1887

Abstract

RmpM is a periplasmic protein from that comprises an N-terminal domain (residues 1–47) and a separate globular C-terminal domain (residues 65–219) responsible for binding to peptidoglycan. Here we show, through the use of size exclusion chromatography and pull-down assays, that a recombinant N-terminal fragment of RmpM binds to both the major outer membrane porins, PorA and PorB. Analysis by semi-native SDS-PAGE established that both recombinant full-length RmpM and an N-terminal fragment, but not the C-terminal peptidoglycan-binding domain, were sufficient to stabilize the PorA and PorB oligomeric complexes. Evidence from binding assays indicated that the -diaminopimelate moiety plays an important role in peptidoglycan recognition by RmpM. Site-directed mutagenesis showed that two highly conserved residues, Asp120 and Arg135, play an important role in peptidoglycan binding. The yield of outer membrane vesicles, which have been used extensively as a vaccine against was considerably higher in an strain expressing a truncated N-terminal fragment of RmpM (ΔC-term ) than in the WT strain. The native oligomeric state of the PorA/PorB complexes was maintained in this strain. We conclude that the dual functions of RmpM are independent, and that it is possible to use this knowledge to engineer a strain with higher yield of outer membrane vesicles, whilst preserving PorA and PorB, which are key protective antigens, in their native oligomeric state.

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2016-02-01
2024-04-19
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References

  1. Ashkenazy H., Erez E., Martz E., Pupko T., Ben-Tal N. 2010; ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids. Nucleic Acids Res 38:(Web Server)W529–W533 [View Article][PubMed]
    [Google Scholar]
  2. Atrih A., Bacher G., Allmaier G., Williamson M. P., Foster S. J. 1999; Analysis of peptidoglycan structure from vegetative cells of Bacillus subtilis 168 and role of PBP 5 in peptidoglycan maturation. J Bacteriol 181:3956–3966[PubMed]
    [Google Scholar]
  3. De Mot R., Vanderleyden J. 1994; The C-terminal sequence conservation between OmpA-related outer membrane proteins and MotB suggests a common function in both Gram-positive and Gram-negative bacteria, possibly in the interaction of these domains with peptidoglycan. Mol Microbiol 12:333–334 [View Article][PubMed]
    [Google Scholar]
  4. Derrick J. P., Urwin R., Suker J., Feavers I. M., Maiden M. C. J. 1999; Structural and evolutionary inference from molecular variation in Neisseria porins. Infect Immun 67:2406–2413[PubMed]
    [Google Scholar]
  5. Feavers I. M., Pizza M. 2009; Meningococcal protein antigens and vaccines. Vaccine 27:(Suppl. 2)B42–B50 [View Article][PubMed]
    [Google Scholar]
  6. Frasch C. E., Zollinger W. D., Poolman J. T. 1985; Serotype antigens of Neisseria meningitidis and a proposed scheme for designation of serotypes. Rev Infect Dis 7:504–510 [View Article][PubMed]
    [Google Scholar]
  7. Glauner B. 1988; Separation and quantification of muropeptides with high-performance liquid chromatography. Anal Biochem 172:451–464 [View Article][PubMed]
    [Google Scholar]
  8. Granoff D. M. 2010; Review of meningococcal group B vaccines. Clin Infect Dis 50:(Suppl. 2)S54–S65 [View Article][PubMed]
    [Google Scholar]
  9. Grizot S., Buchanan S. K. 2004; Structure of the OmpA-like domain of RmpM from Neisseria meningitidis . Mol Microbiol 51:1027–1037 [View Article][PubMed]
    [Google Scholar]
  10. Jansen C., Wiese A., Reubsaet L., Dekker N., de Cock H., Seydel U., Tommassen J. 2000; Biochemical and biophysical characterization of in vitro folded outer membrane porin PorA of Neisseria meningitidis . Biochim Biophys Acta 1464:284–298 [View Article][PubMed]
