The planctomycetes: emerging models for microbial ecology, evolution and cell biology

References

1. Albrecht W., Fischer A., Smida J., Stackebrandt E. 1987; Verrucomicrobium spinosum, a eubacterium representing an ancient line of descent.. Syst Appl Microbiol 10:57–62
   [Google Scholar]
2. Alldredge A.L., Cohen Y. 1987; Can microscale chemical patches persist in the sea? Microelectrode study of marine snow, fecal pellets.. Science 235:689–691
   [Google Scholar]
3. Bauld J., Staley J.T. 1976; Planetomjces marts sp. nov.: a marine isolate of the Planctomyces-Blastocaulis group of budding bacteria.. J Gen Microbiol 97:45–55
   [Google Scholar]
4. Bianchi M., Marty D., Teyssté J.-L., Fowler S.W. 1992; Strictly aerobic and anaerobic bacteria associated with sinking particulate matter and zooplankton fecal pellets.. Mar Ecol Prog Ser 88:55–60
   [Google Scholar]
5. Bomar D., Giovannoni S., Stackebrandt E. 1988; A unique type of eubacterial 5S rRNA in members of the order Plancto- mycetales.. J Mol Evol 27:121–125
   [Google Scholar]
6. Cavalier-Smith T. 1975; The origin of nuclei and of eukaryotic cells.. Nature 256:463–468
   [Google Scholar]
7. Citovsky V., Zupan J., Warnick D., Zambryski P. 1992; Nuclear localization of Agrobacterium VirE2 protein in plant cells.. Science 256:1802–1805
   [Google Scholar]
8. Cousineau B., Cerpa C., Lefebvre J., Cedergren R. 1992; The sequence of the gene encoding elongation factor Tu from Chlamydia trachomatis compared with those of other organisms.. Gene 120:33–41
   [Google Scholar]
9. De Long E.F., Franks D.G., Alldredge A.I. 1993; Phylogenetic diversity of aggregate-attached vs. free-living marine bacterial assemblages.. Limnol Oceanogr 38:924–934
   [Google Scholar]
10. Ekendahl S., Arlinger J., Ståhl F., Pedersen K. 1994; Characterization of attached bacterial populations in deep granitic groundwater from the Stripa research mine by 16S rRNA gene sequencing and scanning electron microscopy.. Microbiology 140:1575–1583
    [Google Scholar]
11. Embley T.M., Hirt R.P., Williams D.M. 1994; Biodiversity at the molecular level: the domains, kingdoms and phyla of life.. Philos Trans R Soc Eond B Biol Sci 345:21–33
    [Google Scholar]
12. Fitch W.M. 1976; Molecular evolutionary clocks.. In Molecular Evolution pp. 160–178 Ayala F. J. Edited by Sunderland, MA:: Sinauer Associates.;
    [Google Scholar]
13. Franzmann P.D., Skerman V.B.D. 1984; Gemmata obscuriglobus, a new genus and species of the budding bacteria.. Antonie Leeuwenhoek 50:261–268
    [Google Scholar]
14. Fuerst J.A., Webb R.I. 1991; Membrane-bounded nucleoid in the eubacterium Gemmata obscuriglobus. . Proc Natl Acad Sci USA 888184–8188
    [Google Scholar]
15. Fuerst J.A., Sambhi S.K., Paynter J.L., Hawkins J.A. 1991; Isolation of a bacterium resembling Pirellula species from primary tissue culture of the giant tiger prawn (Penaeus monodon).. Appl Environ Microbiol 57:3127–3134
    [Google Scholar]
16. Fuerst J.A., Hawkins J.A., Holmes A., Sly L.I., Moore C.J., Stackebrandt E. 1993; Porphyrobacter neustonensis gen. nov., sp. nov., an aerobic bacteriochlorophyll-synthesizing budding bacterium from fresh water.. Int J Syst Bacteriol 43:125–134
    [Google Scholar]
