1887

Abstract

Chromosomal gene replacement in cyanobacteria often relies upon the availability of drug resistance markers, and thus multiple replacements have been restricted. Here, a versatile gene replacement system without this restriction is reported in a unicellular cyanobacterium, sp. PCC 7942. The system is based upon the dominance of a streptomycin-sensitive gene encoding a ribosomal S12 protein over a streptomycin-resistant allele with a Lys-43→→→Arg substitution. To demonstrate the utility of this method, a cassette consisting of the wild-type gene and a gene conferring kanamycin resistance was integrated into the mutant at the locus encoding photosystem II D1 protein, resulting in streptomycin-sensitive merodiploids. Despite spontaneous gene conversion in these merodiploids to produce streptomycin-resistant progeny at frequencies ranging from 1×10 to 5×10, homologous recombination could be induced by transforming the merodiploids with template plasmids carrying 5′ and 3′ non-coding sequences flanking the D1 coding sequence, which was then replaced by either the ORF for a green fluorescent protein or a precise deletion. Depending on the replication ability of the template plasmids, at most 3–16% of streptomycin-resistant progeny of the merodiploids after transformation were homogenote recombinants with concomitant loss of the gene, even in these polyploid cyanobacteria. The -mediated gene replacement thus makes it possible to construct mutants free from drug resistance markers and opens a way to create cyanobacterial strains bearing an unlimited number of gene replacements.

Loading

Article metrics loading...

/content/journal/micro/10.1099/00221287-147-8-2077
2001-08-01
2024-04-18
Loading full text...

Full text loading...

/deliver/fulltext/micro/147/8/1472077a.html?itemId=/content/journal/micro/10.1099/00221287-147-8-2077&mimeType=html&fmt=ahah

