1887

Abstract

Multicellular creatures consist of a symbiosis between the host and its colonizing bacteria. The oral cavity may contain as many as 19 000 bacterial phylotypes, while each individual presents a proportion of these microbes. Infectogenomics studies the interaction between host genetic variations and composition of the microbiota. This review introduces the concept of periodontal infectogenomics, defined as the relationship between host genetic factors and the composition of the subgingival microbiota. In particular, the evidence for the effect of genetic variants in neutrophil and cytokine genes and the presence of periodontopathogenic bacteria will be discussed. The influence of genetic factors may affect clearance or persistence of pathogenic bacteria subgingivally, therefore increasing the risk for the development of common pathogenic conditions such as gingivitis and periodontitis, leading to early tooth loss. Mechanisms of interaction between genetic and microbiological factors and prospects for future studies will be discussed.

Loading

Article metrics loading...

/content/journal/jmm/10.1099/jmm.0.012021-0
2009-10-01
2024-04-16
Loading full text...

Full text loading...

/deliver/fulltext/jmm/58/10/1269.html?itemId=/content/journal/jmm/10.1099/jmm.0.012021-0&mimeType=html&fmt=ahah

References

  1. American Academy of Periodontology 2005; Epidemiology of periodontal diseases. J Periodontol 76:1406–1419 [CrossRef]
    [Google Scholar]
  2. Armitage G. C. 1999; Development of a classification system for periodontal diseases and conditions. Ann Periodontol 4:1–6 [CrossRef]
    [Google Scholar]
  3. Bellamy R. 2004 Susceptibility to Infectious Diseases: The Importance of Host Genetics Cambridge: Cambridge University Press;
    [Google Scholar]
  4. Bennermo M., Held C., Stemme S., Ericsson C. G., Silveira A., Green F., Tornvall P. 2004; Genetic predisposition of the interleukin-6 response to inflammation: implications for a variety of major diseases?. Clin Chem 50:2136–2140 [CrossRef]
    [Google Scholar]
  5. Campodónico V. L., Gadjeva M., Paradis-Bleau C., Uluer A., Pier G. B. 2008; Airway epithelial control of Pseudomonas aeruginosa infection in cystic fibrosis. Trends Mol Med 14:120–133 [CrossRef]
    [Google Scholar]
  6. Chapman J. M., Onnie C. M., Prescott N. J., Fisher S. A., Mansfield J. C., Mathew C. G., Lewis C. M., Verzilli C. J., Whittaker J. C. 2009; Searching for genotype-phenotype structure: using hierarchical log-linear models in Crohn disease. Am J Hum Genet 84:178–187 [CrossRef]
    [Google Scholar]
  7. Cooke G. S., Hill A. V. S. 2001; Genetics of susceptibility to human infectious disease. Nat Rev Genet 2:967–977 [CrossRef]
    [Google Scholar]
  8. Dalrymple S. A., Slattery R., Aud D. M., Krishna M., Lucian L. A., Murray R. 1996; Interleukin-6 is required for a protective immune response to systemic Escherichia coli infection. Infect Immun 64:3231–3235
    [Google Scholar]
  9. Duncan C. G., Leary R. J., Lin J. C., Cummins J., Di C., Schaefer C. F., Wang T. L., Riggins G. J., Edwards J. other authors 2009; Identification of microbial DNA in human cancer. BMC Med Genomics 2:22 [CrossRef]
    [Google Scholar]
  10. Fishman D., Faulds G., Jeffery R., Mohammed-Ali V., Humphries S., Woo P. 1998; The effect of novel polymorphisms in the interleukin-6 (IL-6) gene on IL-6 transcription and plasma IL-6 levels, and an association with systemic-onset juvenile chronic arthritis. J Clin Invest 102:1369–1376 [CrossRef]
    [Google Scholar]
  11. Frank D. N., Pace N. R. 2008; Gastrointestinal microbiology enters the metagenomics era. Curr Opin Gastroenterol 24:4–10 [CrossRef]
    [Google Scholar]
  12. Galvani A. P., Slatkin M. 2003; Evaluating plague and smallpox as historical selective pressures for the CCR5 32 HIV-resistance allele. Proc Natl Acad Sci U S A 100:15276–15279 [CrossRef]
    [Google Scholar]
