefore direct regulation. Subsequent CiaR phosphorylation experiments confirmed observations. Purified AckA was able to inhibit acetyl phosphate-dependent phosphorylation. Inhibition required the presence of ADP. AckA-mediated regulation of CiaR phosphorylation is the first example for a regulatory connection of acetate kinase to a response regulator besides controlling acetyl phosphate levels. It will be interesting to see if this novel regulation applies to other response regulators in or even in other organisms.

Funding
This study was supported by the:
  • Deutsche Forschungsgemeinschaft (Award BR947-8-1)
    • Principle Award Recipient: Reinhold Brückner
Loading

Article metrics loading...

/content/journal/micro/10.1099/mic.0.000894
2020-02-19
2024-04-19
Loading full text...

Full text loading...

/deliver/fulltext/micro/166/4/411.html?itemId=/content/journal/micro/10.1099/mic.0.000894&mimeType=html&fmt=ahah

References

  1. Guenzi E, Gasc AM, Sicard MA, Hakenbeck R. A two-component signal-transducing system is involved in competence and penicillin susceptibility in laboratory mutants of Streptococcus pneumoniae . Mol Microbiol 1994; 12:505–515 [View Article][PubMed]
    [Google Scholar]
  2. Gao R, Stock AM. Molecular strategies for phosphorylation-mediated regulation of response regulator activity. Curr Opin Microbiol 2010; 13:160–167 [View Article][PubMed]
    [Google Scholar]
  3. Gao R, Bouillet S, Stock AM. Structural basis of response regulator function. Annu Rev Microbiol 2019; 73:175–197 [View Article][PubMed]
    [Google Scholar]
  4. Nguyen M-P, Yoon J-M, Cho M-H, Lee S-W. Prokaryotic 2-component systems and the OmpR/PhoB superfamily. Can J Microbiol 2015; 61:799–810 [View Article][PubMed]
    [Google Scholar]
  5. Zschiedrich CP, Keidel V, Szurmant H. Molecular mechanisms of two-component signal transduction. J Mol Biol 2016; 428:3752–3775 [View Article][PubMed]
    [Google Scholar]
  6. Müller M, Marx P, Hakenbeck R, Brückner R. Effect of new alleles of the histidine kinase gene ciaH on the activity of the response regulator CiaR in Streptococcus pneumoniae R6. Microbiology 2011; 157:3104–3112 [View Article][PubMed]
    [Google Scholar]
  7. Dagkessamanskaia A, Moscoso M, Hénard V, Guiral S, Overweg K et al. Interconnection of competence, stress and CiaR regulons in Streptococcus pneumoniae: competence triggers stationary phase autolysis of ciaR mutant cells. Mol Microbiol 2004; 51:1071–1086 [View Article][PubMed]
    [Google Scholar]
  8. Mascher T, Heintz M, Zähner D, Merai M, Hakenbeck R. The CiaRH system of Streptococcus pneumoniae prevents lysis during stress induced by treatment with cell wall inhibitors and by mutations in PBP2x involved in beta-lactam resistance. J Bacteriol 2006; 188:1959–1968 [View Article][PubMed]
    [Google Scholar]
  9. Kochan TJ, Dawid S. The HtrA protease of Streptococcus pneumoniae controls density-dependent stimulation of the bacteriocin blp locus via disruption of pheromone secretion. J Bacteriol 2013; 195:1561–1572 [View Article][PubMed]
    [Google Scholar]
  10. Blanchette-Cain K, Hinojosa CA, Akula Suresh Babu R, Lizcano A, Gonzalez-Juarbe N et al. Streptococcus pneumoniae biofilm formation is strain dependent, multifactorial, and associated with reduced invasiveness and immunoreactivity during colonization. mBio 2013; 4:e00745–00713 [View Article][PubMed]
    [Google Scholar]
  11. Ibrahim YM, Kerr AR, McCluskey J, Mitchell TJ. Control of virulence by the two-component system CiaR/H is mediated via HtrA, a major virulence factor of Streptococcus pneumoniae . J Bacteriol 2004; 186:5258–5266 [View Article][PubMed]
    [Google Scholar]
  12. Cassone M, Gagne AL, Spruce LA, Seeholzer SH, Sebert ME. The HtrA protease from Streptococcus pneumoniae digests both denatured proteins and the competence-stimulating peptide. J Biol Chem 2012; 287:38449–38459 [View Article][PubMed]
    [Google Scholar]
  13. Laux A, Sexauer A, Sivaselvarajah D, Kaysen A, Brückner R. Control of competence by related non-coding csRNAs in Streptococcus pneumoniae R6. Front Genet 2015; 6:246 [View Article][PubMed]
    [Google Scholar]