References

  1. Akiyama H., Kanai S., Hirano M., Miyasaka H. 1998; A novel plasmid recombination mechanism of the marine cyanobacterium Synechococcus sp. PCC7002. DNA Res 5:327–334 [CrossRef]
    [Google Scholar]
  2. Binder B. J., Chisholm S. W. 1990; Relationship between DNA cycle and growth rate in Synechococcus sp. strain PCC 6301. J Bacteriol 172:2313–2319
    [Google Scholar]
  3. Bustos S. A., Golden S. S. 1992; Light-regulated expression of the psbD gene family in Synechococcus sp. strain PCC 7942: evidence for the role of duplicated psbD genes in cyanobacteria. Mol Gen Genet 232:221–230
    [Google Scholar]
  4. Cai Y., Wolk C. P. 1990; Use of a conditionally lethal gene in Anabaena sp. strain PCC 7120 to select for double recombinants and to entrap insertion sequences. J Bacteriol 172:3138–3145
    [Google Scholar]
  5. Chauvat F., De Vries L., Van Arkel G. A., Van der Ende A. 1986; A host-vector system for gene cloning in the cyanobacterium Synechocystis PCC 6803. Mol Gen Genet 204:185–191 [CrossRef]
    [Google Scholar]
  6. Crameri A., Whitehorn E. A., Tate E., Stemmer W. P. C. 1996; Improved green fluorescent protein by molecular evolution using DNA shuffling. Nature Biotechnol 14:315–319 [CrossRef]
    [Google Scholar]
  7. Dean D. 1981; A plasmid cloning vector for the direct selection of strains carrying recombinant plasmids. Gene 15:99–102 [CrossRef]
    [Google Scholar]
  8. Finken M., Kirschner P., Meier A., Wrede A., Böttger E. C. 1993; Molecular basis of streptomycin resistance in Mycobacterium tuberculosis : alterations of the ribosomal protein S12 and point mutations within a functional 16S ribosomal RNA pseudoknot. Mol Microbiol 9:1239–1246 [CrossRef]
    [Google Scholar]
  9. Funatsu G., Wittmann H. G. 1972; Ribosomal proteins. XXXIII. Location of amino-acid replacements in protein S12 isolated from Escherichia coli mutants resistant to streptomycin. J Mol Biol 68:547–550 [CrossRef]
    [Google Scholar]
  10. Gay P., Le Coq D., Steinmetz M., Berkelman T., Kado C. I. 1985; Positive selection procedure for entrapment of insertion sequence elements in gram-negative bacteria. J Bacteriol 164:918–921
    [Google Scholar]
  11. Geerts D., Bovy A., Borrias M., Weisbeek P., de Vrieze G. 1995; Inducible expression of heterologous genes targeted to a chromosomal platform in the cyanobacterium Synechococcus sp. PCC 7942. Microbiology 141:831–841 [CrossRef]
    [Google Scholar]
  12. Ghassemian M., Straus N. A. 1996; Fur regulates the expression of iron-stress genes in the cyanobacterium Synechococcus sp. strain PCC 7942. Microbiology 142:1469–1476 [CrossRef]
    [Google Scholar]
  13. Golden S. S., Brusslan J., Haselkorn R. 1986; Expression of a family of psbA genes encoding a photosystem II polypeptide in the cyanobacterium Anacystis nidulans R2. EMBO J 5:2789–2798
    [Google Scholar]
  14. Golden S. S., Nalty M. S., Cho D. S. 1989; Genetic relationship of two highly studied Synechococcus strains designated Anacystis nidulans. J Bacteriol 171:24–29
    [Google Scholar]
  15. Gondo Y., Shioyama Y., Nakao K., Katsuki M. 1996; A novel positive detection system of in vivo mutations in rpsL (strA ) transgenic mice. Mutat Res 360:1–14 [CrossRef]
    [Google Scholar]
  16. Gorini L. 1974; Streptomycin and misreading of the genetic code. In Ribosomes pp 791–803 Edited by Nomura M., Tissieres A., Lengyel P. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory;
    [Google Scholar]
  17. Hashimoto-Gotoh T., Tsujimura A., Kuriyama K., Matsuda S. 1993; Construction and characterization of new host-vector systems for the enforcement-cloning method. Gene 137:211–216 [CrossRef]
    [Google Scholar]
  18. Kuhlemeier C. J., Thomas A. A. M., Van Leen R. W., Borrias W. E., Van Arkel G. A., Van der Ende A., Van den Hondel C. A. M. J. J. 1983; A host-vector system for gene cloning in the cyanobacterium Anacystis nidulans R2. Plasmid 10:156–163 [CrossRef]
    [Google Scholar]
  19. Lederberg J. 1951; Streptomycin resistance: a genetically recessive mutation. J Bacteriol 61:549–550
    [Google Scholar]
  20. Liu X.-Q., Gillham N. W., Boynton J. E. 1989; Chloroplast ribosomal protein gene rps12 of Chlamydomonas reinhardtii . Wild-type sequence, mutation to streptomycin resistance and dependence, and function in Escherichia coli. J Biol Chem 264:16100–16108
    [Google Scholar]
  21. Melancon P., Lemieux C., Brakier-Gingras L. 1988; A mutation in the 530 loop of Escherichia coli 16S ribosomal RNA causes resistance to streptomycin. Nucleic Acids Res 16:9631–9639 [CrossRef]