  13. Gasche C., Nemeth M., Grundtner P., Willheim-Polli C., Ferenci P., Schwarzenbacher R. 2008; Evolution of Crohn's disease-associated Nod2 mutations. Immunogenetics 60:115–120 [CrossRef]
    [Google Scholar]
  14. Haffajee A. D., Socransky S. S. 1994; Microbial etiological agents of destructive periodontal diseases. Periodontol 2000; 5:78–111 [CrossRef]
    [Google Scholar]
  15. Haubek D., Poulsen K., Westergaard J., Dahlen G., Kilian M. 1996; Highly toxic clone of Actinobacillus actinomycetemcomitans in geographically widespread cases of juvenile periodontitis in adolescents of African origin. J Clin Microbiol 34:1576–1578
    [Google Scholar]
  16. Haubek D., Ennibi O. K., Poulsen K., Vaeth M., Poulsen S., Kilian M. 2008; Risk of aggressive periodontitis in adolescent carriers of the JP2 clone of Aggregatibacter ( Actinobacillus ) actinomycetemcomitans in Morocco: a prospective longitudinal cohort study. Lancet 371:237–242 [CrossRef]
    [Google Scholar]
  17. Henderson B., Nair S. P., Ward J. M., Wilson M. 2003; Molecular pathogenicity of the oral opportunistic pathogen Actinobacillus actinomycetemcomitans . Annu Rev Microbiol 57:29–55 [CrossRef]
    [Google Scholar]
  18. Henderson B., Seymour R. M., Curtis M. A., Donos N. 2009 Periodontal Medicine and Systems Biology Oxford: Wiley Blackwell;
    [Google Scholar]
  19. Kaplan J. B., Schreiner H. C., Furgang D., Fine D. H. 2002; Population structure and genetic diversity of Actinobacillus actinomycetemcomitans strains isolated from localized juvenile periodontitis patients. J Clin Microbiol 40:1181–1187 [CrossRef]
    [Google Scholar]
  20. Keijser B. J. F., Zaura E., Huse S. M., van der Vossen J. M. B. M., Schuren F. H. J., Montijn R. C., ten Cate J. M., Crielaard W. 2008; Pyrosequencing analysis of the oral microflora of healthy adults. J Dent Res 87:1016–1020 [CrossRef]
    [Google Scholar]
  21. Kellam P. 2006; Attacking pathogens through their hosts. Genome Biol 7:201 [CrossRef]
    [Google Scholar]
  22. Kellam P., Weiss R. A. 2006; Infectogenomics: insights from the host genome into infectious diseases. Cell 124:695–697 [CrossRef]
    [Google Scholar]
  23. Kinane D. F., Shiba H., Hart T. C. 2005; The genetic basis of periodontitis. Periodontol 2000; 39:91–117 [CrossRef]
    [Google Scholar]
  24. Kinane D. F., Shiba H., Stathopoulou P. G., Zhao H., Lappin D. F., Singh A., Eskan M. A., Beckers S., Waigel S. other authors 2006; Gingival epithelial cells heterozygous for Toll-like receptor 4 polymorphisms Asp299Gly and Thr399Ile are hypo-responsive to Porphyromonas gingivalis . Genes Immun 7:190–200 [CrossRef]
    [Google Scholar]
  25. Kornman K. S., Crane A., Wang H. Y., diGiovine F. S., Newman M. G., Pirk F. W., Wilson T. G., Higginbottom F. L., Duff G. W. 1997; The interleukin-1 genotype as a severity factor in adult periodontal disease. J Clin Periodontol 24:72–77 [CrossRef]
    [Google Scholar]
  26. Löe H., Theilade E., Jensen S. B. 1965; Experimental gingivitis in man. J Periodontol 36:177–187 [CrossRef]
    [Google Scholar]
  27. Loos B. G., John R. P., Laine M. L. 2005; Identification of genetic risk factors for periodontitis and possible mechanisms of action. J Clin Periodontol 32:159–179 [CrossRef]
    [Google Scholar]
  28. McFall-Ngai M., Henderson B., Ruby E. R. 2005 The Influence of Cooperative Bacteria on Animal Host Biology Cambridge: Cambridge University Press;
    [Google Scholar]
  29. Michalowicz B. S., Aeppli D., Virag J. G., Klump D. G., Hinrichs J. E., Segal N. L., Bouchard T. J., Pihlstrom B. L. 1991; Periodontal findings in adult twins. J Periodontol 62:293–299 [CrossRef]
    [Google Scholar]
  30. Neely A. L., Holford T. R., Loe H., Anerud A., Boysen H. 2001; The natural history of periodontal disease in man. Risk factors for progression of attachment loss in individuals receiving no oral health care. J Periodontol 72:1006–1015 [CrossRef]
    [Google Scholar]
