1887

Abstract

The saprophytic actinobacterium A3(2) requires oxygen for filamentous growth. Surprisingly, the bacterium also synthesizes three active respiratory nitrate reductases (Nar), which are believed to contribute to survival, or general fitness, of the bacterium in soil when oxygen becomes limiting. In this study, we analysed Nar3 and showed that activity of the enzyme is restricted to stationary-phase mycelium of . Phosphate limitation was shown to be necessary for induction of enzyme synthesis. Nar3 synthesis was inhibited by inclusion of 20 mM phosphate in a defined ‘switch assay’ in which highly dispersed mycelium from exponentially growing cultures was shifted to neutral MOPS-glucose buffer to induce Nar3 synthesis and activity. Quantitative assessment of transcripts revealed a 30-fold induction of gene expression in stationary-phase mycelium. Transcript levels in stationary-phase mycelium incubated with phosphate were reduced by a little more than twofold, suggesting that the negative influence of phosphate on Nar3 synthesis was mainly at the post-transcriptional level. Furthermore, it was demonstrated that oxygen limitation was necessary to induce high levels of Nar3 activity. However, an abrupt shift from aerobic to anaerobic conditions prevented appearance of Nar3 activity. This suggests that the bacterium regulates Nar3 synthesis in response to the energy status of the mycelium. Nitrate had little impact on regulation of the Nar3 level. Together, these data identify Nar3 as a stationary-phase nitrate reductase in and demonstrate that enzyme synthesis is induced in response to both phosphate limitation and hypoxia.

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2016-09-01
2024-04-19
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References

