IS1626, a new IS900-related Mycobacterium avium insertion sequence

The GenBank accession number for the IS1626 sequence determined in this work is AF071067.

References

1. Berg D. E., Kazic T., Phadnis S., Dodson K. W., Lodge J. K. 1988; Mechanism and regulation of transposition. In Transposition pp. 107–129Edited by Kingsman A. J. New York: Cambridge University Press.;
   [Google Scholar]
2. Bruton C. J., Chater K. F. 1987; Nucleotide sequence of IS110, an insertion sequence of Streptomyces coelicolor A3(2). Nucleic Acids Res 15:7053–7065 [CrossRef]
   [Google Scholar]
3. Dale J. W., Patki A. 1990; Mycobacterial gene expression and regulation. In Molecular Biology of the Mycobacteria pp. 173–198Edited by McFadden J. J. London: Academic Press;
   [Google Scholar]
4. Douglas S. E. 1995; DNA Strider. An inexpensive sequence analysis package for the Macintosh. Mol Biotechnol 3:37–45 [CrossRef]
   [Google Scholar]
5. Feinberg A. P., Vogelstein B. 1984; A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Addendum. Anal Biochem 137:266–267 [CrossRef]
   [Google Scholar]
6. Galas D. J., Chandler M. 1989; Bacterial insertion sequences. In Mobile DNA pp. 109–162Edited by Berg D. E. Washington, DC: American Society for Microbiology;
   [Google Scholar]
7. Green E. P., Tizard M. L. V., Moss M. T., Thompson J., Winterbourne D. J., McFadden J. J., Hermon-Taylor J. 1989; Sequence and characteristics of IS900, an insertion element identified in a human Crohn’s disease isolate of Mycobacterium paratuberculosis. . Nucleic Acids Res 17:9063–9073 [CrossRef]
   [Google Scholar]
8. Grindley N. D. F. 1985; Transpositional recombination in prokaryotes. Annu Rev Biochem 54:863–896 [CrossRef]
   [Google Scholar]
9. Grunstein M., Hogness D. S. 1975; Colony hybridization: a method for the isolation of cloned DNAs that contain a specific gene. Proc Natl Acad Sci USA 72:3961–3965 [CrossRef]
   [Google Scholar]
10. Guerrero C., Bernasconi C., Burki D., Bodmer T., Telenti A. 1995; A novel insertion element from Mycobacterium avium, IS1245, is a specific target for analysis of strain relatedness. J Clin Microbiol 33:304–307
    [Google Scholar]
11. Hernandez Perez M., Fomukong N. G., Hellyer T., Brown I. N., Dale J. W. 1994; Characterization of IS1110, a highly mobile genetic element from Mycobacterium avium. . Mol Microbiol 12:717–724 [CrossRef]
    [Google Scholar]
12. Jacobs W. R., Kalpana G. V., Cirillo J. D., Pascopella L., Snapper S. B., Udani R. A., Jones W., Barletta R. G., Bloom B. R. 1991; Genetic systems for mycobacteria. Methods Enzymol 204:537–555
    [Google Scholar]
13. Kunze Z. M., Wall S., Appelberg R., Silva M. T., Portaels F., McFadden J. J. 1991; IS901, a new member of a widespread class of atypical insertion sequences, is associated with pathogenicity in Mycobacterium avium. . Mol Microbiol 5:2265–2272 [CrossRef]
    [Google Scholar]
14. Kunze Z. M., Portales F., McFadden J. J. 1992; Biologically distinct subtypes of Mycobacterium avium differ in possession of insertion sequence IS901. . J Clin Microbiol 30:2366–2372
    [Google Scholar]
15. Labes G., Bibb M., Wohlleben W. 1997; Isolation and characterization of a strong promoter element from the Streptomyces ghanaensis phage I19 using the gentamicin resistance gene (aacC1) of Tn1696 as reporter. Microbiology 143:1503–1512 [CrossRef]
    [Google Scholar]
16. Leskiw B. K., Mevarech M., Barritt L. S., Jensen S. E., Henderson D. J., Hopwood D. A., Bruton C. J., Chater K. F. 1990; Discovery of an insertion sequence, IS116, from Streptomyces clavuligerus and its relatedness to other transposable elements from actinomycetes. J Gen Microbiol 136:1251–1258 [CrossRef]
    [Google Scholar]
17. McFadden J. J., Kunze Z. M., Portaels F., Labrousse V., Rastogi N. 1992; Epidemiological and genetic markers, virulence factors and intracellular growth of Mycobacterium avium in AIDS. Res Microbiol 143:423–430 [CrossRef]
