The site-specific recombination locus of mycobacteriophage Ms6 determines DNA integration at the tRNAAlagene of Mycobacterium spp.

References

1. Abremski K.E., Hoess R.H. 1992; Evidence for a second conserved arginine residue in the integrase family of recom-bination proteins.. Protein Eng 5:87–91
   [Google Scholar]
2. Anes E., Portugal I., Moniz-Pereira J. 1992; Insertion into the Mycobacterium smegmatis genome of the aph gene through lysogenization with the temperate mycobacteriophage Ms6.. FEMS Microbiol Lett 95:21–26
   [Google Scholar]
3. Argos P., Landy A., Abremski K. & 9 other authors 1986; The integrase family of site-specific recombinases: regional similarities and global diversity.. EMBO J 5:433–440
   [Google Scholar]
4. Boccard F., Smokvina T., Pernodet J.-L., Friedmann A., Guérineau M. 1989; The integrated conjugative plasmid pSAM2 of Streptomyces ambofaciens is related to temperate bacteriophages.. EMBO J 8:973–980
   [Google Scholar]
5. Brasch M.A., Pettis G.S., Lee S.C., Cohen S.N. 1993; Localization and nucleotide sequences of genes mediating site- specific recombination of the SLP1 element in Streptomyces lividans.. J Bacteriol 175:3067–3074
   [Google Scholar]
6. Brown D.P., Idler K.B., Katz L. 1990; Characterization of the genetic elements required for site-specific integration of plasmid pSE211 in Saccbaropolyspora erythraea.. J Bacteriol 172:1877–1888
   [Google Scholar]
7. Brown D.P., Idler K.B., Backer D.M., Donadio S., Katz L. 1994; Characterization of the genes and attachment sites for site-specific integration of plasmid pSElOl in Saccbaropolyspora erythraea and Streptomyces lividans.. Mol Gen Genet 242:185–193
   [Google Scholar]
8. Campbell A.M. 1962; Episomes.. Adv Genet 11:101–145
   [Google Scholar]
9. Campbell A.M. 1992; Chromosomal insertion sites for phages and plasmids.. J Bacteriol 174:7495–7499
   [Google Scholar]
10. Canard B., Cole S.T. 1990; Lysogenic phages of Clostridium perfringens: mapping of the chromosomal attachment sites.. FEMS Microbiol Lett 66:323–326
    [Google Scholar]
11. Christiansen B., Johnsen M.G., Stendby E., Vogensen F.K., Hammer K. 1994; Characterization of the lactococcal temperate phage TP901-1 and its site-specific integration.. J Bacteriol 176:1069–1076
    [Google Scholar]
12. Christiansen B., Bronsdsted L., Vogensen F.K., Hammer K. 1996; A resolvase-like protein is required for the site-specific integration of the temperate lactococcal bacteriophage TP901-1.. J Bacteriol 178:5164–5173
    [Google Scholar]
13. Craig N.L., Nash H.A. 1984; E. coli integration host factor binds to specific sites in DNA.. Cell 39:707–716
    [Google Scholar]
14. Deininger P.L. 1983; Random subcloning of sonicated DNA: application to shotgun DNA sequence analysis.. Anal Biocbem 129:216–223
    [Google Scholar]
15. Dussurget O., Rodriguez M., Smith I. 1996; An ideR mutant of Mycobacterium smegmatis has derepressed siderophore production and an altered oxidative-stress response.. Mol Microbiol 22:535–544
    [Google Scholar]
16. Haeseleer F., Pollet J.-F., Bollen A., Jacobs P. 1992; Molecular cloning and sequencing of the attachment site and integrase gene of the temperate mycobacteriophage FRAT1.. Nucleic Acids Res 20:1420
    [Google Scholar]
17. Hauser M.A., Socca J.J. 1992; Site-specific integration of the Haemophilus influenzae bacteriophage HP1: location of the boundaries of the phage attachment site.. J Bacteriol 174:6674–6677
    [Google Scholar]
18. Hou Y.M., Schimmel P. 1989; Evidence that a major determinant for identity of a transfer RNA is conserved in evolution.. Biochemistry 28:6800–6804
    [Google Scholar]
19. Lee C.Y., landolo J.J. 1986; Integration of staphylococcal phage L54a occurs by site-specific recombination: structural analysis of the attachment sites.. Proc Natl Acad Sci USA 83:5474–5478
    [Google Scholar]
20. Lee C.Y., landolo J.J. 1988; Structural analysis of staphylococcal bacteriophage 𝜙11 attachment sites.. J Bacteriol 170:2409–2411
    [Google Scholar]
21. Lee M.H., Pascopella L., Jacobs W.R. Jr Hatfull G.F. 1991; Site-specific integration of mycobacteriophage L5: integration- proficient vectors for Mycobacterium smegmatis, Mycobacterium tuberculosis and bacille Calmette-Guerin.. Proc Natl Acad Sci USA 88:3111–3115
    [Google Scholar]
22. Leong J.M., Nunes-DUby S.E., Oser A.B., Lesser C.F., Youderian P., Susskind M.M., Landy A. 1986; Structural and regulatory divergence among site-specific recombination genes of lambdoid phages.. J Mol Biol 189:603–616
    [Google Scholar]
