1887

Abstract

Nitrate reductase (NaR) catalyses the reduction of nitrate to nitrite via a two-electron transfer. In fungi, the electron donor for NaR is NADPH whereas plants can have two enzymes, NADH:NaR and a bispecific NAD(P)H:NaR. PCR mutagenesis was employed to introduce mutations into the gene of in order to identify residues involved in co-enzyme specificity. The mutation (NiaD T813D, K814Q) altered co-enzyme specificity: the new enzyme had high levels of NADH:NaR activity , whilst all NADPH-associated activity was lost. However, strains carrying this mutation did not grow on nitrate. Enzyme assays suggested that this was not due to inhibition of the mutant enzyme by NADPH. All revertants of the mutants had restored NADPH activity and lost NADH activity. Sequence analysis of these revertants showed that they all contained a single amino acid change at Asp-813, suggesting that this position is crucial to co-enzyme specificity. Further studies have shown that the mutant enzyme was not protected from deactivation by either co-factor in cell-free extracts (unlike the wild-type), and that induction of the glucose-6-phosphate dehydrogenase occurred independently of NADPH levels. These data highlight the importance of functional tests under physiological conditions.

Loading

Article metrics loading...

/content/journal/micro/10.1099/00221287-146-6-1399
2000-06-01
2024-04-19
Loading full text...

Full text loading...

/deliver/fulltext/micro/146/6/1461399a.html?itemId=/content/journal/micro/10.1099/00221287-146-6-1399&mimeType=html&fmt=ahah