17. Gibbs P.E.M., Dugaiczyk A. 1994; Reading the molecular clock from the decay of internal symmetry of a gene.. Proc Natl Acad Sci USA 913413–3417
    [Google Scholar]
18. Gimesi N. 1924; Hydrobiologiai Tanulmányok (Hydrobio- logische Studien). I.. Planctomyces Békefii Gim. nov. gen. et sp. pp. 1–8 Budapest:: Kiadja a Magyar Ciszterci Rend.;
    [Google Scholar]
19. Giovannoni S.J., Castenholz R.W. 1989; Genus ‘Isosphaera’ Giovannoni, Schabtach and Castenholz.. In Bergey’s Manual of Systematic Bacteriology 3 pp. 1959–1961 Staley J. T., Bryant M. P., Pfennig N., Holt J. G. Edited by Baltimore:: Williams & Wilkins.;
    [Google Scholar]
20. Giovannoni S.J., Godchaux W. III Schabtach E., Castenholz R.W. 1987a; Cell wall and lipid composition of Isosphaera pallida,a budding eubacterium from hot springs.. J Bacteriol 169:2702–2707
    [Google Scholar]
21. Giovannoni S.J., Schabtach E., Castenholz R.W. 1987b; Isosphaera pallida, gen. and comb, nov., a gliding, budding eubacterium from hot springs.. Arch Microbiol 147:276–284
    [Google Scholar]
22. Granberg K. 1969; Kasviplanktonin merkityksesta vesilaitoksen raakaveden tarkkailussa.. Limnol Foren I Finland Eimnol Symp 1968:34–43
    [Google Scholar]
23. Guglielmi G., Cohen-Bazire G. 1982; Structure et distribution des pores et des perforations de l’enveloppe de peptidoglycane chez quelques cyanobacteries.. Protistologica 18:151–165
    [Google Scholar]
24. Hanert H.H. 1989; Genus Gallionella Ehrenberg.. In Bergey’s Manual of Systematic Bacteriology 3 pp. 1974–1979 Staley J. T., Bryant M. P., Pfennig N., Holt J. G. Edited by Baltimore:: Williams & Wilkins.;
    [Google Scholar]
25. Henrici A.T., Johnson D.E. 1935; Studies of freshwater bacteria. II. Stalked bacteria, a new order of Schizomyces.. J Bacteriol 30:61–93
    [Google Scholar]
26. Hirsch P. 1972; Two identical genera of budding and stalked bacteria: Planctomyces Gimesi 1924 and Blastocaulis Henrici and Johnson 1935.. Int J Syst Bacteriol 22:107–111
    [Google Scholar]
27. Hirsch P., Müller M. 1985; Planctomyces limnophilus sp. nov., a stalked and budding bacterium from freshwater.. Syst Appl Microbiol 6:276–280
    [Google Scholar]
28. Hirsch P., Müller M. 1986; Methods and sources for the enrichment and isolation of budding, nonprosthecate bacteria from freshwater.. Microb Ecol 12:331–341
    [Google Scholar]
29. Hirsch P., Rades-Rohkohl E. 1983; Microbial diversity in a groundwater aquifer in Northern Germany.. Dev Ind Microbiol 24:183–200
    [Google Scholar]
30. Höpfl P., Ludwig W., Schleifer K.-H., Larsen N. 1989; The 23S ribosomal RNA higher-order structure of Pseudomonas cepacia and other prokaryotes.. Eur J Biochem 185:355–364
    [Google Scholar]
31. Hortobágyi T. 1965; Új Planctomyces fajok. [Neue Planctomyces- Arten.]. Bot Közl 52:111–115
    [Google Scholar]
32. Hortobögyi T. 1968; Planctomyces from Vietnam.. Acta Phyto- pathol Acad Sci Flung 3:271–273
    [Google Scholar]
33. Jones J.G. 1978; The distribution of some freshwater planktonic bacteria in two stratified eutrophic lakes.. Freshwater Biol 8:127–140
    [Google Scholar]
34. Kerger B.D., Mancuso C.A., Nichols P.D., White D.C., Langworthy T., Sittig M., Schlesner H., Hirsch P. 1988; The budding bacteria, Pirellula and Planctomyces, with atypical 16S rRNA and absence of peptidoglycan, show eubacterial phospholipids and uniquely high proportions of long chain beta- hydroxy fatty acids in the lipopolysaccharide lipid A.. Arch Microbiol 149:255–260
