1887

Abstract

An insertion sequence (IS) of has been isolated and sequenced. This 1323 bp element, designated IS, is present in up to 18 copies in the genome and may be harboured in an extra-chromosomal element. It encodes a putative transposase of 415 amino acids which displays sequence homology to the IS family. Members of this class of elements have been described in the genus - for example IS is present in the complex, IS-IS in , and IS in these elements exhibit an 89%, 45% and 16% amino acid identity with IS, respectively. Investigation of the host range of IS by Southern blot analysis revealed additional IS-related repeated sequences in and . Moreover, IS represents a useful epidemiological tool for strain typing as it provides a diversity of restriction fragment length polymorphism patterns.

Loading

Article metrics loading...

/content/journal/micro/10.1099/00221287-142-9-2453
1996-09-01
2024-04-20
Loading full text...

Full text loading...

/deliver/fulltext/micro/142/9/mic-142-9-2453.html?itemId=/content/journal/micro/10.1099/00221287-142-9-2453&mimeType=html&fmt=ahah

References

  1. Altschul S. F., Gish W., Miller W., Myers E. W., Lipman D. J. 1990; Basic local alignment search tool. J Mol Biol 215:403–410
    [Google Scholar]
  2. Bercovier H., Kafri O., Sela S. 1985; Mycobacteria possess a surprisingly small number of ribosomal RN A genes in relation to the size of their genome. Biochem Biophys Res Commun 136:1136–1141
    [Google Scholar]
  3. Butler W. R., O’Connor S. P., Yakrus M. A., Smithwick R. W., Plikaytis B. B., Moss C. W., Floyd M. M., Woodley C. D., Kilburn J. O., Vadney F. S., Gross W. M. 1993; Mycobacterium celatum sp. nov. Int J Syst Bacteriol 43:539–548
    [Google Scholar]
  4. Collins D. M. 1994; DNA fingerprinting of Mycobacterium xenopi strains. Lett Appl Microbiol 18:234–235
    [Google Scholar]
  5. Collins D. M., Stephens D. M. 1991; Identification oi an insertion sequence, IS1081, in Mycobacterium bovis.. FEMS Microbiol Lett 83:11–16
    [Google Scholar]
  6. Collins D. M., Erasmuson S. K., Stephens D. M., Yates G. F., De Lisle G. W. 1993; DNA fingerprinting of Mycobacterium bovis strains by restriction fragment analysis and hybridization with insertion elements IS1081 and IS6110. J Clin Microbiol 31:1143–1147
    [Google Scholar]
  7. van Embden J. D. A., Cave M. D., Crawford J. T., Dale J. W., Eisenach K. D., Gicquel B., Hermans P. W. M., Martin G, MacAdam R., Shinnick T. M., Small P. M. 1992; Strain identification of Mycobacterium tuberculosis by DNA fingerprinting : recommendations for a standardized methodology. J Clin Microbiol 31:406–409
    [Google Scholar]
  8. Ferdows M. S., Serwer P., Griess G. A., Norris S. J., Barbour A. G. 1996; Conversion of a linear to a circular plasmid in the relapsing fever agent Borrelia bermsii.. J Bacteriol 178:793–800
    [Google Scholar]
  9. Fox G. E., Wisotzkey J. D., Jurtshuk P.Jr 1992; How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. Int J Syst Bacteriol 42:166–170
    [Google Scholar]
  10. Galas D. J., Chandler M. 1989; Bacterial insertion elements. In Mobile DNA pp. 109–162 Berg D. E., Howe M. M. Edited by Washington, DC: American Society for Microbiology;
    [Google Scholar]
  11. Guerrero G, Bernasconi C., Burki D., Bodmer T., Telenti A. 1995; A novel insertion element from Mycobacterium avium, IS1245, is a specific target for analysis of strain relatedness. J Clin Microbiol 33:304–307
    [Google Scholar]
  12. Guilhot G, Gicquel B., Davies J., Martin C. 1992; Isolation and analysis ot IS6120, a new insertion sequence from Mycobacterium smegmatis.. Mol Microbiol 6:107–113
    [Google Scholar]
  13. Hesselbarth J., Werckenthin C., Liebisch B., Schwarz S. 1995; Insertion elements in Staphylococcus intermedins.. Lett Appl Microbiol 20:180–183
    [Google Scholar]
  14. Kapur V., Ling L. L., Hamrick M. R., Plikaytis B. B., Shinnick T. M., Telenti A., Jacobs W. R.Jr Banerjee A., Cole S., Yuen K. Y., Clarridge J. E., Kreiswirth B. N., Musser J. M. 1995; Rapid Mycobacterium species assignment and unambiguous identification of mutations associated with antimicrobial resistance in Mycobacterium tuberculosis by automated DNA sequencing. Arch Pathol Lab Med 119:131–138
    [Google Scholar]