References

  1. Bradford M. M. 1976; A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein–dye binding. Anal Biochem 72:248–254 [CrossRef]
    [Google Scholar]
  2. Campbell W. H. 1986; Properties of bromophenol blue as an electron-donor for higher-plant NADH-nitrate reductase. Plant Physiol 82:729–732 [CrossRef]
    [Google Scholar]
  3. Campbell W. H. 1996; Nitrate reductase biochemistry comes of age. Mol Gen Genet 111:355–361
    [Google Scholar]
  4. Cove D. J . 1966; The induction and repression of nitrate reductase in the fungus Aspergillus nidulans. Biochim Biophys Acta 113:51–56 [CrossRef]
    [Google Scholar]
  5. Cove D. J. 1979; Genetic studies of nitrate assimilation in Aspergillus nidulans. Biol Rev 54:291–327 [CrossRef]
    [Google Scholar]
  6. Crawford N. M., Arst H. N. Jr 1993; The molecular genetics of nitrate assimilation in plants. Annu Rev Genet 27:115–146 [CrossRef]
    [Google Scholar]
  7. Dunn-Coleman N. S., Pateman J. A. 1977; In vivo and in vitro studies of nitrate reductase in Aspergillus nidulans. Mol Gen Genet 152:285–293 [CrossRef]
    [Google Scholar]
  8. Friemann A., Brinkmann K., Hachtel W. 1991; Sequence of a cDNA encoding the bi-specific NAD(P)H-nitrate reductase from the tree Betula pendula and identification of conserved protein regions. Mol Gen Genet 227:97–105 [CrossRef]
    [Google Scholar]
  9. Fuhrer L., Kubicek C. P., Rohr M. 1980; Pyridine nucleotide levels and ratios in Aspergillus niger. Can J Microbiol 26:405–408 [CrossRef]
    [Google Scholar]
  10. Garde J., Kinghorn J. R., Tomsett A. B. 1995; Site-directed mutagenesis of nitrate reductase from Aspergillus nidulans. Identification of some essential and some nonessential amino acids among conserved residues. J Biol Chem 270:6644–6650 [CrossRef]
    [Google Scholar]
  11. Garrett R. H., Cove D. J. 1976; Formation of NADPH-nitrate reductase activity in vitro from niaD and cnx mutants. Mol Gen Genet 149:189–196
    [Google Scholar]
  12. Garrett R. H., Nason A. 1969; Further purification and properties of Neurospora crassa nitrate reductase. J Biol Chem 244:2870–2882
    [Google Scholar]
  13. Gonzalez C., Brito N., Marzluf G. A. 1995; Functional analysis by site-directed mutagenesis of individual amino acid residues in the flavin domain of Neurospora crassa nitrate reductase. Mol Gen Genet 249:456–464
    [Google Scholar]
  14. Hankinson O., Cove D. J. 1974; Regulation of the pentose phosphate pathway in the fungus Aspergillus nidulans. Can J Microbiol 21:99–101
    [Google Scholar]
  15. Johnstone I. L., McCabe P. C., Greaves P.7 other authors 1990; Isolation and characterisation of the crnA-niiA-niaD gene cluster for nitrate assimilation in. Aspergillus nidulans. Gene 90:181–192
    [Google Scholar]
  16. Karplus P. A., Daniels M. J., Herriott J. R. 1991; Atomic structure of ferredoxin:NADP+ reductase: prototype for a structurally novel flavoenzyme family. Science 251:60–66 [CrossRef]
    [Google Scholar]
  17. Kinghorn J. R., Campbell E. I. 1989; Amino acid sequence comparisons of nitrate reductases. In Molecular and Genetic Aspects of Nitrate Assimilation pp. 385–403Edited by Wray J. L., Kinghorn J. R. Cambridge: Cambridge University Press;
    [Google Scholar]
  18. Lillo C., Ruoff P. 1992; Hysteretic behavior of nitrate reductase. Evidence of an allosteric binding site for reduced pyridine nucleotides. J Biol Chem 267:13456–13459
    [Google Scholar]
  19. Lu G., Campbell W. H., Schneider G., Lindqvist Y. 1994; Crystal structure of the FAD-containing fragment of corn leaf nitrate reductase at 2·5Å resolution: relationship to other flavoprotein reductases. Structure 2:809–821 [CrossRef]
    [Google Scholar]
  20. Lu G., Lindqvist Y., Schneider G., Dwivedi U. N., Campbell W. H. 1995; Structural studies on corn nitrate reductase: refined structure of the cytochrome b reductase fragment at 2·5 Å, its ADP complex and an active site mutant and modeling of the cytochrome b domain. J Mol Biol 248:931–948 [CrossRef]
    [Google Scholar]
  21. MacDonald D. W., Cove D. J. 1974; Studies on temperature sensitive mutants affecting the assimilatory nitrate reductase of Aspergillus nidulans. Eur J Biochem 46:169–178 [CrossRef]
    [Google Scholar]
  22. Minagawa N., Yoshimoto A. 1982; The in vitro irreversible inactivation by NAD(P)H of assimilatory nitrate reductase from Hansenula anomala. Agric Biol Chem 49:2213–2215
    [Google Scholar]
  23. Pateman J. A., Rever B. M., Cove D. J. 1967; Genetic and biochemical studies of nitrate reduction in Aspergillus nidulans. Biochem J 104:103–111
    [Google Scholar]
  24. Redinbaugh M. G., Campbell W. H. 1998; Nitrate regulation of the oxidative pentose phosphate pathway in maize (Zea mays L.) root plastids: induction of 6-phosphogluconate dehydrogenase activity, protein and transcript levels. Plant Sci 134:129–140 [CrossRef]
    [Google Scholar]
  25. Sambrook J., Fritsch E. F., Maniatis T. 1989 Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory;
    [Google Scholar]
  26. Scrutton N. S., Berry A., Perham R. N. 1990; Redesign of the co-enzyme specificity of a dehydrogenase by protein engineering. Nature 343:38–41 [CrossRef]
    [Google Scholar]
  27. Shiraishi N., Croy C., Kaur J., Campbell W. H. 1998; Engineering of pyridine nucleotide specificity of nitrate reductase: mutagenesis of recombinant cytochrome b reductase fragment of Neurospora crassa NADPH:nitrate reductase. Arch Biochem Biophys 358:104–115 [CrossRef]
    [Google Scholar]
  28. Shondorf T., Hachtel W. 1995; The choice of reducing substrate is altered by replacement of an alanine by a proline in the FAD domain of a bispecific NAD(P)H-nitrate reductase from birch. Plant Physiol 108:203–210 [CrossRef]
    [Google Scholar]
  29. Solomonson L. P., Barber M. J. 1990; Assimilatory nitrate reductase: functional properties and regulation. Annu Rev Plant Phys Plant Mol Biol 41:225–253 [CrossRef]
    [Google Scholar]
  30. Solomonson L. P., Jetschmann K., Vennesland B. 1973; Reversible inactivation of the nitrate reductase of Chlorella vulgaris Beijerinck. Biochim Biophys Acta 309:32–43 [CrossRef]
    [Google Scholar]
  31. Southern E. 1975; Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol 98:503–517 [CrossRef]
    [Google Scholar]
  32. Subramanian K. N., Sorger G. J. 1972; Regulation of nitrate reductase in Neurospora crassa: stability in vivo. J Bacteriol 110:538–546
    [Google Scholar]
  33. Tilburn J., Scazzocchio C., Taylor G. G., Zabickyzissman J. H., Lockington R. A., Davis R. W. 1983; Transformation by integration in Aspergillus nidulans. Gene 26:205–221 [CrossRef]
    [Google Scholar]
  34. Tomsett A. B., Cove D. J . 1979; Deletion mapping of the niiA niaD gene region of Aspergillus nidulans. Genet Res 34:19–32 [CrossRef]
    [Google Scholar]
  35. Vallette F., Mege E., Reiss A., Adesnik M. 1989; Construction of mutant and chimeric genes using the polymerase chain reaction. Nucleic Acids Res 17:723–733 [CrossRef]
    [Google Scholar]
  36. Vega J. M., Greenbaum P., Garrett R. 1975; Studies on the inactivation of the Neurospora crassa assimilatory nitrate reductase in the presence of reduced pyridine nucleotides plus flavin. Biochim Biophys Acta 377:251–257 [CrossRef]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/micro/10.1099/00221287-146-6-1399
Loading
/content/journal/micro/10.1099/00221287-146-6-1399
Loading

Data & Media loading...

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error