    [Google Scholar]
  11. Kaaijk P., van Straaten I., van de Waterbeemd B., Boot E. P., Levels L. M., van Dijken H. H., van den Dobbelsteen G. P. 2013; Preclinical safety and immunogenicity evaluation of a nonavalent PorA native outer membrane vesicle vaccine against serogroup B meningococcal disease. Vaccine 31:1065–1071 [View Article][PubMed]
    [Google Scholar]
  12. Klugman K. P., Gotschlich E. C., Blake M. S. 1989; Sequence of the structural gene (rmpM) for the class 4 outer membrane protein of Neisseria meningitidis, homology of the protein to gonococcal protein III and Escherichia coli OmpA, and construction of meningococcal strains that lack class 4 protein. Infect Immun 57:2066–2071[PubMed]
    [Google Scholar]
  13. Koebnik R., Locher K. P., Van Gelder P. 2000; Structure and function of bacterial outer membrane proteins: barrels in a nutshell. Mol Microbiol 37:239–253 [View Article][PubMed]
    [Google Scholar]
  14. Marzoa J., Abel A., Sánchez S., Chan H., Feavers I., Criado M. T., Ferreirós C. M. 2009; Analysis of outer membrane porin complexes of Neisseria meningitidis in wild-type and specific knock-out mutant strains. Proteomics 9:648–656 [View Article][PubMed]
    [Google Scholar]
  15. Marzoa J., Sánchez S., Ferreirós C. M., Criado M. T. 2010; Identification of Neisseria meningitidis outer membrane vesicle complexes using 2-D high resolution clear native/SDS-PAGE. J Proteome Res 9:611–619 [View Article][PubMed]
    [Google Scholar]
  16. Minetti C. A., Tai J. Y., Blake M. S., Pullen J. K., Liang S. M., Remeta D. P. 1997; Structural and functional characterization of a recombinant PorB class 2 protein from Neisseria meningitidis. Conformational stability and porin activity. J Biol Chem 272:10710–10720 [View Article][PubMed]
    [Google Scholar]
  17. Noinaj N., Easley N. C., Oke M., Mizuno N., Gumbart J., Boura E., Steere A. N., Zak O., Aisen P., other authors. 2012; Structural basis for iron piracy by pathogenic Neisseria . Nature 483:53–58 [View Article][PubMed]
    [Google Scholar]
  18. Park J. S., Lee W. C., Yeo K. J., Ryu K. S., Kumarasiri M., Hesek D., Lee M., Mobashery S., Song J. H., other authors. 2012; Mechanism of anchoring of OmpA protein to the cell wall peptidoglycan of the Gram-negative bacterial outer membrane. FASEB J 26:219–228 [View Article][PubMed]
    [Google Scholar]
  19. Parsons L. M., Lin F., Orban J. 2006; Peptidoglycan recognition by Pal, an outer membrane lipoprotein. Biochemistry 45:2122–2128 [View Article][PubMed]
    [Google Scholar]
  20. Pautsch A., Schulz G. E. 2000; High-resolution structure of the OmpA membrane domain. J Mol Biol 298:273–282 [View Article][PubMed]
    [Google Scholar]
  21. Persson C., Oldenvi S., Steiner H. 2007; Peptidoglycan recognition protein LF: a negative regulator of Drosophila immunity. Insect Biochem Mol Biol 37:1309–1316 [View Article][PubMed]
    [Google Scholar]
  22. Potterton L., McNicholas S., Krissinel E., Gruber J., Cowtan K., Emsley P., Murshudov G. N., Cohen S., Perrakis A., Noble M. 2004; Developments in the CCP4 molecular-graphics project. Acta Crystallogr D Biol Crystallogr 60:2288–2294 [View Article][PubMed]
    [Google Scholar]
  23. Prinz T., Tommassen J. 2000; Association of iron-regulated outer membrane proteins of Neisseria meningitidis with the RmpM (class 4) protein. FEMS Microbiol Lett 183:49–53 [View Article][PubMed]
    [Google Scholar]
  24. Roujeinikova A. 2008; Crystal structure of the cell wall anchor domain of MotB, a stator component of the bacterial flagellar motor: implications for peptidoglycan recognition. Proc Natl Acad Sci U S A 105:10348–10353 [View Article][PubMed]
