Sequence of the 305°–307° region of the Bacillus subtilis chromosome

References

1. Akhmetzjanov A. A., Vakhitov V. A. 1992; Molecular cloning and nucleotide sequence of the DNA polymerase gene from Thermus flavus. Nucleic Acids Res 20:5839
   [Google Scholar]
2. Asakura K., Komatsubara H., Soga S., Yomo T., Oka M., Emi S., Urabe I. 1993; Cloning, nucleotide sequence, and expression in Escherichia coli of DNA polymerase gene (polA) from Thermus thermophilus hb8. J Ferment Bioenerg 76:265–269
   [Google Scholar]
3. Beck C. F., Warren R. A. J. 1988; Divergent promoters, a common form of gene organization. Microbiol Rev 52:318–326
   [Google Scholar]
4. Casaregola S., Jacq A., Laoudj D., McGurk G., Margarson S., Tempete M., Norris V., Holland I. B. 1992; Cloning and analysis of the entire Escherichia coli ams gene, ams is identical to hmp1 and encodes a 114 kDa protein that migrates as a 180 kDa protein. J Mol Biol 228:30–40
   [Google Scholar]
5. Chambers S. P., Prior S. E., Barstow D. A., Minton N. P. 1988; The pMTL nic⁻ cloning vectors. I. Improved pUC polylinker regions to facilitate the use of sonicated DNA for nucleotide sequencing. Gene 68:139–149
   [Google Scholar]
6. Chen L., Helmann J. D. 1994; The Bacillus subtilis σ^D-dependent operon encoding the flagellar proteins FliD, FliS and FliT. J Bacterial 176:3093–3101
   [Google Scholar]
7. Chung C. T., Miller R. H. 1988; A rapid and convenient method for the preparation and storage of competent bacterial cells. Nucleic Acids Res 16:
   [Google Scholar]
8. Dale G. E., Then R. L., Stuber D. 1993; Characterization of the gene for chromosomal trimethoprim-sensitive dihydrofolate re-ductase of Staphylococcus aureus ATCC 25923. Antimicrob Agents Chemother 37:1400–1405
   [Google Scholar]
9. Del Sal G., Manfioletti G., schneider C. 1988; A one-tube plasmid DNA mini-preparation suitable for sequencing. Nucleic Acids Res 16:9878
   [Google Scholar]
10. Devereux J., Haeberli P., Smithies O. 1984; A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res 12:387–395
    [Google Scholar]
11. Fahmy F., Flossdorf J., Claus D. 1985; The DNA base composition of the type strains of the genus Bacillus. Syst Appl Microbiol 6:60–65
    [Google Scholar]
12. Feng D., Doolittle R. 1987; Progressive sequence alignment as a prerequisite to correct phylogenetic trees. J Mol Evol 25:351–360
    [Google Scholar]
13. Fleischmann R. D. others 1995; Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. science 269:496–512
    [Google Scholar]
14. Fraser C. M. others 1995; The minimal gene complement of Mycoplasma genitalium. science 270:397–403
    [Google Scholar]
15. Gillen K. L., Hughes K. T. 1991; Molecular characterization of flgM, a gene encoding a negative regulator of flagellin synthesis in Salmonella typhimurium. J Bacteriol 173:6453–6459
    [Google Scholar]
16. Glaser P., Kunst F., Arnaud M., Coudart M. -P., Gonzales W., Hullo M. -F., lonescu M., Lubochinsky B., Marcelino L., Moszer I., Presecan E., Santana M., schneider E., schweizer J., Vertes A., Rapoport G., Danchin A. 1993; Bacillus subtilis genome project: cloning and sequencing of the 97 kb region from 325° to 333°. Mol Microbiol 10:371–384
    [Google Scholar]
17. Grossberger D. 1987; Minipreps of DNA from bacteriophage lambda. Nucleic Acids Res 15:6737
    [Google Scholar]
18. Guidolin A., Morona J. K., Morona R., Hansman D., Paton J. C. 1994; Nucleotide sequence analysis of genes essential for capsular polysaccharide biosynthesis in Streptococcus pneumoniae type 19F. Infect Immun 62:5384–5396
