Phylogeny of the genus Haemophilus as determined by comparison of partial infB sequences

The GenBank accession numbers for the sequences reported in this paper are AJ289629 through AJ289694, AJ290742 through AJ290767, and AJ295746.

References

1. Albritton W. L., Setlow J. K., Thomas M., Sottnek F., Steigerwalt A. G.. 1984; Heterospecific transformation in the genus Haemophilus . Mol Gen Genet193:358–363[CrossRef]
   [Google Scholar]
2. Bourne H. R., Sanders D. A., McCormick F.. 1991; The GTPase superfamily: conserved structure and molecular mechanism. Nature349:117–127[CrossRef]
   [Google Scholar]
3. Broom A., Sneath P. H.. 1981; Numerical taxonomy of Haemophilus . J Gen Microbiol126:123–149
   [Google Scholar]
4. Brosius J., Palmer M. L., Kennedy P. J., Noller H. F.. 1978; Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli . Proc Natl Acad Sci USA75:4801–4805[CrossRef]
   [Google Scholar]
5. Burbach S.. 1987; Reklassifizierung der Gattung Haemophilus Winslow et al., 1917 auf Grund der DNA-Basensequenzhomologie Inaugural Dissertation, Philipps-Universität Marburg; Marburg, Germany:
   [Google Scholar]
6. Casin I., Grimont F., Grimont P. A.. 1986; Deoxyribonucleic acid relatedness between Haemophilus aegyptius and Haemophilus influenzae . Ann Inst Pasteur Microbiol137B:155–163
   [Google Scholar]
7. Cousineau B., Cerpa C., Lefebvre J., Cedergren R.. 1992; The sequence of the gene encoding elongation factor Tu from Chlamydia trachomatis compared with those of other organisms. Gene120:33–41[CrossRef]
   [Google Scholar]
8. De Lamballerie X., Zandotti C., Vignoli C., Bollet C., de Micco P.. 1992; A one-step microbial DNA extraction method using ‘‘Chelex 100’’ suitable for gene amplification. Res Microbiol143:785–790[CrossRef]
   [Google Scholar]
9. De Ley J., Mannheim W., Mutters R.. 7 other authors 1990; Inter- and intrafamilial similarities of rRNA cistrons of the Pasteurellaceae . Int J Syst Bacteriol40:126–137[CrossRef]
   [Google Scholar]
10. Dewhirst F. E., Paster B. J., Olsen I., Fraser G. J.. 1992; Phylogeny of 54 representative strains of species in the family Pasteurellaceae as determined by comparison of 16S rRNA sequences. J Bacteriol174:2002–2013
    [Google Scholar]
11. Dewhirst F. E., Paster B. J., Olsen I., Fraser G. J.. 1993; Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences. Zentbl Bakteriol279:35–44[CrossRef]
    [Google Scholar]
12. Fleischmann R. D., Adams M. D., White O.. 37 other authors 1995; Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science269:496–512[CrossRef]
    [Google Scholar]
13. Haubek D., Dirienzo J. M., Tinoco E. M., Westergaard J., Lopez N. J., Chung C. P., Poulsen K., Kilian M.. 1997; Racial tropism of a highly toxic clone of Actinobacillus actinomycetemcomitans associated with juvenile periodontitis. J Clin Microbiol35:3037–3042
    [Google Scholar]
14. Hedegaard J., Steffensen S. A. de A., Nørskov-Lauritsen N., Mortensen K. K., Sperling-Petersen H. U.. 1999; Identification of Enterobacteriaceae by partial sequencing of the gene encoding translation initiation factor 2. Int J Syst Bacteriol49:1531–1538[CrossRef]
    [Google Scholar]
15. Kidd K. K., Cavalli-Sforza K.. 1971; Number of characters examined and error in reconstruction of evolutionary trees. In Mathematics in the Archaeological and Historical Sciences pp335–346 Edited by Hodson F. R., Tautu P.. Edinburgh: Edinburgh University Press;
    [Google Scholar]
16. Kilian M.. 1976; A taxonomic study of the genus Haemophilus , with the proposal of a new species. J Gen Microbiol93:9–62[CrossRef]
    [Google Scholar]
17. Kilian M.. 1991; Haemophilus . In Manual of Clinical Microbiology pp463–470 Edited by Balows A., Hausler W. J., Herrmann K. L., Isenberg H. D., Shadomy H. J.. Washington, DC: American Society for Microbiology;
    [Google Scholar]
18. Kilian M., Biberstein E. L.. 1984; Haemophilus Winslow, Broadhurst, Buchanan, Krumwiede, Rogers and Smith 1917, 561^AL. In Bergey’s Manual of Systematic Bacteriology pp558–569 Edited by Krieg N. R., Holt J. G.. Baltimore: Williams & Wilkins;
    [Google Scholar]
19. Kilian M., Frederiksen W.. 1981; Identification tables for the Haemophilus–Pasteurella–Actinobacillus group. In Haemophilus, Pasteurella and Actinobacillus pp281–290 Edited by Kilian M., Frederiksen W., Biberstein E. L.. London: Academic Press;
    [Google Scholar]
20. Kimura M.. 1980; A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol16:111–120[CrossRef]
    [Google Scholar]
21. Lomholt H., Poulsen K., Kilian M.. 1995; Comparative characterization of the iga gene encoding IgA1 protease in Neisseria meningitidis , Neisseria gonorrhoeae and Haemophilus influenzae . Mol Microbiol15:495–506[CrossRef]
    [Google Scholar]