    [Google Scholar]
18. Morisato D., Kleckner N. 1984; Transposase promotes double strand breaks and single strand joints at Tn10 termini in vivo. Cell 39:181–190 [CrossRef]
    [Google Scholar]
19. Moss M. T., Green E. P., Tizard M. L., Malik Z. P., Hermon-Taylor J. 1991; Specific detection of Mycobacterium paratuberculosis by DNA hybridization with a fragment of the insertion element IS900. . Gut 32:395–398 [CrossRef]
    [Google Scholar]
20. Moss M. T., Malik Z. P., Tizard M. L. V., Green E. P., Sanderson J. D., Hermon-Taylor J. 1992a; IS902, an insertion element of the chronic-enteritis-causing Mycobacterium avium subsp. silvaticum. J Gen Microbiol 138:139–145 [CrossRef]
    [Google Scholar]
21. Moss M. T., Sanderson J. D., Tizard M. L. V., Hermon-Taylor J., El-Zaatari F. A. K., Markesich D. C., Graham D. Y. 1992b; Polymerase chain reaction detection of Mycobacterium paratuberculosis and Mycobacterium avium subsp. silvaticum in long term cultures from Crohn’s disease and control tissues. Gut 33:1209–1213 [CrossRef]
    [Google Scholar]
22. Murray A., Winter N., Lagranderie M.7 other authors 1992; Expression of Escherichia coli β-galactosidase in Mycobacterium bovis BCG using an expression system isolated from Mycobacterium paratuberculosis which induced humoral and cellular immune responses. Mol Microbiol 6:3331–3342 [CrossRef]
    [Google Scholar]
23. Murray V. 1989; Improved double-stranded DNA sequencing using the linear polymerase chain reaction. Nucleic Acids Res 17:8889 [CrossRef]
    [Google Scholar]
24. Nishimori K., Eguchi M., Nakaoka Y., Onodera Y., Ito T., Tanaka K. 1995; Distribution of IS901 in strains of Mycobacterium avium complex from swine by using IS901-detecting primers that discriminate between M. avium and Mycobacterium intracellulare. . J Clin Microbiol 33:2102–2106
    [Google Scholar]
25. Rogall T., Flohr T., Böttger E. C. 1990; Differentiation of Mycobacterium species by direct sequencing of amplified DNA. J Gen Microbiol 136:1915–1920 [CrossRef]
    [Google Scholar]
26. Sambrook J., Fritsch E. F., Maniatis T. 1989 Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor NY: Cold Spring Harbor Laboratory;
    [Google Scholar]
27. Sanger F., Nicklen S., Coulson A. R. 1977; DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74:5463–5467 [CrossRef]
    [Google Scholar]
28. Southern E. M. 1975; Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol 98:503–517 [CrossRef]
    [Google Scholar]
29. Telenti A., Marchesi F., Balz M., Bally F., Böttger E. C., Bodmer T. 1993; Rapid identification of mycobacteria to the species level by polymerase chain reaction and restriction enzyme analysis. J Clin Microbiol 31:175–178
    [Google Scholar]
30. Thierry D., Brisson-Noel A., Mekalanos J. J. 1990; Characterization of a Mycobacterium tuberculosis insertion sequence, IS6110, and its application in diagnosis. J Clin Microbiol 28:2668–2673
    [Google Scholar]
31. Thierry D., Vincent V., Clément, F., Guesdon J.-L. 1993; Isolation of specific DNA fragments of Mycobacterium avium and their possible use in diagnosis. J Clin Microbiol 31:1048–1054
    [Google Scholar]
32. Vary P. H., Andersen P. R., Green E., Hermon-Taylor J., McFadden J. J. 1990; Use of highly specific DNA probes and the polymerase chain reaction to detect Mycobacterium paratuberculosis in Johne^’s disease. J Clin Microbiol 28:933–937
    [Google Scholar]
33. Weiss A. A., Hewlett E. L., Myers G. D, Falkow S. 1983; Pertussis toxin and extracytoplasmic adenylate cyclase as virulence factors. Infect Immun 42:33–41
    [Google Scholar]
34. Xiong Y., Eickbush T. H. 1988; Similarity of reverse transcriptase-like sequences of virus, transposable elements and mitochondrial introns. Mol Biol Evol 5:675–690
    [Google Scholar]