  31. Nibali L., Ready D. R., Parkar M., Brett P. M., Wilson M., Tonetti M. S., Griffiths G. S. 2007; Gene polymorphisms and the prevalence of key periodontal pathogens. J Dent Res 86:416–420 [CrossRef]
    [Google Scholar]
  32. Nibali L., Tonetti M. S., Ready D. R., Parkar M., Brett P. M., Donos N., D'Aiuto F. 2008; Interleukin-6 polymorphisms are associated with pathogenic bacteria in periodontitis patients. J Periodontol 79:677–683 [CrossRef]
    [Google Scholar]
  33. Nibali L., D'Aiuto F., Donos N., Griffiths G. S., Parkar M., Tonetti M. S., Humphries S. E., Brett P. M. 2009; Association between periodontitis and common variants in the promoter of the interleukin-6 gene. Cytokine 45:50–54 [CrossRef]
    [Google Scholar]
  34. Nicu E. A., van der Velden U., Everts V., Van Winkelhoff A. J., Roos D., Loos B. G. 2007; Hyper-reactive PMNs in Fc gamma RIIa 131 H/H genotype periodontitis patients. J Clin Periodontol 34:938–945 [CrossRef]
    [Google Scholar]
  35. Niller H. H., Wolf H., Minarovits J. 2009; Epigenetic dysregulation of the host cell genome in Epstein-Barr virus-associated neoplasia. Semin Cancer Biol 19:158–164 [CrossRef]
    [Google Scholar]
  36. Page R. C., Offenbacher S., Schroeder H. E., Seymour G. J., Kornman K. S. 1997; Advances in the pathogenesis of periodontitis: summary of developments, clinical implications and future directions. Periodontol 2000; 14:216–248 [CrossRef]
    [Google Scholar]
  37. Papapanou P. N. 1999; Epidemiology of periodontal diseases: an update. J Int Acad Periodontol 1:110–116
    [Google Scholar]
  38. Rylev M., Kilian M. 2008; Prevalence and distribution of principal periodontal pathogens worldwide. J Clin Periodontol 35:346–361
    [Google Scholar]
  39. Socransky S. S., Haffajee A. D. 1991; Microbial mechanisms in the pathogenesis of destructive periodontal diseases: a critical assessment. J Periodontal Res 26:195–212 [CrossRef]
    [Google Scholar]
  40. Socransky S. S., Haffajee A. D. 2008; Periodontal infections. In Clinical Periodontology and Implant Dentistry , 5th edn. pp 207–267 Edited by Lindhe J., Karring T., Lang N. Oxford: Blackwell Munksgaard;
    [Google Scholar]
  41. Socransky S. S., Haffajee A. D., Smith C., Duff G. W. 2000; Microbiological parameters associated with IL-1 gene polymorphisms in periodontitis patients. J Clin Periodontol 27:810–818 [CrossRef]
    [Google Scholar]
  42. Trevilatto P. C., Scarel-Caminaga R. M., de Brito R. B., de Souza A. P., Line S. R. P. 2003; Polymorphism at position −174 of IL-6 gene is associated with susceptibility to chronic periodontitis in a Caucasian Brazilian population. J Clin Periodontol 30:438–442 [CrossRef]
    [Google Scholar]
  43. Trombelli L., Tatakis D. N., Scapoli C., Bottega S., Orlandini E., Tosi M. 2004; Modulation of clinical expression of plaque-induced gingivitis. II. Identification of ‘high-responder’ and ‘low-responder’ subjects. J Clin Periodontol 31:239–252 [CrossRef]
    [Google Scholar]
  44. van Opijnen T., Berkhout B. 2005; The host environment drives HIV-1 fitness. Rev Med Virol 15:219–233 [CrossRef]
    [Google Scholar]
  45. van Sorge N. M., van der Pol W. L., van de Winkel J. G. J. 2003; Fc γ R polymorphisms: implications for function, disease susceptibility and immunotherapy. Tissue Antigens 61:189–202 [CrossRef]
    [Google Scholar]
  46. Wang J. E. 2005; Can single nucleotide polymorphisms in innate immune receptors predict development of septic complications in intensive care unit patients?. Crit Care Med 33:695–696 [CrossRef]
    [Google Scholar]
  47. Wessler S., Backert S. 2008; Molecular mechanisms of epithelial-barrier disruption by Helicobacter pylori . Trends Microbiol 16:397–405 [CrossRef]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/jmm/10.1099/jmm.0.012021-0
Loading
/content/journal/jmm/10.1099/jmm.0.012021-0
Loading

Data & Media loading...

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error