    [Google Scholar]
19. Hanahan D. 1983; Studies on transformation of Escherichia coliwith plasmids. J Mol Biol 166:557–580
    [Google Scholar]
20. Henner D. J., Yang M., Ferrari E. 1988; Localization of Bacillus subtilis sacU (Hy) mutations of two linked genes with similarities to the conserved procaryotic family of two-component signalling systems. J Bacteriol 170:5102–5109
    [Google Scholar]
21. Homma M., DeRosier D. J., Macnab R. M. 1990; Flagellar hook and hook-associated proteins of Salmonella typhimurium and their relationship to other axial components of the flagellum. J Mol Biol 213:819–832
    [Google Scholar]
22. Johnson C. H., Kruft V., Subramanian A. R. 1990; Identification of a plastid-specific ribosomal protein in the 30S subunit of chloroplast ribosomes and isolation of the cDNA clone encoding its cytoplasmic precursor. J Biol Chem 265:12790–12795
    [Google Scholar]
23. Karamata D., Gross J. D. 1970; Isolation and genetic analysis of temperature sensitive mutants of B. subtilis defective in DNA synthesis. Mol Gen Genet 108:277–287
    [Google Scholar]
24. Klein M., Meens J., Freudl R. 1995; Functional characterization of the Staphylococcus carnosus SecA protein in Escherichia coli and Bacillus subtilis secA mutant strains. FEMS Microbiol Lett 131:271–277
    [Google Scholar]
25. Koonin E. V., Bork P., Sander C. 1994; Yeast chromosome III : new gene functions. EMBO J 13:493–503
    [Google Scholar]
26. Kunst F., Débarbouillé M., Msadek T., Young M., Mauél C., Klier A., Rapoport G., Dedonder R. 1988; Deduced polypeptides encoded by the Bacillus subtilis sacU locus share homology with two-component sensor-regulator systems. J Bacterial 170:5093–5101
    [Google Scholar]
27. LaVallie E. R., Stahl M. L. 1989; Cloning of the flagellin gene from Bacillus subtilis and complementation studies of an in vitro-derived deletion mutation. J Bacteriol 171:3085–3094
    [Google Scholar]
28. Lazarevic V., Margot P., Suido B., Karamata D. 1992; Sequencing and analysis of the Bacillus subtilis lytRABC divergon: a regulatory unit encompassing the structural genes of the N-acetylmuramoyl-L-alanine amidase and its modifier. J Gen Microbiol 138:1949–1961
    [Google Scholar]
29. Lazarevic V., Mauël G., Freymond P. -P., Margot P., Karamata D. 1995; Sequence analysis of the 308° to 311° segment of the Bacillus subtilis 168 chromosome, a region devoted to cell wall metabolism, containing non-coding grey holes which reveal chromosomal rearrangements. Microbiology 141:329–335
    [Google Scholar]
30. Ligozzi M., Pittaluga F., Fontana R. 1993; Identification of a genetic element (psr) which negatively controls expression of Enterococcus hirae penicillin-binding protein 5. J Bacteriol 175:2046–2051
    [Google Scholar]
31. Liu M. Y., Yang H., Romeo T. 1995; The product of the pleiotropic Escherichia coli gene csrA modulates glycogen biosynthesis via effects on mRNA stability. J Bacteriol 177:2663–2672
    [Google Scholar]
32. Londoño-Vallejo J. A., Dubnau D. 1993; comF, a Bacillus subtilislate competence locus, encodes a protein similar to ATP-dependent RNA/DNA helicases. Mol Microbiol 9:119–131
    [Google Scholar]
33. Margot P., Mauël C., Karamata D. 1994; The gene of the N-acetylglucosaminidase, a Bacillus subtilis 168 cell wall hydrolase not involved in vegetative cell autolysis. Mol Microbiol 12:535–545
    [Google Scholar]
34. Márquez L. M., Helmann J. D., Ferrari E., Parker H. M., Ordal G. W., Chamberlin M. J. 1990; Studies of σ^D-dependent functions in Bacillus subtilis. J Bacteriol 172:3435–3443
