1887

Abstract

Colistin resistance testing methods such as broth microdilution (BMD) are time-consuming and labour intensive for clinical laboratories. MBT Lipid Xtract Kit on MALDI Biotyper Sirius System (Bruker, Billerica, MA, USA) utilizes lipidomic analysis to identify specific cell wall modifications associated with colistin resistance. We compared MBT to BMD (ComASP Colistin, Liofilchem) across 36 Gram-negative isolates (non-resistant MIC ≤2 µg ml, resistant MIC ≥4 µg ml). All samples were tested twice on MBT with discrepant results repeated before assessing categorical agreement between MBT and BMD. 44.4% (16/36) of isolates were colistin resistant via BMD. MBT Lipid Xtract had 80.6% agreement (29/36) with BMD, with 5/7 discrepancies corrected to match upon repeat testing. There was 100% agreement for isolates (=16). The whole-genome sequencing was completed on the two discrepant isolates, with variants within colistin resistance-associated loci identified (MIC 0.5 µg ml: S30T, T246A, N212T, S253G, Q287K and MIC >16 µg ml: S30T, R90insRN, T246A, E57G, S253G). Further evaluation, particularly for non-, of MBT is required prior to implementation in clinical laboratories.

  • This is an open-access article distributed under the terms of the Creative Commons Attribution License. This article was made open access via a Publish and Read agreement between the Microbiology Society and the corresponding author’s institution.
Loading

Article metrics loading...

/content/journal/jmm/10.1099/jmm.0.001881
2024-09-02
2024-09-14
Loading full text...

Full text loading...

/deliver/fulltext/jmm/73/9/jmm001881.html?itemId=/content/journal/jmm/10.1099/jmm.0.001881&mimeType=html&fmt=ahah

