Skip to content
1887

Abstract

In 2020 and 2022, nine cases of surgical site infections with a methicillin-resistant (MRSA) were diagnosed in horses in an equine referral clinic. Sixteen isolates (horses, =9; environment, =3; and staff members, =4) were analysed retrospectively using Nanopore whole-genome sequencing to investigate the relatedness of two suspected MRSA outbreaks (2020 and 2022). The MRSA isolates belonged to ST398 and ST612. ST398 genomes from 2020 and 2022 formed three phylogenetic clusters. The first ST398 cluster from 2020 consisted of isolates from five horses and one staff member, and we suspected within clinic transmission. The second cluster of ST398 isolates from 2022 originated from two horses and two staff members but showed higher single nucleotide polymorphism (SNP) distances. One ST398 isolate from an individual staff member was not related to the other two clusters. The ST612 isolates were isolated in 2022 from two horses and three environmental samples and showed very low SNP distances (7 SNPs), indicating the transmission of MRSA ST612 in this clinic in 2022. Molecular characterization revealed an abundant set of virulence genes and plasmids in the ST612 isolates in comparison to ST398 isolates. Phenotypic antimicrobial susceptibility showed that differences between the two sequence types were consistent with the genetic characteristics. MRSA ST612 has not been reported in Europe before, but it is a dominant clone in African hospitals and has been described in horses and people working with horses in Australia, indicating the importance of surveillance.

  • This is an open-access article distributed under the terms of the Creative Commons Attribution License. This article was made open access via a Publish and Read agreement between the Microbiology Society and the corresponding author’s institution.
Loading

Article metrics loading...

/content/journal/jmm/10.1099/jmm.0.001873
2024-08-29
2025-07-10
Loading full text...

Full text loading...

/deliver/fulltext/jmm/73/8/jmm001873.html?itemId=/content/journal/jmm/10.1099/jmm.0.001873&mimeType=html&fmt=ahah