    [Google Scholar]
35. Mauël C., Young M., Margot P., Karamata D. 1989; The essential nature of teichoic acids in Bacillus subtilis as revealed by insertional mutagenesis. Mol Gen Genet 215:388–394
    [Google Scholar]
36. Merrick M. J., Coppard J. R. 1989; Mutations in genes downstream of the rpoN gene (encoding σ⁵⁴) of Klebsiella pneumoniaeaffect expression from σ⁵⁴-dependent promoters. Mol Microbiol 3:1765–1775
    [Google Scholar]
37. Mirel D. B., Chamberlin M. J. 1989; The Bacillus subtilis flagellin gene (hag) is transcribed by the σ²⁸ form of RNA polymerase. J Bacteriol 171:3095–3101
    [Google Scholar]
38. Mirel D. B., Lauer P., Chamberlin M. J. 1994; Identification of flagellar synthesis regulatory and structural genes in a σ^D-dependent operon of Bacillus subtilis. J Bacteriol 176:4492–4500
    [Google Scholar]
39. Msadek T., Kunst F., Henner D., Klier A., Rapoport G., Dedonder R. 1990; Signal transduction pathway controlling synthesis of a class of degradative enzymes in Bacillus subtilis:expression of the regulatory genes and analysis of mutations in degSand degU. J Bacteriol 172:824–834
    [Google Scholar]
40. Nakahigashi K., Inokuchi H. 1990; Nucleotide sequence between the fadB gene and the rrnA operon from Escherichia coli. Nucleic Acids Res 18:6439
    [Google Scholar]
41. Roggiani M., Hahn J., Dubnau D. 1990; Suppression of early competence mutations in Bacillus subtilis by mec mutations. J Bacteriol 172:4056–4063
    [Google Scholar]
42. Romeo T., Gong M., Liu M. Y., Brun-Zinkernagel A. -M. 1993; Identification and molecular characterization of csrA, a pleiotropic gene from Escherichia coli that affects glycogen biosynthesis, gluconeogenesis, cell size, and surface properties. J Bacteriol 175:4744–4755
    [Google Scholar]
43. Rouch D. A., Messerotti L. J., Loo L. S., Jackson C. A., Skurray R. A. 1989; Trimethoprim resistance transposon Tn4003 from Staphylococcus aureus encodes genes for a dihydrofolate reductase and thymidylate synthetase flanked by three copies of IS257. Mol Microbiol 3:161–175
    [Google Scholar]
44. Sadaie Y., Takamatsu H., Nakamura K., Yamane K. 1991; Sequencing reveals similarity of the wild-type div⁺ gene of Bacillus subtilis to the Escherichia coli secA gene. Gene 98:101–105
    [Google Scholar]
45. Sambrook J., Fritsch E. F., Maniatis T. 1989 Molecular Cloning-, a Laboratory Manual. Cold Spring Harbor, NY:: Cold Spring Harbor Laboratory.;
    [Google Scholar]
46. Sanger F., Nicklen S., Coulson A. R. 1977; DNA sequencing with chain-terminating inhibitors. Proc Natl Acad sci USA 745463–5467
    [Google Scholar]
47. Sharp P. M., Higgins D. G., Shields D. G., Devine K. M., Hoch J. A. 1990; Bacillus subtilis gene sequences. In Genetics and Biotechnology of Bacilli 3 pp. 89–98 Zukowski M. M., Ganesan A. T., Hoch J. A. Edited by San Diego:: Academic Press.;
    [Google Scholar]
48. Tan X., Varughese M., Widger W. R. 1994; A light-repressed transcript found in Synechococcus PC 7002 is similar to a chloroplast-specific small subunit ribosomal protein and to a transcription modulator protein associated with sigma 54. J Biol Chem 269:20905–20912
    [Google Scholar]
49. Tanaka T., Kawata M. 1988; Cloning and characterization of Bacillus subtilis iep, which has positive and negative effects on production of extracellular proteases. J Bacteriol 170:3593–3600
    [Google Scholar]
50. Yanisch-Perron C., Vieira J., Messing J. 1985; Improved Ml3 phage cloning vectors and host strains: nucleotide sequences of the M13mpl8 and pUC19 vectors. Gene 33:103–119
    [Google Scholar]