References

  1. Bonomo RA, Burd EM, Conly J, Limbago BM, Poirel L et al. Carbapenemase-producing organisms: a global scourge. Clin Infect Dis 2018; 66:1290–1297 [View Article] [PubMed]
    [Google Scholar]
  2. Canadian Nosocomial Infection Surveillance Program Healthcare-associated infections and antimicrobial resistance in Canadian acute care hospitals, 2016-2020. Can Commun Dis Rep 2022; 48:308–324 [View Article] [PubMed]
    [Google Scholar]
  3. Tamma PD, Aitken SL, Bonomo RA, Mathers AJ, van Duin D et al. Infectious Diseases Society of America 2023 guidance on the treatment of antimicrobial resistant gram-negative infections. Clin Infect Dis 2023ciad428 [View Article] [PubMed]
    [Google Scholar]
  4. Gogry FA, Siddiqui MT, Sultan I, Haq QMR. Current update on intrinsic and acquired colistin resistance mechanisms in bacteria. Front Med 2021; 8:677720 [View Article]
    [Google Scholar]
  5. Wang R, van Dorp L, Shaw LP, Bradley P, Wang Q et al. The global distribution and spread of the mobilized colistin resistance gene mcr-1. Nat Commun 2018; 9:1179 [View Article]
    [Google Scholar]
  6. Walkty A, Karlowsky JA, Adam HJ, Lagacé-Wiens P, Baxter M et al. Frequency of MCR-1-mediated colistin resistance among Escherichia coli clinical isolates obtained from patients in Canadian hospitals (CANWARD 2008-2015). CMAJ Open 2016; 4:E641–E645 [View Article] [PubMed]
    [Google Scholar]
  7. CLSI Performance Standards for Antimicrobial Susceptibility Testing, 33rd edn Wayne, PA: Clinical and Laboratory Standards Institute; 2023
    [Google Scholar]
  8. Mitton B, Kingsburgh C, Kock MM, Mbelle NM, Strydom K. Evaluation of an in-house colistin NP test for use in resource-limited settings. J Clin Microbiol 2019; 57:e00501-19 [View Article] [PubMed]
    [Google Scholar]
  9. Lo-Ten-Foe JR, de Smet A, Diederen BMW, Kluytmans J, van Keulen PHJ. Comparative evaluation of the VITEK 2, disk diffusion, Etest, broth microdilution, and agar dilution susceptibility testing methods for colistin in clinical isolates, including heteroresistant Enterobacter cloacae and Acinetobacter baumannii strains. Antimicrob Agents Chemother 2007; 51:3726–3730 [View Article] [PubMed]
    [Google Scholar]
  10. Matuschek E, Åhman J, Webster C, Kahlmeter G. Antimicrobial susceptibility testing of colistin - evaluation of seven commercial MIC products against standard broth microdilution for Escherichia coli, Klebsiella pneumoniae, Pseudomonas aeruginosa, and Acinetobacter spp. Clin Microbiol Infect 2018; 24:865–870 [View Article] [PubMed]
    [Google Scholar]
  11. Chew KL, La M-V, Lin RTP, Teo JWP. Colistin and polymyxin B susceptibility testing for carbapenem-resistant and mcr-positive Enterobacteriaceae: comparison of sensititre, MicroScan, Vitek 2, and Etest with broth microdilution. J Clin Microbiol 2017; 55:2609–2616 [View Article] [PubMed]
    [Google Scholar]
  12. Smith RD, McElheny CL, Izac JR, Gardner FM, Chandler CE et al. A novel lipid-based MALDI-TOF assay for the rapid detection of colistin-resistant Enterobacter species. Microbiol Spectr 2022; 10:e0144521 [View Article]
    [Google Scholar]
  13. Furniss RCD, Kostrzewa M, Mavridou DAI, Larrouy-Maumus G. The clue is in the lipid A: rapid detection of colistin resistance. PLOS Pathog 2020; 16:e1008331 [View Article] [PubMed]
    [Google Scholar]
  14. Fan J, Huang S, Chorlton SD. BugSeq: a highly accurate cloud platform for long-read metagenomic analyses. BMC Bioinform 2021; 22:160 [View Article] [PubMed]
    [Google Scholar]
  15. Patel R. Matrix-assisted laser desorption ionization-time of flight mass spectrometry in clinical microbiology. Clin Infect Dis 2013; 57:564–572 [View Article] [PubMed]
    [Google Scholar]
  16. El-Sayed Ahmed MAE-G, Zhong L-L, Shen C, Yang Y, Doi Y et al. Colistin and its role in the era of antibiotic resistance: an extended review (2000-2019). Emerg Microbes Infect 2020; 9:868–885 [View Article] [PubMed]
    [Google Scholar]
  17. Larrouy-Maumus G, Dortet L, Nix ID, Maier T, Oberheitmann B et al. Two-site study on performances of a commercially available MALDI-TOF MS-based assay for the detection of colistin resistance in Escherichia coli. Eur J Clin Microbiol Infect Dis 2023; 42:669–679 [View Article] [PubMed]
    [Google Scholar]
  18. Sorensen M, Chandler CE, Gardner FM, Ramadan S, Khot PD et al. Rapid microbial identification and colistin resistance detection via MALDI-TOF MS using a novel on-target extraction of membrane lipids. Sci Rep 2020; 10:21536 [View Article] [PubMed]
    [Google Scholar]
  19. Berinson B, Both A, Berneking L, Christner M, Lütgehetmann M et al. Usefulness of BioFire Filmarray BCID2 for blood culture processing in clinical practice. J Clin Microbiol 2021; 59:e0054321 [View Article] [PubMed]
    [Google Scholar]
  20. Payne M, Croxen MA, Lee TD, Mayson B, Champagne S et al. mcr-1-positive colistin-resistant Escherichia coli in traveler returning to Canada from China. Emerg Infect Dis 2016; 22:1673–1675 [View Article] [PubMed]
    [Google Scholar]
  21. Ling Z, Yin W, Shen Z, Wang Y, Shen J et al. Epidemiology of mobile colistin resistance genes mcr-1 to mcr-9. J Antimicrob Chemother 2020; 75:3087–3095 [View Article] [PubMed]
    [Google Scholar]
  22. Wang C, Feng Y, Liu L, Wei L, Kang M et al. Identification of novel mobile colistin resistance gene mcr-10. Emerg Microbes Infect 2020; 9:508–516 [View Article] [PubMed]
    [Google Scholar]
  23. Torres DA, Seth-Smith HMB, Joosse N, Lang C, Dubuis O et al. Colistin resistance in Gram-negative bacteria analysed by five phenotypic assays and inference of the underlying genomic mechanisms. BMC Microbiol 2021; 21:321 [View Article] [PubMed]
    [Google Scholar]
  24. Conceição-Neto OC, da Costa BS, Pontes L da S, Silveira MC, Justo-da-Silva LH et al. Polymyxin resistance in clinical isolates of K. pneumoniae in Brazil: update on molecular mechanisms, clonal dissemination and relationship with KPC-producing strains. Front Cell Infect Microbiol 2022; 12:898125 [View Article] [PubMed]
    [Google Scholar]
  25. Olsson A, Malmberg C, Zhao C, Friberg LE, Nielsen EI et al. Synergy of polymyxin B and minocycline against KPC-3- and OXA-48-producing Klebsiella pneumoniae in dynamic time-kill experiments: agreement with in silico predictions. J Antimicrob Chemother 2024; 79:391–402 [View Article] [PubMed]
    [Google Scholar]
/content/journal/jmm/10.1099/jmm.0.001881
Loading
/content/journal/jmm/10.1099/jmm.0.001881
Loading

Data & Media loading...

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error