  14. Schnorpfeil A, Kranz M, Kovács M, Kirsch C, Gartmann J et al. Target evaluation of the non-coding csRNAs reveals a link of the two-component regulatory system CiaRH to competence control in Streptococcus pneumoniae R6. Mol Microbiol 2013; 89:334–349 [View Article][PubMed]
    [Google Scholar]
  15. Haas W, Kaushal D, Sublett J, Obert C, Tuomanen EI. Vancomycin stress response in a sensitive and a tolerant strain of Streptococcus pneumoniae . J Bacteriol 2005; 187:8205–8210 [View Article][PubMed]
    [Google Scholar]
  16. Rogers PD, Liu TT, Barker KS, Hilliard GM, English BK et al. Gene expression profiling of the response of Streptococcus pneumoniae to penicillin. J Antimicrob Chemother 2007; 59:616–626 [View Article][PubMed]
    [Google Scholar]
  17. Schweizer I, Blättner S, Maurer P, Peters K, Vollmer D et al. New aspects of the interplay between penicillin binding proteins, murM, and the two-component system CiaRH of Penicillin-Resistant Streptococcus pneumoniae serotype 19A isolates from hungary. Antimicrob Agents Chemother 2017; 61:00414–00417 [View Article][PubMed]
    [Google Scholar]
  18. Peterson SN, Sung CK, Cline R, Desai BV, Snesrud EC et al. Identification of competence pheromone responsive genes in Streptococcus pneumoniae by use of DNA microarrays. Mol Microbiol 2004; 51:1051–1070 [View Article][PubMed]
    [Google Scholar]
  19. Slager J, Aprianto R, Veening J-W. Refining the pneumococcal competence regulon by RNA sequencing. J Bacteriol 2019; 201:e00780–00718 [View Article][PubMed]
    [Google Scholar]
  20. Halfmann A, Schnorpfeil A, Müller M, Marx P, Günzler U et al. Activity of the two-component regulatory system CiaRH in Streptococcus pneumoniae R6. J Mol Microbiol Biotechnol 2011; 20:96–104 [View Article][PubMed]
    [Google Scholar]
  21. Marx P, Meiers M, Brückner R. Activity of the response regulator CiaR in mutants of Streptococcus pneumoniae R6 altered in acetyl phosphate production. Front Microbiol 2014; 5:772 [View Article][PubMed]
    [Google Scholar]
  22. Pericone CD, Park S, Imlay JA, Weiser JN. Factors contributing to hydrogen peroxide resistance in Streptococcus pneumoniae include pyruvate oxidase (SpxB) and avoidance of the toxic effects of the Fenton reaction. J Bacteriol 2003; 185:6815–6825 [View Article][PubMed]
    [Google Scholar]
  23. Ramos-Montañez S, Kazmierczak KM, Hentchel KL, Winkler ME. Instability of ackA (acetate kinase) mutations and their effects on acetyl phosphate and ATP amounts in Streptococcus pneumoniae D39. J Bacteriol 2010; 192:6390–6400 [View Article][PubMed]
    [Google Scholar]
  24. Spellerberg B, Cundell DR, Sandros J, Pearce BJ, Idanpaan-Heikkila I et al. Pyruvate oxidase, as a determinant of virulence in Streptococcus pneumoniae . Mol Microbiol 1996; 19:803–813 [View Article][PubMed]
    [Google Scholar]
  25. Mitrophanov AY, Groisman EA. Signal integration in bacterial two-component regulatory systems. Genes Dev 2008; 22:2601–2611 [View Article]
    [Google Scholar]
  26. Kalantari A, Derouiche A, Shi L, Mijakovic I. Serine/threonine/tyrosine phosphorylation regulates DNA binding of bacterial transcriptional regulators. Microbiology 2015; 161:1720–1729 [View Article][PubMed]
    [Google Scholar]
  27. Barak R, Eisenbach M. Co-regulation of acetylation and phosphorylation of CheY, a response regulator in chemotaxis of Escherichia coli . J Mol Biol 2004; 342:375–381 [View Article][PubMed]
    [Google Scholar]
  28. Hu LI, Chi BK, Kuhn ML, Filippova EV, Walker-Peddakotla AJ et al. Acetylation of the response regulator RcsB controls transcription from a small RNA promoter. J Bacteriol 2013; 195:4174–4186 [View Article][PubMed]
    [Google Scholar]
  29. Weinert BT, Iesmantavicius V, Wagner SA, Schölz C, Gummesson B et al. Acetyl-phosphate is a critical determinant of lysine acetylation in E. coli . Mol Cell 2013; 51:265–272 [View Article][PubMed]
    [Google Scholar]
  30. Wolfe AJ. Bacterial protein acetylation: new discoveries unanswered questions. Curr Genet 2016; 62:335–341 [View Article][PubMed]
    [Google Scholar]
  31. Ottolenghi E, Hotchkiss RD. Release of genetic transforming agent from pneumococcal cultures during growth and disintegration. J Exp Med 1962; 116:491–519 [View Article][PubMed]