References

  1. Muntean MM, Muntean A-A, Preda M, Manolescu LSC, Dragomirescu C et al. Phenotypic and genotypic detection methods for antimicrobial resistance in ESKAPE pathogens (Review). Exp Ther Med 2022; 24:508 [View Article] [PubMed]
    [Google Scholar]
  2. Van den Eede A, Martens A, Floré K, Denis O, Gasthuys F et al. MRSA carriage in the equine community: an investigation of horse-caretaker couples. Vet Microbiol 2013; 163:313–318 [View Article] [PubMed]
    [Google Scholar]
  3. Little SV, Hillhouse AE, Lawhon SD, Bryan LK. Analysis of virulence and antimicrobial resistance gene carriage in Staphylococcus aureus infections in equids using whole-genome sequencing. mSphere 2021; 6:e0019620 [View Article] [PubMed]
    [Google Scholar]
  4. Murphy RJT, Ramsay JP, Lee YT, Pang S, O’Dea MA et al. Multiple introductions of methicillin-resistant Staphylococcus aureus ST612 into Western Australia associated both with human and equine reservoirs. Int J Antimicrob Agents 2019; 54:681–685 [View Article] [PubMed]
    [Google Scholar]
  5. Wagenaar JA, Yue H, Pritchard J, Broekhuizen-Stins M, Huijsdens X et al. Unexpected sequence types in livestock associated methicillin-resistant Staphylococcus aureus (MRSA): MRSA ST9 and a single locus variant of ST9 in pig farming in China. Vet Microbiol 2009; 139:405–409 [View Article] [PubMed]
    [Google Scholar]
  6. van Duijkeren E, Moleman M, Sloet van Oldruitenborgh-Oosterbaan MM, Multem J, Troelstra A et al. Methicillin-resistant Staphylococcus aureus in horses and horse personnel: an investigation of several outbreaks. Vet Microbiol 2010; 141:96–102 [View Article] [PubMed]
    [Google Scholar]
  7. Jordan D, Simon J, Fury S, Moss S, Giffard P et al. Carriage of methicillin-resistant Staphylococcus aureus by veterinarians in Australia. Aust Vet J 2011; 89:152–159 [View Article] [PubMed]
    [Google Scholar]
  8. Cuny C, Abdelbary MMH, Köck R, Layer F, Scheidemann W et al. Methicillin-resistant Staphylococcus aureus from infections in horses in Germany are frequent colonizers of veterinarians but rare among MRSA from infections in humans. One Health 2016; 2:11–17 [View Article] [PubMed]
    [Google Scholar]
  9. Francois P, Pittet D, Bento M, Pepey B, Vaudaux P et al. Rapid detection of methicillin-resistant Staphylococcus aureus directly from sterile or nonsterile clinical samples by a new molecular assay. J Clin Microbiol 2003; 41:254–260 [View Article] [PubMed]
    [Google Scholar]
  10. CLSI VET015. In CLSI VET01STM Performance Standards for Antimicrobial Disk and Dilution Susceptibility Tests for Bacteria Isolated From Animals A CLSI Supplement for Global Application, 7th edn. 2023 www.clsi.org
    [Google Scholar]
  11. Kolmogorov M, Yuan J, Lin Y, Pevzner PA. Assembly of long, error-prone reads using repeat graphs. Nat Biotechnol 2019; 37:540–546 [View Article] [PubMed]
    [Google Scholar]
  12. Treangen TJ, Ondov BD, Koren S, Phillippy AM. The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes. Genome Biol 2014; 15:524 [View Article] [PubMed]
    [Google Scholar]
  13. Croucher NJ, Page AJ, Connor TR, Delaney AJ, Keane JA et al. Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins. Nucleic Acids Res 2015; 43:e15 [View Article] [PubMed]
    [Google Scholar]
  14. Zhou Z, Alikhan N-F, Sergeant MJ, Luhmann N, Vaz C et al. Grapetree: visualization of core genomic relationships among 100,000 bacterial pathogens. Genome Res 2018; 28:1395–1404 [View Article] [PubMed]
    [Google Scholar]
  15. Larsen MV, Cosentino S, Rasmussen S, Friis C, Hasman H et al. Multilocus sequence typing of total-genome-sequenced bacteria. J Clin Microbiol 2012; 50:1355–1361 [View Article] [PubMed]
    [Google Scholar]
  16. Kaya H, Hasman H, Larsen J, Stegger M, Johannesen TB et al. SCC mec finder, a web-based tool for typing of Staphylococcal cassette chromosomemecin Staphylococcus aureus using whole-genome sequence data. mSphere 2018; 3: [View Article]
    [Google Scholar]
  17. Fernandez JE, Egli A, Overesch G, Perreten V. Time-calibrated phylogenetic and chromosomal mobilome analyses of Staphylococcus aureus CC398 reveal geographical and host-related evolution. Nat Commun 2024; 15:5526 [View Article] [PubMed]
    [Google Scholar]
  18. Benson MA, Ohneck EA, Ryan C, Alonzo F 3rd, Smith H et al. Evolution of hypervirulence by a MRSA clone through acquisition of a transposable element. Mol Microbiol 2014; 93:664–681 [View Article] [PubMed]
    [Google Scholar]
  19. Wendlandt S, Kadlec K, Feßler AT, van Duijkeren E, Schwarz S. Two different erm(C)-carrying plasmids in the same methicillin-resistant Staphylococcus aureus CC398 isolate from a broiler farm. Vet Microbiol 2014; 171:382–387 [View Article] [PubMed]
    [Google Scholar]
  20. Bortolami A, Williams NJ, McGowan CM, Kelly PG, Archer DC et al. Environmental surveillance identifies multiple introductions of MRSA CC398 in an Equine Veterinary Hospital in the UK, 2011-2016. Sci Rep 2017; 7:5499 [View Article] [PubMed]
    [Google Scholar]
  21. Cuny C, Witte W. MRSA in equine hospitals and its significance for infections in humans. Vet Microbiol 2017; 200:59–64 [View Article] [PubMed]
    [Google Scholar]
  22. Abdulgader SM, Shittu AO, Nicol MP, Kaba M. Molecular epidemiology of methicillin-resistant Staphylococcus aureus in Africa: a systematic review. Front Microbiol 2015; 6:348 [View Article] [PubMed]
    [Google Scholar]
  23. Lakhundi S, Zhang K. Methicillin-resistant Staphylococcus aureus: molecular characterization, evolution, and epidemiology. Clin Microbiol Rev 2018; 31:e00020-18 [View Article] [PubMed]
    [Google Scholar]
  24. Laabei M, Uhlemann A-C, Lowy FD, Austin ED, Yokoyama M et al. Evolutionary trade-offs underlie the multi-faceted virulence of Staphylococcus aureus. PLoS Biol 2015; 13:e1002229 [View Article] [PubMed]
    [Google Scholar]
  25. Gooskens J, Konstantinovski MM, Kraakman MEM, Kalpoe JS, van Burgel ND et al. Panton-valentine leukocidin-positive CC398 MRSA in urban clinical settings, the Netherlands. Emerg Infect Dis 2023; 29:1055–1057 [View Article] [PubMed]
    [Google Scholar]
  26. Groves MD, Crouch B, Coombs GW, Jordan D, Pang S et al. Molecular epidemiology of methicillin-resistant Staphylococcus aureus isolated from Australian veterinarians. PLoS One 2016; 11:e0146034 [View Article] [PubMed]
    [Google Scholar]
  27. Gill JL, Hedge J, Wilson DJ, MacLean RC. Evolutionary processes driving the rise and fall of Staphylococcus aureus ST239, a dominant hybrid pathogen. mBio 2021; 12:e0216821 [View Article] [PubMed]
    [Google Scholar]
/content/journal/jmm/10.1099/jmm.0.001873
Loading
/content/journal/jmm/10.1099/jmm.0.001873
Loading

Data & Media loading...

Supplements

Supplementary material 1

EXCEL
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error