    [Google Scholar]
  25. Saleem M., Prince S. M., Rigby S. E. J., Imran M., Patel H., Chan H., Sanders H., Maiden M. C., Feavers I. M., Derrick J. P. 2013; Use of a molecular decoy to segregate transport from antigenicity in the FrpB iron transporter from Neisseria meningitidis . PLoS One 8:e56746 [View Article][PubMed]
    [Google Scholar]
  26. Sánchez S., Abel A., Arenas J., Criado M. T., Ferreirós C. M. 2006; Cross-linking analysis of antigenic outer membrane protein complexes of Neisseria meningitidis . Res Microbiol 157:136–142 [View Article][PubMed]
    [Google Scholar]
  27. Serino L., Nesta B., Leuzzi R., Fontana M. R., Monaci E., Mocca B. T., Cartocci E., Masignani V., Jerse A. E., other authors. 2007; Identification of a new OmpA-like protein in Neisseria gonorrhoeae involved in the binding to human epithelial cells and in vivo colonization. Mol Microbiol 64:1391–1403 [View Article][PubMed]
    [Google Scholar]
  28. Tanabe M., Nimigean C. M., Iverson T. M. 2010; Structural basis for solute transport, nucleotide regulation, and immunological recognition of Neisseria meningitidis PorB. Proc Natl Acad Sci U S A 107:6811–6816 [View Article][PubMed]
    [Google Scholar]
  29. Ünal C. M., Schaar V., Riesbeck K. 2011; Bacterial outer membrane vesicles in disease and preventive medicine. Semin Immunopathol 33:395–408 [View Article][PubMed]
    [Google Scholar]
  30. van de Waterbeemd B., Streefland M., van der Ley P., Zomer B., van Dijken H., Martens D., Wijffels R., van der Pol L. 2010; Improved OMV vaccine against Neisseria meningitidis using genetically engineered strains and a detergent-free purification process. Vaccine 28:4810–4816 [View Article][PubMed]
    [Google Scholar]
  31. van de Waterbeemd B., Zomer G., van den Ijssel J., van Keulen L., Eppink M. H., van der Ley P., van der Pol L. A. 2013; Cysteine depletion causes oxidative stress and triggers outer membrane vesicle release by Neisseria meningitidis; implications for vaccine development. PLoS One 8:e54314 [View Article][PubMed]
    [Google Scholar]
  32. van der Ley P., Heckels J. E., Virji M., Hoogerhout P., Poolman J. T. 1991; Topology of outer membrane porins in pathogenic Neisseria spp. Infect Immun 59:2963–2971[PubMed]
    [Google Scholar]
  33. Volokhina E. B., Beckers F., Tommassen J., Bos M. P. 2009; The β-barrel outer membrane protein assembly complex of Neisseria meningitidis . J Bacteriol 191:7074–7085 [View Article][PubMed]
    [Google Scholar]
  34. Wang Y., Kim K. S. 2002; Role of OmpA and IbeB in Escherichia coli K1 invasion of brain microvascular endothelial cells in vitro and in vivo . Pediatr Res 51:559–563 [View Article][PubMed]
    [Google Scholar]
  35. Yao Y., Barghava N., Kim J., Niederweis M., Marassi F. M. 2012; Molecular structure and peptidoglycan recognition of Mycobacterium tuberculosis ArfA (Rv0899). J Mol Biol 416:208–220 [View Article][PubMed]
    [Google Scholar]
  36. Yazdankhah S. P., Caugant D. A. 2004; Neisseria meningitidis: an overview of the carriage state. J Med Microbiol 53:821–832 [View Article][PubMed]
    [Google Scholar]
  37. Zeth K., Diederichs K., Welte W., Engelhardt H. 2000; Crystal structure of Omp32, the anion-selective porin from Comamonas acidovorans, in complex with a periplasmic peptide at 2.1 Å resolution. Structure 8:981–992 [View Article][PubMed]
    [Google Scholar]
  38. Zeth K., Kozjak-Pavlovic V., Faulstich M., Fraunholz M., Hurwitz R., Kepp O., Rudel T. 2013; Structure and function of the PorB porin from disseminating Neisseria gonorrhoeae . Biochem J 449:631–642 [View Article][PubMed]
    [Google Scholar]
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