    [Google Scholar]
  32. Halfmann A, Hakenbeck R, Brückner R. A new integrative reporter plasmid for Streptococcus pneumoniae . FEMS Microbiol Lett 2007; 268:217–224 [View Article][PubMed]
    [Google Scholar]
  33. Meiers M, Laux A, Eichinger D, Sexauer A, Marx P et al. A tetracycline-inducible integrative expression system for Streptococcus pneumoniae . FEMS Microbiol Lett 2017; 364:fnx044 [View Article][PubMed]
    [Google Scholar]
  34. Lacks S, Hotchkiss RD. A study of the genetic material determining an enzyme in Pneumococcus. Biochim Biophys Acta 1960; 39:508–518 [View Article][PubMed]
    [Google Scholar]
  35. Alloing G, Granadel C, Morrison DA, Claverys JP. Competence pheromone, oligopeptide permease, and induction of competence in Streptococcus pneumoniae . Mol Microbiol 1996; 21:471–478 [View Article][PubMed]
    [Google Scholar]
  36. Halfmann A, Kovács M, Hakenbeck R, Brückner R. Identification of the genes directly controlled by the response regulator CiaR in Streptococcus pneumoniae: five out of 15 promoters drive expression of small non-coding RNAs. Mol Microbiol 2007; 66:110–126 [View Article][PubMed]
    [Google Scholar]
  37. Aceti DJ, Ferry JG. Purification and characterization of acetate kinase from acetate-grown Methanosarcina thermophila. Evidence for regulation of synthesis. J Biol Chem 1988; 263:15444–15448[PubMed]
    [Google Scholar]
  38. Battesti A, Bouveret E. The bacterial two-hybrid system based on adenylate cyclase reconstitution in Escherichia coli . Methods 2012; 58:325–334 [View Article][PubMed]
    [Google Scholar]
  39. Karimova G, Pidoux J, Ullmann A, Ladant D. A bacterial two-hybrid system based on a reconstituted signal transduction pathway. Proc Natl Acad Sci U S A 1998; 95:5752–5756 [View Article][PubMed]
    [Google Scholar]
  40. Claessen D, Emmins R, Hamoen LW, Daniel RA, Errington J et al. Control of the cell elongation-division cycle by shuttling of PBP1 protein in Bacillus subtilis . Mol Microbiol 2008; 68:1029–1046 [View Article][PubMed]
    [Google Scholar]
  41. Zundel CJ, Capener DC, McCleary WR. Analysis of the conserved acidic residues in the regulatory domain of PhoB. FEBS Lett 1998; 441:242–246 [View Article][PubMed]
    [Google Scholar]
  42. Lukat GS, Lee BH, Mottonen JM, Stock AM, Stock JB. Roles of the highly conserved aspartate and lysine residues in the response regulator of bacterial chemotaxis. J Biol Chem 1991; 266:8348–8354[PubMed]
    [Google Scholar]
  43. Lan CY, Igo MM. Differential expression of the OmpF and OmpC porin proteins in Escherichia coli K-12 depends upon the level of active OmpR. J Bacteriol 1998; 180:171–174 [View Article][PubMed]
    [Google Scholar]
  44. Klose KE, Weiss DS, Kustu S. Glutamate at the site of phosphorylation of nitrogen-regulatory protein NtrC mimics aspartyl-phosphate and activates the protein. J Mol Biol 1993; 232:67–78 [View Article][PubMed]
    [Google Scholar]
  45. Martin B, Soulet A-L, Mirouze N, Prudhomme M, Mortier-Barrière I et al. ComE/ComE~P interplay dictates activation or extinction status of pneumococcal X-state (competence). Mol Microbiol 2013; 87:394–411 [View Article][PubMed]
    [Google Scholar]
  46. Dissmeyer N, Schnittger A. Use of phospho-site substitutions to analyze the biological relevance of phosphorylation events in regulatory networks. Methods Mol Biol 2011; 779:93–138 [View Article][PubMed]
    [Google Scholar]
  47. Lukat GS, Stock AM, Stock JB. Divalent metal ion binding to the CheY protein and its significance to phosphotransfer in bacterial chemotaxis. Biochemistry 1990; 29:5436–5442 [View Article][PubMed]
    [Google Scholar]
  48. Ulijasz AT, Falk SP, Weisblum B. Phosphorylation of the RitR DNA-binding domain by a Ser-Thr phosphokinase: implications for global gene regulation in the streptococci. Mol Microbiol 2009; 71:382–390 [View Article][PubMed]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/micro/10.1099/mic.0.000894
Loading
/content/journal/micro/10.1099/mic.0.000894
Loading

Data & Media loading...

Supplements

Supplementary material 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error