1887
Preview this article:

There is no abstract available.

  • This is an open-access article distributed under the terms of the Creative Commons Attribution License. This article was made open access via a Publish and Read agreement between the Microbiology Society and the corresponding author’s institution.
Loading

Article metrics loading...

/content/journal/mgen/10.1099/mgen.0.000900
2022-09-16
2024-04-19
Loading full text...

Full text loading...

/deliver/fulltext/mgen/8/9/mgen000900.html?itemId=/content/journal/mgen/10.1099/mgen.0.000900&mimeType=html&fmt=ahah

References

  1. Van Poelvoorde LAE, Bogaerts B, Fu Q, De Keersmaecker SCJ, Thomas I et al. Whole-genome-based phylogenomic analysis of the belgian 2016–2017 influenza A (h3n2) outbreak season allows improved surveillance. Microb Genom 2021; 7:000643 [View Article]
    [Google Scholar]
  2. Page AJ, Mather AE, Le-Viet T, Meader EJ, Alikhan N-F et al. Large-scale sequencing of SARS-CoV-2 genomes from one region allows detailed epidemiology and enables local outbreak management. Microb Genom 2021; 7:000589 [View Article]
    [Google Scholar]
  3. Chattaway MA, Gentle A, Nair S, Tingley L, Day M et al. Phylogenomics and antimicrobial resistance of salmonella typhi and paratyphi A, B and C in england, 2016–2019. Microb Genom 2021; 7:000633 [View Article]
    [Google Scholar]
  4. Pinto M, Borges V, Isidro J, Rodrigues JC, Vieira L et al. Neisseria gonorrhoeae clustering to reveal major European whole-genome-sequencing-based genogroups in association with antimicrobial resistance. Microb Genom 2021; 7:1–18 [View Article]
    [Google Scholar]
  5. Roberts LW, Forde BM, Hurst T, Ling W, Nimmo GR et al. Genomic surveillance, characterization and intervention of a polymicrobial multidrug-resistant outbreak in critical care. Microb Genom 2021; 7:000530 [View Article]
    [Google Scholar]
  6. Madon T, Hofman KJ, Kupfer L, Glass RI. Public health. Implementation science. Science 2007; 318:1728–1729 [View Article]
    [Google Scholar]
  7. Bogaerts B, Winand R, Van Braekel J, Hoffman S, Roosens NHC et al. Evaluation of WGS performance for bacterial pathogen characterization with the Illumina technology optimized for time-critical situations. Microb Genom 2021; 7:000699 [View Article]
    [Google Scholar]
  8. Ferreira FA, Helmersen K, Visnovska T, Jørgensen SB, Aamot HV. Rapid nanopore-based DNA sequencing protocol of antibiotic-resistant bacteria for use in surveillance and outbreak investigation. Microb Genom 2021; 7:000557 [View Article]
    [Google Scholar]
  9. Buytaers FE, Saltykova A, Mattheus W, Verhaegen B, Roosens NHC et al. Application of a strain-level shotgun metagenomics approach on food samples: resolution of the source of a Salmonella food-borne outbreak. Microb Genom 2021; 7:000547 [View Article]
    [Google Scholar]
  10. Doyle RM, O’Sullivan DM, Aller SD, Bruchmann S, Clark T et al. Discordant bioinformatic predictions of antimicrobial resistance from whole-genome sequencing data of bacterial isolates: an inter-laboratory study. Microb Genom 2021; 6:e000335 [View Article]
    [Google Scholar]
  11. Mitchell PK, Wang L, Stanhope BJ, Cronk BD, Anderson R et al. Multi-laboratory evaluation of the illumina iseq platform for whole genome sequencing of ssalmonella eescherichia coli and llisteria. Microb Genom 2022; 8:000717 [View Article]
    [Google Scholar]
  12. Coolen JPM, Jamin C, Savelkoul PHM, Rossen JWA, Wertheim HFL et al. Centre-specific bacterial pathogen typing affects infection-control decision making. Microb Genom 2021; 7:000612 [View Article]
    [Google Scholar]
  13. Jamin C, De Koster S, van Koeveringe S, De Coninck D, Mensaert K et al. Harmonization of whole-genome sequencing for outbreak surveillance of Enterobacteriaceae and Enterococci. Microb Genom 2021; 7:000567 [View Article]
    [Google Scholar]
  14. Bogaerts B, Nouws S, Verhaegen B, Denayer S, Van Braekel J et al. Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods. Microb Genom 2021; 7:000531 [View Article]
    [Google Scholar]
  15. Timme RE, Rand H, Sanchez Leon M, Hoffmann M, Strain E et al. GenomeTrakr proficiency testing for foodborne pathogen surveillance: an exercise from 2015. Microb Genom 2021; 4:e000185 [View Article]
    [Google Scholar]
  16. Ferdinand AS, Kelaher M, Lane CR, da Silva AG, Sherry NL et al. An implementation science approach to evaluating pathogen whole genome sequencing in public health. Genome Med 2021; 13:121 [View Article] [PubMed]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/mgen/10.1099/mgen.0.000900
Loading
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error