23. Lillehaug D., Birkeland N.K. 1993; Characterization of genetic elements required for site-specific integration of the temperate lactococcal bacteriophage 𝜙LC3 and construction of integrationnegative 0LC3 mutants.. J Bacteriol 175:1745–1755
    [Google Scholar]
24. Madon J., Moretti P. 1987; Site-specific integration and excision of pMEAlOO in Nocardia mediterranei.. Mol Gen Genet 209:257–264
    [Google Scholar]
25. Matsuura M., Noguchi T., Yamaguchi D., Aida T., Asayama M., Takahashi H., Shirai M. 1996; The sre gene (ORF469) encodes a site-specific recombinase responsible for integration of the R4 phage genome.. J Bacteriol 178:3374–3376
    [Google Scholar]
26. Mazodier P., Thompson C., Boccard F. 1990; The chromo-somal integration site of the Streptomyces element pSAM2 overlaps a putative tRNA gene conserved among actinomycetes.. Mol Gen Genet 222:431–434
    [Google Scholar]
27. Omer C.A., Cohen S.N. 1986; Structural analysis of plasmid and chromosomal loci involved in site-specific excision and integration of the SLP1 element of Streptomyces coelicolor.. J Bacteriol 166:996–1006
    [Google Scholar]
28. Pascopella L., Collins F.M., Martin J.M., Lee M.H., Hatfull G.F., Stover C.K., Bloom B.R., Jacobs W.R. Jr 1994; Use of in vivo complementation in Mycobacterium tuberculosis to identify a genomic fragment associated with virulence.. Infect Immun 62:1313–1319
    [Google Scholar]
29. Peña C.E.A., Stoner J.E., Hatfull G.F. 1996; Positions of strand exchange in mycobacteriophage L5 integration and characterization of the attB site.. J Bacteriol 178:5533–5536
    [Google Scholar]
30. Peña C.E.A., Lee M.H., Pedulla M.L., Hatfull G.F. 1997; Characterization of the mycobacteriophage L5 attachment site, attP.. J Mol Biol 266:76–92
    [Google Scholar]
31. Pierson L.S., Kahn M.L. 1987; Integration of satellite bacteriophage P4 in Escherichia coli: DNA sequences of phage and host regions involved in site-specific recombination.. J Mol Biol 196:487–496
    [Google Scholar]
32. Portugal I., Anes E., Moniz-Pereira J. 1989; Temperate mycobacteriophage from Mycobacterium smegmatis.. Acta Leprol 7:S243
    [Google Scholar]
33. Ranes M.G., Rauzier J., Lagranderie M., Gheorghiu M., Gicquel B. 1990; Functional analysis of pAL5000, a plasmid from Mycobacterium fortuitum: construction of a ‘mini’ Mycobacterium-Escherichia coli shuttle vector.. J Bacteriol 172:2793–2797
    [Google Scholar]
34. Rausch H., Lehmann M. 1991; Structural analysis of the actinophage 𝜙C31 attachment site.. Nucleic Acids Res 19:5187–5189
    [Google Scholar]
35. Reiter W.D., Palm P., Yeats S. 1989; Transfer RNA genes frequently serve as integration sites for prokaryotic genetic elements.. Nucleic Acids Res 17:1907–1914
    [Google Scholar]
36. Sambrook J., Fritsch E.F., Maniatis T. 1989 Molecular Cloning: a Laboratory Manual, 2nd edn.. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory;
    [Google Scholar]
37. Sanger F., Nicklen S., Coulson A.R. 1977; DNA sequencing with chain-terminating inhibitors.. Proc Natl Acad Sci USA 74:5463–5467
    [Google Scholar]
38. Smith-Mungo L., Chan I.T., Landy A. 1994; Structure of the P22 att site. Conservation and divergence in the lambda motif of recombinogenic complexes.. J Biol Chem 269:20798–20805
    [Google Scholar]
39. Snapper S.B., Melton R.E., Mustafa S., Kieser T., Jacobs W.R. Jr 1990; Isolation and characterization of efficient plasmid transformation mutants of Mycobacterium smegmatis.. Mol Microbiol 4:1911–1919
    [Google Scholar]
40. Sprinzl M., Hartmann T., Weber J., Blank J., Zeidler R. 1989; Compilation of tRNA sequences and sequences of tRNA genes.. Nucleic Acids Res 17:1–172
    [Google Scholar]
41. Stover C.K., de la Cruz V.F., Fuerst T.R. & 14 other authors 1991; New use of BCG for recombinant vaccines.. Nature 351:456–460
    [Google Scholar]
42. Sun J., Inouye M., Inouye S. 1991; Association of a retroelement with a P4-like cryptic prophage (retronphage 𝜙R73) integrated into the selenocystyl tRNA gene of Escherichia coli.. J Bacteriol 173:4171–4181
    [Google Scholar]
43. Thompson J.F., Moitoso de Vargas L., Koch R., Kahmann R., Landy A. 1987; Cellular factors couple recombination with growth phase: characterization of a new component in the lambda site-specific recombination pathway.. Cell 50:901–908
    [Google Scholar]
44. Weisberg R.A. 1983; Site-specific recombination in phage lambda.. In Lambda 2 pp. 211–250 Hendrix W., Roberts J.W., Stahl F.W., Weisberg R.A. Edited by Cold Spring Harbor, NY: Cold Spring Harbor Laboratory;
    [Google Scholar]
45. Yanisch-Perron C., Vieira J., Messing J. 1985; Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mpl8 and pUC19 vectors.. Gene 33:103–119
    [Google Scholar]