  1. Azoulay E., Puig J., Pichinoty F. 1967; Alteration of respiratory particles by mutation in Escherichia coli K 12. Biochem Biophys Res Commun 27:270–274 [View Article][PubMed]
    [Google Scholar]
  2. Bentley S. D., Chater K. F., Cerdeño-Tárraga A. M., Challis G. L., Thomson N. R., James K. D., Harris D. E., Quail M. A., Kieser H. et al. 2002; Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2). Nature 417:141–147 [View Article][PubMed]
    [Google Scholar]
  3. Bott M., Niebisch A. 2003; The respiratory chain of Corynebacterium glutamicum . J Biotechnol 104:129–153 [View Article][PubMed]
    [Google Scholar]
  4. Cook G. M., Berney M., Gebhard S., Heinemann M., Cox R. A., Danilchanka O., Niederweis M. 2009; Physiology of mycobacteria. Adv Microbial Physiol 55:81–319 [CrossRef]
    [Google Scholar]
  5. Elliot M. A., Flärdh K. 2012; Streptomycete spores. In Encyclopedia of Life Sciences (ELS) , pp. 1–9 Chichester: John Wiley & Sons;
    [Google Scholar]
  6. Fischer M., Alderson J., van Keulen G., White J., Sawers R. G. 2010; The obligate aerobe Streptomyces coelicolor A3(2) synthesizes three active respiratory nitrate reductases. Microbiology 156:3166–3179 [View Article][PubMed]
    [Google Scholar]
  7. Fischer M., Sawers R. G. 2013; A universally applicable and rapid method for measuring the growth of Streptomyces and other filamentous microorganisms by methylene blue adsorption-desorption. Appl Environ Microbiol 79:4499–4502 [View Article][PubMed]
    [Google Scholar]
  8. Fischer M., Falke D., Sawers R. G. 2013; A respiratory nitrate reductase active exclusively in resting spores of the obligate aerobe Streptomyces coelicolor A3(2). Mol Microbiol 89:1259–1273 [View Article][PubMed]
    [Google Scholar]
  9. Fischer M., Falke D., Pawlik T., Sawers R. G. 2014; Oxygen-dependent control of respiratory nitrate reduction in mycelium of Streptomyces coelicolor A3(2). J Bacteriol 196:4152–4162 [View Article][PubMed]
    [Google Scholar]
  10. Hodgson D. A. 2000; Primary metabolism and its control in streptomycetes: a most unusual group of bacteria. Adv Microbial Physiol 42:47–238 [CrossRef]
    [Google Scholar]
  11. Hoffmann T., Frankenberg N., Marino M., Jahn D. 1998; Ammonification in Bacillus subtilis utilizing dissimilatory nitrite reductase is dependent on resDE . J Bacteriol 180:186–189[PubMed]
    [Google Scholar]
  12. Hopwood D. A. 2006; Soil to genomics: the Streptomyces chromosome. Annu Rev Genet 40:1–23 [View Article][PubMed]
    [Google Scholar]
  13. Jones R. W., Garland P. B. 1977; Sites and specificity of the reaction of bipyridylium compounds with anaerobic respiratory enzymes of Escherichia coli. Effects of permeability barriers imposed by the cytoplasmic membrane. Biochem J 164:199–211 [View Article][PubMed]
    [Google Scholar]
  14. Kieser T., Bibb M. J., Buttner M. J., Chater K. F., Hopwood D. A. 2000 Practical Streptomyces Genetics Norwich, UK: John Innes Foundation;
    [Google Scholar]
  15. Laemmli U. K. 1970; Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680–685 [View Article][PubMed]
    [Google Scholar]
  16. Lowry O., Rosebrough N., Farr A., Randall R. 1951; Protein measurement with the folin phenol reagent. J Biol Chem 193:265–275[PubMed]
    [Google Scholar]
  17. Nieselt K., Battke F., Herbig A., Bruheim P., Wentzel A., Jakobsen O. M., Sletta H., Alam M. T., Merlo M. E. et al. 2010; The dynamic architecture of the metabolic switch in Streptomyces coelicolor . BMC Genomics 11:10 [View Article][PubMed]
    [Google Scholar]
  18. Nishimura T., Vertès A. A., Shinoda Y., Inui M., Yukawa H. 2007; Anaerobic growth of Corynebacterium glutamicum using nitrate as a terminal electron acceptor. Appl Microbiol Biotechnol 75:889–897 [View Article][PubMed]
    [Google Scholar]
  19. Rodríguez-García A., Sola-Landa A., Apel K., Santos-Beneit F., Martín J. F. 2009; Phosphate control over nitrogen metabolism in Streptomyces coelicolor: direct and indirect negative control of glnR, glnA, glnII and amtB expression by the response regulator PhoP. Nucleic Acids Res 37:3230–3242 [View Article][PubMed]
    [Google Scholar]
  20. Sawers R. G., Falke D., Fischer M. 2016; Oxygen and nitrate respiration in Stretopmyces coelicolor A3(2). Adv Microb Physiol 68:1–40 [CrossRef]
    [Google Scholar]
  21. Schuhmacher T., Löffler M., Hurler T., Takors R. 2014; Phosphate limited fed-batch processes: impact on carbon usage and energy metabolism in Escherichia coli . J Biotechnol 190:96–104 [View Article][PubMed]
    [Google Scholar]
  22. Slater H., Crow M., Everson L., Salmond G. P. 2003; Phosphate availability regulates biosynthesis of two antibiotics, prodigiosin and carbapenem, in Serratia via both quorum-sensing-dependent and -independent pathways. Mol Microbiol 47:303–320 [View Article][PubMed]
    [Google Scholar]
  23. Sohaskey C. D., Wayne L. G. 2003; Role of narK2X and narGHJI in hypoxic upregulation of nitrate reduction by Mycobacterium tuberculosis . J Bacteriol 185:7247–7256 [View Article][PubMed]
    [Google Scholar]
  24. Soliveri J., Brown K. L., Buttner M. J., Chater K. F. 1992; Two promoters for the whiB sporulation gene of Streptomyces coelicolor A3(2) and their activities in relation to development. J Bacteriol 174:6215–6220[PubMed]
    [Google Scholar]
  25. Stewart V. 2003; Nitrate- and nitrite-responsive sensors NarX and NarQ of proteobacteria. Biochem Soc Trans 31:1–10 [View Article]
    [Google Scholar]
  26. Takeno S., Ohnishi J., Komatsu T., Masaki T., Sen K., Ikeda M. 2007; Anaerobic growth and potential for amino acid production by nitrate respiration in Corynebacterium glutamicum . Appl Microbiol Biotechnol 75:1173–1182 [View Article][PubMed]
    [Google Scholar]
  27. Thomas L., Hodgson D. A., Wentzel A., Nieselt K., Ellingsen T. E., Moore J., Morrissey E. R., Legaie R. STREAM Consortium et al. 2012; Metabolic switches and adaptations deduced from the proteomes of Streptomyces coelicolor wild type and phoP mutant grown in batch culture. Mol Cell Proteomics 11:M111.013797 [View Article][PubMed]
    [Google Scholar]
  28. Towbin H., Staehelin T., Gordon J. 1979; Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications. Proc Natl Acad Sci U S A 76:4350–4354 [View Article][PubMed]
    [Google Scholar]
  29. van Keulen G., Jonkers H. M., Claessen D., Dijkhuizen L., Wösten H. A. 2003; Differentiation and anaerobiosis in standing liquid cultures of Streptomyces coelicolor . J Bacteriol 185:1455–1458 [View Article][PubMed]
    [Google Scholar]
  30. van Keulen G., Alderson J., White J., Sawers R. G. 2005; Nitrate respiration in the actinomycete Streptomyces coelicolor . Biochem Soc Trans 33:210–212 [View Article][PubMed]
    [Google Scholar]
  31. van Keulen G., Alderson J., White J., Sawers R. G. 2007; The obligate aerobic actinomycete Streptomyces coelicolor A3(2) survives extended periods of anaerobic stress. Environ Microbiol 9:3143–3149 [View Article][PubMed]
    [Google Scholar]
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