1887

Abstract

Toxinotyping and PCR ribotyping are two methods that have been used to type isolates. Toxinotyping is based on PCR-RFLP analysis of a 19 kb region encompassing the pathogenicity locus. PCR ribotyping is based on comparison of patterns of PCR products of the 16S–23S rRNA intergenic spacer region. Representative strains (101) from a PCR ribotype library and 22 strains from previously described toxinotypes were analysed to compare ribotyping with toxinotyping. Within this panel of strains all 11 toxinotypes (0–X) described previously and an additional 5 novel toxinotypes (XI–XV) were observed. PCR ribotyping and toxinotyping correlated well and usually all strains within a given ribotype had similar changes in toxin genes. The new toxinotype XI comprises strains that did not express toxins TcdA or TcdB at detectable levels, but contained part of the gene. Strains of toxinotype XII exhibit changes only in the 5′ end of the gene. Toxinotype XIV is composed of strains that have a large insertion at the beginning of the gene. A total of 25 of the 89 tested PCR ribotypes of contained variant strains. It was estimated that they represent 77% of the total number of strains in the Anaerobe Reference Unit collection.

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2001-02-01
2019-09-21
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