    [Google Scholar]
35. König H., Schlesner H., Hirsch P. 1984; Cell wall studies on budding bacteria of the Planctomyces/Pasteuria group and on a Prosthecomicrobium sp.. Arch Microbiol 138:200–205
    [Google Scholar]
36. Kristiansen J. 1971; On Planctomyces bekefii and its occurrence in Danish lakes and ponds.. Bot Tidsskr 66:293–302
    [Google Scholar]
37. Lake J.A., Rivera M.C. 1994; Was the nucleus the first endosymbiont?. Proc Natl Acad Sci USA 912880–2881
    [Google Scholar]
38. Lewis W.M. Jr Frost T., Morris D. 1986; Studies of planktonic bacteria in Lake Valencia, Venezuela.. Arch Hydrobiol 106:289–305
    [Google Scholar]
39. Liesack W., Stackebrandt E. 1989; Evidence for unlinked rrn operons in the planctomycete Pirellula marina. . J Bacteriol 171:5025–5030
    [Google Scholar]
40. Liesack W., Stackebrandt E. 1992; Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment.. J Bacteriol 174:5072–5078
    [Google Scholar]
41. Liesack W., König H., Schlesner H., Hirsch P. 1986; Chemical composition of the peptidoglycan-free cell envelopes of budding bacteria of the Pirella/Planctomyces group.. Arch Microbiol 145:361–366
    [Google Scholar]
42. Liesack W., Höpfl P., Stackebrandt E. 1988; Complete nucleotide sequence of a 23S ribosomal RNA gene from Pirellula marina. . Nucleic Acids Res 16:5194
    [Google Scholar]
43. Liesack W., Söller R., Stewart T., Haas H., Giovannoni S. 1992; The influence of tachytelically (rapidly) evolving sequences on the topology of phylogenetic trees-intra- family relationships and the phylogenetic position of Plancto- mycetaceae as revealed by comparative analysis of 16S ribosomal RNA sequences.. Syst Appl Microbiol 15:357–362
    [Google Scholar]
44. Lindsay M.R., Webb R.I., Hosmer H., Fuerst J.A. 1995; Effects of fixative and buffer on morphology and ultrastructure of a freshwater planctomycete, Gemmata obscuriglobus. . J Microbiol Methods 21:45–54
    [Google Scholar]
45. Menke M.A.O.H., Liesack W., Stackebrandt E. 1991; Ribotyping of 16S and 23S rRNA genes and organization of rrn operons in members of the bacterial genera Gemmata, Planctomyces, Thermotoga, Thermus, and Verrucomicrobium. . Arch Microbiol 155:263–271
    [Google Scholar]
46. Metchnikoff E. 1888; Pasteuria ramosa, un représentant des bactéries à division longitudinale.. Ann Inst Pasteur 2:165–170
    [Google Scholar]
47. Neefs J.-M., Vande Peer Y., De Rijk P., Chapelle S., DeWachter R. 1993; Compilation of small ribosomal subunit RNA structures.. Nucleic Acids Res 21:3025–3049
    [Google Scholar]
48. Olsen G.J., Woese C.R., Overbeek R. 1994; The winds of (evolutionary) change: breathing new life into microbiology.. J Bacteriol 176:1–6
    [Google Scholar]
49. O’Toole P.W., Austin J.W., Trust T.J. 1994; Identification and molecular characterization of a major ring-forming surface protein from the gastric pathogen Helicobacter mustelae. . Mol Microbiol 11:349–361
    [Google Scholar]
50. Pedrós-Alió C., Brock T.D. 1982; Assessing biomass and production of bacteria in eutrophic Lake Mendota, Wisconsin.. Appl Env Microbiol 44:203–218
    [Google Scholar]