  15. MacAdam R. A., Guilhot C., Gicquel B. 1994; Transposition in mycobacteria. . In Tuberculosis: Pathogenesis, Protection,and Control pp 199–216 Bloom B. R. Edited by Washington, DC: American Society for Microbiology;
    [Google Scholar]
  16. Marks J., Schwabacher H. 1965; Infection due to Mycobacterium xenopi.. Br Med J 1:32
    [Google Scholar]
  17. Meissner P. M., Falkinham J. O.III 1986; Plasmid DNA profiles as epidemiological markers for clinical and environmental isolates of Mycobacterium avium, Mycobacterium intracellulare and Mycobacterium scrofulaceum.. J Infect Dis 153:325–331
    [Google Scholar]
  18. Pearson W. R., Lipman D. J. 1988; Improved tools for biological sequence comparison. Proc Natl Acad Sei USA 852444–2448
    [Google Scholar]
  19. Poulet S., Cole S. T. 1995; Repeated DNA sequences in mycobacteria. Arch Microbiol 163:79–86
    [Google Scholar]
  20. Rogall T., Wolters J., Flohr T., Böttger E. C. 1990; Towards a phylogeny and definition of species at the molecular level within the genus Mycobacterium.. Int J Syst Bacterial 40:323–330
    [Google Scholar]
  21. Roiz M. P., Palenque E., Guerrero C., Garcia M. J. 1995; Use of restriction fragment length polymorphism as a genetic marker for typing Mycobacterium avium strains. J Clin Microbiol 33:1389–1391
    [Google Scholar]
  22. Sambrook J., Fritsch E. F., Maniatis T. 1989 Molecular Cloning: a Laboratory Manual, 2nd edn.. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory;
    [Google Scholar]
  23. Sanger F., Nicklen S., Coulson A. R. 1977; DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 745463–5467
    [Google Scholar]
  24. Schwabacher H. 1959; A strain of mycobacterium isolated from skin lesions of a cold-blooded animal, Xenopus laevis, and its relation to atypical acid-fast bacilli occurring in man. J Hyg 57:57–67
    [Google Scholar]
  25. van Soolingen D., Hermans P. W. M., de Haas P. E. W., van Embden J. D. A. 1992; Insertion element IS108/-associated restriction fragment length polymorphisms in Mycobacterium tuberculosis complex species: a reliable tool for recognizing Mycobacterium bovis BCG. J Clin Microbiol 30:1772–1777
    [Google Scholar]
  26. van Soolingen D., de Haas P. E. W., Hermans P. W. M., Groenen P. M. A., van Embden J.D.A. 1993; Comparison of various repetitive DNA elements as genetic markers for strain differentiation and epidemiology of Mycobacterium tuberculosis.. J Clin Microbiol 31:1987–1995
    [Google Scholar]
  27. Thompson J. D., Higgins D. G., Gibson T. J. 1994; clustal w : improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–4680
    [Google Scholar]
  28. Tortoli E., Piersimoni G, Bacosi D., Bartoloni A., Betti F., Bono L., Burrini C., De Sio G., Lacchini G, Mantella A., Giulo Orsi P., Penati V., Tullia Simonetti M., Böttger E. C. 1995; Isolation of the newly described species Mycobacterium celatum from AIDS patients. J Clin Microbiol 33:137–140
    [Google Scholar]
  29. Wayne L. G., Good R.G, Böttger E. C., Butler R., Ezaki T., Gross W., Jonas-Taggart V., Kilburn J., Kirschner P., Krichevsky M. I., Ridell M., Shinnick T. M., Springer B., Stackebrandt E., Tarnok I., Tarnok Z. S., Tasaka H., Vincent V., Warren N. G. 1996; Semantide and chemotaxonomic based analyses of some problematic phenotypic clusters of slowly growing mycobacteria: a cooperative study of the International Working Group on Mycobacterial Taxonomy. Int J Syst Bacteriol 46:280–297
    [Google Scholar]
  30. Wayne L. G., Srarnek H. A. 1992; Agents of newly recognized or infrequently encountered mycobacterial diseases. Clin Microbiol Rev 5:1–25
    [Google Scholar]
  31. Wheatcroft R., Laberge S. 1991; Identification and nucleotide sequence of R hizobium meliloti insertion sequence ISRm3: similarity between the putative transposase encoded by ISRm3 and those encoded by Staphylococcus aureus IS256 and Thiobacillus ferroxidans IST2. J Bacterial 173:2530–2538
    [Google Scholar]
  32. Wolinsky E. 1979; Mycobacterial diseases other than tuberculosis. Clin Infect Dis 15:1–10
    [Google Scholar]
  33. Zolg J. W., Philippi-Schulz S. 1994; The superoxide dismutase gene, a target for detection and identification of mycobacteria by PCR. J Clin Microbiol 32:2801–2812
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/micro/10.1099/00221287-142-9-2453
Loading
/content/journal/micro/10.1099/00221287-142-9-2453
Loading

Data & Media loading...

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error