22. Mollet C., Drancourt M., Raoult D.. 1997; rpoB sequence analysis as a novel basis for bacterial identification. Mol Microbiol26:1005–1011[CrossRef]
    [Google Scholar]
23. Musser J. M., Kroll J. S., Granoff D. M.. 24 other authors 1990; Global genetic structure and molecular epidemiology of encapsulated Haemophilus influenzae . Rev Infect Dis12:75–111[CrossRef]
    [Google Scholar]
24. Mutters R., Piechulla K., Hinz K. H., Mannheim W.. 1985; Pasteuella avium (Hinz and Kunjara 1977) comb. nov. and Pasteurella volantium sp. nov. Int J Syst Bacteriol35:5–9[CrossRef]
    [Google Scholar]
25. Mutters R., Mannheim W., Bisgaard M.. 1989; Taxonomy of the group. In Pasteurella and Pasteurellosis pp3–34 Edited by Adlam C., Rutter J. M.. London: Academic Press;
    [Google Scholar]
26. Ørskov F., Ørskov I.. 1983; From the national institutes of health. Summary of a workshop on the clone concept in the epidemiology, taxonomy, and evolution of the Enterobacteriaceae and other bacteria. J Infect Dis148:346–357[CrossRef]
    [Google Scholar]
27. Palys T., Nakamura L. K., Cohan F. M.. 1997; Discovery and classification of ecological diversity in the bacterial world: the role of DNA sequence data. Int J Syst Bacteriol47:1145–1156[CrossRef]
    [Google Scholar]
28. Pohl S.. 1981; DNA relatedness in HPA. In Haemophilus, Pasteurella and Actinobacillus pp245–253 Edited by Kilian M., Frederiksen W., Biberstein E. L.. London: Academic Press;
    [Google Scholar]
29. Pohl S., Bertchinger W., Frederiksen W., Mannheim W.. 1983; Transfer of Haemophilus pleuropneumoniae and the Pasteurella haemolytica -like organism causing porcine necrotic pleuropneumonia to the genus Actinobacillus ( Actinobacillus pleuropneumoniae comb. nov.) on the basis of phenotypic and deoxyribonucleic acid relatedness. J Syst Bacteriol33:510–514[CrossRef]
    [Google Scholar]
30. Porras O., Caugant D. A., Gray B., Lagergard T., Levin B. R., Svanborg-Eden C.. 1986; Difference in structure between type b and nontypable Haemophilus influenzae populations. Infect Immun53:79–89
    [Google Scholar]
31. Potts T. V., Mitra T., O’Keefe T., Zambon J. J., Genco R. J.. 1986; Relationships among isolates of oral haemophili as determined by DNA–DNA hybridization. Arch Microbiol145:136–141[CrossRef]
    [Google Scholar]
32. Poyart C., Quesne G., Coulon S., Berche P., Trieu-Cuot P.. 1998; Identification of streptococci to species level by sequencing the gene encoding the manganese-dependent superoxide dismutase. J Clin Microbiol36:41–47
    [Google Scholar]
33. Privitera A., Rappazzo G., Sangari P., Giannino V., Licciardello L., Stefani S.. 1998; Cloning and sequencing of a 16S/23S ribosomal spacer from Haemophilus parainfluenzae reveals an invariant, mosaic-like organisation of sequence blocks. FEMS Microbiol Lett164:289–294[CrossRef]
    [Google Scholar]
34. Proulx C., Munson R. S. J., Grass S., Hamel J., Martin D., Brodeur B. R.. 1991; Identification of a surface-exposed immunodominant epitope on outer membrane protein P1 of Haemophilus influenzae type b. Infect Immun59:963–970
    [Google Scholar]
35. Quentin R., Ruimy R., Rosenau A., Musser J. M., Christen R.. 1996; Genetic identification of cryptic genospecies of Haemophilus causing urogenital and neonatal infections by PCR using specific primers targeting genes coding for 16S rRNA. J Clin Microbiol34:1380–1385
    [Google Scholar]
36. Rivers T. M.. 1922; Influenzae-like bacilli: growth of influenzae-like bacilli on media containing only an autoclave-labile substance as an accessory food factor. Johns Hopkins Hosp Bull33:429–431
    [Google Scholar]
37. Rzhetshy N., Nei M.. 1992; A simple method for estimating and testing minimum-evolution trees. Mol Biol Evol9:945–967
    [Google Scholar]
38. Sacerdot C., Dessen P., Hershey J. W., Plumbridge J. A., Grunberg-Manago M.. 1984; Sequence of the initiation factor IF2 gene: unusual protein features and homologies with elongation factors. Proc Natl Acad Sci USA81:7787–7791[CrossRef]
    [Google Scholar]
39. Sedlacek I., Gerner-Smidt P., Schmidt J., Frederiksen W.. 1993; Genetic relationship of strains of Haemophilus aphrophilus , H. paraphrophilus , and Actinobacillus actinomycetemcomitans studied by ribotyping. Zentbl Bakteriol279:51–59[CrossRef]
    [Google Scholar]
40. Swanson D. S., Kapur V., Stockbauer K., Pan X., Frothingham R., Musser J. M.. 1997; Subspecific differentiation of Mycobacterium avium complex strains by automated sequencing of a region of the gene ( hsp65 ) encoding a 65-kilodalton heat shock protein. Int J Syst Bacteriol47:414–419[CrossRef]
    [Google Scholar]
41. Tjøtta T., Avery O. T.. 1921; Studies on bacterial nutrition. II. Growth accessory substances in the cultivation of haemophilic bacilli. J Exp Med34:97–114[CrossRef]
    [Google Scholar]