51. Pierson B.K., Giovannoni S.J., Stahl D.A., Castenholz R.W. 1985; Heliothrix oregonensis, gen. nov., sp. nov., a phototrophic filamentous gliding bacterium containing bacteriochlorophyll a. . Arch Microbiol 142:164–167
    [Google Scholar]
52. Pohlner J., Langenberg U., Meyer T.F. 1990; IgA protease- associated α-proteins of pathogenic Neisseria: nuclear transport and speculations on their role in pathogenesis.. Zentralbl Bakteriol Suppl 19:461–469
    [Google Scholar]
53. Rönner S., Liesack W., Wolters J., Stackebrandt E. 1991; Cloning and sequencing of a large fragment of the atpD-gene of Pirellula marine - a contribution to the phylogeny of Planctomycetales. . Endocytobiosis Cell Res 7:219–229
    [Google Scholar]
54. Sarich V.M., Wilson A.C. 1967; Immunological time scale for hominid evolution.. Science 158:1200–1203
    [Google Scholar]
55. Sayre R.M., Gherna R.L., Wergin W.P. 1983; Morphological and taxonomic reevaluation of Pasteuria ramosa Metchnikoff 1888 and ‘Bacillus penetrans’ Mankau 1975.. Int J Syst Bacteriol 33:636–649
    [Google Scholar]
56. Schleifer K.H., Ludwig W. 1989; Phylogenetic relationships among bacteria.. In The Hierarchy of Life pp. 103–117 Fernholm B., Bremer K., Jornvall H. Edited by Amsterdam:: Elsevier Science.;
    [Google Scholar]
57. Schlesner H. 1986; Pirella marina sp. nov., a budding, peptidoglycan-less bacterium from brackish water.. Syst Appl Microbiol 8:177–180
    [Google Scholar]
58. Schlesner H. 1989; Planctomyces brasiliensis sp. nov., halotolerant bacterium from a salt pit.. Syst Appl Microbiol 12:159–161
    [Google Scholar]
59. Schlesner H. 1994; The development of media suitable for the microorganisms morphologically resembling Planctomyces spp., Pirellula spp., and other Planctomycetales from various aquatic habitats using dilute media.. SystAppl Microbiol 17:135–145
    [Google Scholar]
60. Schlesner H., Hirsch P. 1984; Assignment of ATCC 27377 to Pirella gen. nov. as Pirella staleyi comb. nov.. Int J Syst Bacteriol 34:492–495
    [Google Scholar]
61. Schlesner H., Hirsch P. 1987; Rejection of the genus name Pirella for pear-shaped budding bacteria and proposal to create the genus Pirellula gen. nov.. Int J Syst Bacteriol 37:441
    [Google Scholar]
62. Schlesner H., Stackebrandt E. 1986; Assignment of the genera Planctomyces and Pirella to a new family Planctomycetaceae fam. nov. and description of the order Planctomycetales ord. nov.. Syst Appl Microbiol 8:174–176
    [Google Scholar]
63. Schmaljohann R., Pollingher U., Berman T. 1987; Natural populations of bacteria in Lake Kinneret: observations with scanning electron and epifluorescence microscopy.. Microb Ecol 13:1–12
    [Google Scholar]
64. Schmidt J.M., Starr M.P. 1979a; Corniculate cell surface protrusions in morphotype II of the Blastocaulis-Planctomyces group of budding and appendaged bacteria.. Curr Microbiol 3:187–190
    [Google Scholar]
65. Schmidt J.M., Starr M.P. 1979b; Morphotype V of the Blastocaulis-Planctomyces group of budding and appendaged bacteria: Planctomyces guttaeformis Hortobaeyi (sensu Hadju).. Curr Microbiol 2:195–200
    [Google Scholar]
66. Schmidt J.M., Starr M.P. 1980a; Current sightings, at the respective type localities and elsewhere, of Planctomyces bekefii Gimesi 1924 and Blastocaulis sphaerica Henrici and Johnson 1935.. Curr Microbiol 4:183–188