    [Google Scholar]
  22. Meng B.-Y., Shinozaki K., Sugiura M. 1989; Genes for the ribosomal proteins S12 and S7 and elongation factors EF-G and EF-Tu of the cyanobacterium, Anacystis nidulans : structural homology between 16S rRNA and S7 mRNA. Mol Gen Genet 216:25–30 [CrossRef]
    [Google Scholar]
  23. Montandon P.-E., Nicolas P., Schürmann P., Stutz E. 1985; Streptomycin-resistance of Euglena gracilis chloroplasts: identification of a point mutation in the 16S rRNA gene in an invariant position. Nucleic Acids Res 13:4299–4310 [CrossRef]
    [Google Scholar]
  24. Murphy K. C. 1998; Use of bacteriophage recombination functions to promote gene replacement in Escherichia coli. J Bacteriol 180:2063–2071
    [Google Scholar]
  25. Murphy R. C., Gasparich G. E., Bryant D. A., Porter R. D. 1990; Nucleotide sequence and further characterization of the Synechococcus sp. strain PCC 7002 recA gene: complementation of a cyanobacterial recA mutation by the Escherichia coli recA gene. J Bacteriol 172:967–976
    [Google Scholar]
  26. Nixon P. J., Diner B. A. 1994; Analysis of water-oxidation mutants constructed in the cyanobacterium Synechocystis sp. PCC 6803. Biochem Soc Trans 22:338–343
    [Google Scholar]
  27. Pakrasi H. B. 1995; Genetic analysis of the form and function of photosystem I and photosystem II. Annu Rev Genetics 29:755–776 [CrossRef]
    [Google Scholar]
  28. Powers T., Noller H. F. 1991; A functional pseudoknot in 16S ribosomal RNA. EMBO J 10:2203–2214
    [Google Scholar]
  29. Ried J. L., Collmer A. 1987; An nptI-sacB-sacR cartridge for constructing directed, unmarked mutations in gram-negative bacteria by marker exchange-eviction mutagenesis. Gene 57:239–246 [CrossRef]
    [Google Scholar]
  30. Robinson N. J., Robinson P. J., Gupta A., Bleasby A. J., Whitton B. A., Morby A. P. 1995; Singular overrepresentation of an octameric palindrome, HIP1, in DNA from many cyanobacteria. Nucleic Acids Res 23:729–735 [CrossRef]
    [Google Scholar]
  31. Robinson P. J., Cranenburgh R. M., Head I. M., Robinson N. J. 1997; HIP1 propagates in cyanobacterial DNA via nucleotide substitutions but promotes excision at similar frequencies in Escherichia coli and Synechococcus PCC 7942. Mol Microbiol 24:181–189 [CrossRef]
    [Google Scholar]
  32. Russell C. B., Dahlquist F. W. 1989; Exchange of chromosomal and plasmid alleles in Escherichia coli by selection for loss of a dominant antibiotic sensitivity marker. J Bacteriol 171:2614–2618
    [Google Scholar]
  33. Saiki R. K., Gelfand D. H., Stoffel S., Scharf S. J., Higuchi R., Horn G. T., Mullis K. B., Erlich H. A. 1987; Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239:487–491
    [Google Scholar]
  34. Sakai M., Ogawa T., Matsuoka M., Fukuda H. 1997; Photosynthetic conversion of carbon dioxide to ethylene by the recombinant cyanobacterium, Synechococcus sp. PCC 7942, which harbors a gene for the ethylene-forming enzyme of Pseudomonas syringae. J Ferment Bioeng 84:434–443 [CrossRef]
    [Google Scholar]
  35. Sambrook J., Fritsch E. F., Maniatis T. 1989 Molecular Cloning: a Laboratory Manual , 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory;
    [Google Scholar]
  36. Timms A. R., Steingrimsdottir H., Lehmann A. R., Bridges B. A. 1992; Mutant sequences in the rpsL gene of Escherichia coli B/r: mechanistic implications for spontaneous and ultraviolet light mutagenesis. Mol Gen Genet 232:89–96 [CrossRef]
    [Google Scholar]
  37. Triglia T., Peterson M. G., Kemp D. J. 1988; A procedure for in vitro amplification of DNA segments that lie outside the boundaries of known sequences. Nucleic Acids Res 16:8186 [CrossRef]
    [Google Scholar]
  38. Van der Plas J., Oosterhoff-Teertstra R., Borrias M., Weisbeek P. 1992; Identification of replication and stability functions in the complete nucleotide sequence of plasmid pUH24 from the cyanobacterium Synechococcus sp. PCC 7942. Mol Microbiol 6:653–664 [CrossRef]
    [Google Scholar]
  39. Williams J. G. K. 1988; Construction of specific mutations in photosystem II photosynthetic reaction center by genetic engineering methods in Synechocystis 6803. Methods Enzymol 167:766–778
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/micro/10.1099/00221287-147-8-2077
Loading
/content/journal/micro/10.1099/00221287-147-8-2077
Loading

Data & Media loading...

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error