    [Google Scholar]
67. Schmidt J.M., Starr M.P. 1980b; Some ultrastructural features of Planctomyces bekefii, morphotype I of the Blastocaulis-Planctomyces group of budding and appendaged bacteria.. Curr Microbiol 4:189–194
    [Google Scholar]
68. Schmidt J.M., Starr M.P. 1981; The Blastocaulis-Planctomyces group of budding and appendaged bacteria.. In The Prokaryotes: a Handbook on Habitat, Isolation and Identification of Bacteria 1 pp. 496–504 Starr M. P., Stolp H., Triiper H. G., Balows A., Schlegel H. G. Edited by Berlin: : Springer-Verlag.;
    [Google Scholar]
69. Schmidt J.M., Starr M.P. 1982; Ultrastructural features of budding cells in a prokaryote belonging to morphotype IV of the Blastocaulis-Planctomyces group.. Curr Microbiol 7:7–11
    [Google Scholar]
70. Schmidt J.M., Sharp W.P., Starr M.P. 1981; Manganese and iron encrustations and other features of Planctomyces crassus Hort- obagyi 1965, morphotype lb of the Blastocaulis-Planctomyces group of budding and appendaged bacteria, examined by electron microscopy and X-ray micro-analysis.. Curr Microbiol 5:241–246
    [Google Scholar]
71. Schmidt J.M., Sharp W.P., Starr M.P. 1982; Metallic-oxide encrustations of the nonprosthecate stalks of naturally occurring populations of Planctomyces bekefii. . Curr Microbiol 7:389–394
    [Google Scholar]
72. Sittig M., Schlesner H. 1993; Chemotaxonomic investigation of various prosthecate and/or budding bacteria.. Syst Appl Microbiol 16:92–103
    [Google Scholar]
73. Sogin M.L. 1991; Early evolution and the origin of eukaryotes.. Curr Opin Genet & Dev 1:457–463
    [Google Scholar]
74. Stackebrandt E., Ludwig W., Schubert W., Klink F., Schlesner H., Roggentin T., Hirsch P. 1984; Molecular genetic evidence for early evolutionary origin of budding peptidoglycan-less eubacteria.. Nature 307:735–737
    [Google Scholar]
75. Stackebrandt E., Fischer A., Hirsch P., Roggentin T., Schlesner H. 1986a; The phylogeny of an ancient group of budding peptidoglycan-less eubacteria: the genera Planctomyces and Pirella. . Endocytobiosis Cell Res 3:29–40
    [Google Scholar]
76. Stackebrandt E., Wehmeyer U., Liesack W. 1986b; 16S ribosomal RNA- and cell wall analysis of Gemmata obscuriglobus, a new member of the order Planctomycetales.. FEMS Microbiol Eett 37:289–292
    [Google Scholar]
77. Stackebrandt E., Liesack W., Goebel B.M. 1993; Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis.. FASEB J 7:232–236
    [Google Scholar]
78. Staley J.T. 1973; Budding bacteria of the Pasteuria-Blastobacter group.. Can J Microbiol 19:609–614
    [Google Scholar]
79. Staley J.T. 1981; The genus Pasteuria. . In The Prokaryotes: a Handbook on Habitat, Isolation and Identification of Bacteria 1 pp. 490–492 Starr M. P., Stolp H., Trüper H.G, Balows A., Schlegel H. G. Edited by Berlin:: Springer-Verlag.;
    [Google Scholar]
80. Staley J.T., Marshall K.C., Skerman V.B.D. 1980; Budding and prosthecate bacteria from freshwater habitats of various trophic states.. Microb Ecol 5:245–251
    [Google Scholar]
81. Staley J.T., Fuerst J.A., Giovannoni S., Schlesner H. 1992; The order Planctomycetales and the genera Planctomyces, Pirellula, Gemmata and Isosphaera. . In The Prokaryotes: a Handbook on the Biology of Bacteria: Ecophysiology, Isolation, Identification, Applications, 2nd. IV pp. 3710–3731 Balows A., Trüper H. G., Dworkin M., Harder W., Schleifer K.-H. Edited by New York:: Springer- Verlag.;
    [Google Scholar]
82. Starr M.P., Sayre R.M. 1988; Pasteuria thornei sp. nov. and Pasteuria penetrans sensu stricto emend., mycelial and endospore- forming bacteria parasitic, respectively, on plant-parasitic nematodes of the genera Pratylenchus and Meloidogyne. . Ann Inst Pasteur Microbiol 139:11–31
    [Google Scholar]
83. Starr M.P., Schmidt J.M. 1989; Genus Planctomyces Gimesi 1924.. In Bergey’s Manual of Systematic Bacteriology 3 pp. 1946–1958 Staley J. T., Bryant M. P., Pfennig N., Holt J. G. Edited by Baltimore:: Williams & Wilkins.;
    [Google Scholar]
84. Starr M.P., Sayre R.M., Schmidt J.M. 1983; Assignment of ATCC 27377 to Planctomyces staleyi sp. nov. and conservation of Pasteuria ramosa Metchnikoff 1888 on the basis of type descriptive material.. Int J Syst Bacteriol 33:666–671
    [Google Scholar]
85. Starr M.P., Short K.A., Schmidt J.M. 1984; Exclusion of the filamentous and rosette-forming bacterium ‘Planctomyces gracilis’Hortobágyi 1965 from the Blastocaulis-Planctomyces group.. Int J Syst Bacteriol 34:465–469
    [Google Scholar]
86. Tekniepe B.L., Schmidt i.M., Starr M.P. 1981; Life cycle of a budding and appendaged bacterium belonging to morphotype IV of the Blastocaulis-Planctomyces group.. Curr Microbiol 5:1–6
    [Google Scholar]
87. Van Den Eynde H., Van de Peer Y., Perry J., De Wachter R. 1990; 5S rRNA sequences of representatives of the genera Chlorobium, Prosthecochloris, Thermomicrobium, Cytophaga, Flavobac- terium, Flexibacter and Saprospira and a discussion of the evolution of eubacteria in general.. J Gen Microbiol 136:11–18
    [Google Scholar]
88. Van de Peer Y., Neefs J.-M., De Rijk P., De Vos P., De Wachter R. 1994; About the order of divergence of the major bacterial taxa during evolution.. Syst Appl Microbiol 17:32–38
    [Google Scholar]
89. Ward D.M., Tayne T.A., Anderson K.L., Bateson M.M. 1987; Community structure and interactions among community members in hot spring cyanobacterial mats.. In Ecology of Microbial Communities pp. 179–210 Fletcher M., Gray T. R. G., Jones J. G. Edited by Symposium of the Society for General Microbiology 41 Cambridge:: Cambridge University Press.;
    [Google Scholar]
90. Ward D.M., Weller R., Bateson M.M. 1990; 16S rRNA sequences reveal uncultured inhabitants of a well-studied thermal community.. FEMS Microbiol Rev 75:105–116
    [Google Scholar]
91. Weisburg W.G., Hatch T.P., Woese C.R. 1986; Eubacterial origin of chlamydiae.. J Bacteriol 167:570–574
    [Google Scholar]
92. Woese C.R. 1987; Bacterial evolution.. Microbiol Rev 51:221–271
    [Google Scholar]
93. Woese C.R. 1991; The use of ribosomal RNA in reconstructing evolutionary relationships among bacteria.. In Evolution at the Molecular Eevel pp. 1–24 Selander R. K., Clark A. G., Whittam T. S. Edited by Sunderland, MA:: Sinauer Associates.;
    [Google Scholar]
94. Woese C.R., Stackebrandt E., Ludwig W. 1985; What are mycoplasmas: the relationship of tempo and mode in bacterial evolution.. J Mol Evol 21:305–316
    [Google Scholar]