Genomic diversity of human adenovirus type 3 isolated in Fukui, Japan over a 24-year period Free

Abstract

Recently, human adenovirus type 3 (HAdV-3) has become the most isolated HAdV worldwide. Restriction endonuclease analysis of globally isolated strains of HAdV-3 has uncovered 51 genome types to date. Information on the genome type is important to the epidemiological study of HAdV-3. In this study, analysis of 75 isolates of HAdV- 3 collected over a 24-year period in Fukui revealed: (1) the emergence of three novel genome types (HAdV-3a52, HAdV-3a53 and HAdV-3a54) and two known genome types (HAdV-3a and HAdV-3a54); (2) the spectrum of diseases caused by individual genome types and their major involvement in the paediatric age population; and (3) the co-circulation and replacement of genome types as a usual phenomenon. The rising number of HAdV-3 genome types indicates that the genetic variation of HAdV-3 is more than other HAdVs. Considering the clinical importance of HAdV-3 infection, its genetic diversity underscores the need for its continuous surveillance and genetic characterization.

Loading

Article metrics loading...

/content/journal/jmm/10.1099/jmm.0.000625
2017-11-01
2024-03-19
Loading full text...

Full text loading...

/deliver/fulltext/jmm/66/11/1616.html?itemId=/content/journal/jmm/10.1099/jmm.0.000625&mimeType=html&fmt=ahah

References

  1. Banik U, Adhikary AK, Suzuki E, Inada T, Okabe N. Multiplex PCR assay for rapid identification of oculopathogenic adenoviruses by amplification of the fiber and hexon genes. J Clin Microbiol 2005; 43:1064–1068 [View Article][PubMed]
    [Google Scholar]
  2. Harley D, Harrower B, Lyon M, Dick A. A primary school outbreak of pharyngoconjunctival fever caused by adenovirus type 3. Commun Dis Intell 2001; 25:9–12[PubMed]
    [Google Scholar]
  3. Okamoto K, Fukuda M, Shigemi R, Takaoka T. Two cases of acute encephalitis/encephalopathy associated with adenovirus type 3 infection. No To Hattatsu 2004; 36:487–491[PubMed]
    [Google Scholar]
  4. Lin YC, Lu PL, Lin KH, Chu PY, Wang CF et al. Molecular epidemiology and phylogenetic analysis of human adenovirus caused an outbreak in Taiwan during 2011. PLoS One 2015; 10:e0127377 [View Article][PubMed]
    [Google Scholar]
  5. Schmitz H, Wigand R, Heinrich W. Worldwide epidemiology of human adenovirus infections. Am J Epidemiol 1983; 117:455–466[PubMed] [Crossref]
    [Google Scholar]
  6. Barker JH, Luby JP, Sean Dalley A, Bartek WM, Burns DK et al. Fatal type 3 adenoviral pneumonia in immunocompetent adult identical twins. Clin Infect Dis 2003; 37:e142-6 [View Article][PubMed]
    [Google Scholar]
  7. Chany C, Lepine P, Lelong M, Le TV, Satge P et al. Severe and fatal pneumonia in infants and young children associated with adenovirus infections. Am J Hyg 1958; 67:367–378[PubMed]
    [Google Scholar]
  8. Fu WY, Liang D, Zheng YC, Liu WM, Xu Z et al. A study of molecular epidemiology of adenovirus of types 3 and 7 on infant pneumonia in northern China. Chin Med J 1989; 102:857–861[PubMed]
    [Google Scholar]
  9. Gray GC, Callahan JD, Hawksworth AW, Fisher CA, Gaydos JC. Respiratory diseases among U.S. military personnel: countering emerging threats. Emerg Infect Dis 1999; 5:379–385 [View Article][PubMed]
    [Google Scholar]
  10. Herbert FA, Wilkinson D, Burchak E, Morgante O. Adenovirus type 3 pneumonia causing lung damage in childhood. Can Med Assoc J 1977; 116:274–276[PubMed]
    [Google Scholar]
  11. Kajon AE, Murtagh P, Garcia Franco S, Freire MC, Weissenbacher MC et al. A new genome type of adenovirus 3 associated with severe lower acute respiratory infection in children. J Med Virol 1990; 30:73–76 [View Article][PubMed]
    [Google Scholar]
  12. Lai CY, Lee CJ, Lu CY, Lee PI, Shao PL et al. Adenovirus serotype 3 and 7 infection with acute respiratory failure in children in Taiwan, 20102011. PLoS One 2013; 8:e53614 [View Article][PubMed]
    [Google Scholar]
  13. Pingleton SK, Pingleton WW, Hill RH, Dixon A, Sobonya RE et al. Type 3 adenoviral pneumonia occurring in a respiratory intensive care unit. Chest 1978; 73:554–555 [View Article][PubMed]
    [Google Scholar]
  14. Rebelo-de-Andrade H, Pereira C, Gíria M, Prudêncio E, Brito MJ et al. Outbreak of acute respiratory infection among infants in Lisbon, Portugal, caused by human adenovirus serotype 3 and a new 7/3 recombinant strain. J Clin Microbiol 2010; 48:1391–1396 [View Article][PubMed]
    [Google Scholar]
  15. Ryan M, Gray G, Hawksworth A, Malasig M, Hudspeth M et al. The naval health research center respiratory disease laboratory. Mil Med 2000; 165:32–34[PubMed]
    [Google Scholar]
  16. Abbas KZ, Lombos E, Duvvuri VR, Olsha R, Higgins RR et al. Temporal changes in respiratory adenovirus serotypes circulating in the greater Toronto area, Ontario, during December 2008 to April 2010. Virol J 2013; 10:15 [View Article][PubMed]
    [Google Scholar]
  17. Chang SY, Lee CN, Lin PH, Huang HH, Chang LY et al. A community-derived outbreak of adenovirus type 3 in children in Taiwan between 2004 and 2005. J Med Virol 2008; 80:102–112 [View Article][PubMed]
    [Google Scholar]
  18. Chen M, Zhu Z, Huang F, Liu D, Zhang T et al. Adenoviruses associated with acute respiratory diseases reported in Beijing from 2011 to 2013. PLoS One 2015; 10:e0121375 [View Article][PubMed]
    [Google Scholar]
  19. Chen Y, Liu F, Wang C, Zhao M, Deng L et al. Molecular identification and epidemiological features of human adenoviruses associated with acute respiratory infections in hospitalized children in southern China, 20122013. PLoS One 2016; 11:e0155412 [View Article][PubMed]
    [Google Scholar]
  20. Demian PN, Horton KC, Kajon A, Siam R, Hasanin AM et al. Molecular identification of adenoviruses associated with respiratory infection in Egypt from 2003 to 2010. BMC Infect Dis 2014; 14:50 [View Article][PubMed]
    [Google Scholar]
  21. Girouard G, Garceau R, Thibault L, Bourque C, Bastien N et al. Province-wide adenovirus type 3 outbreak with severe cases in New Brunswick. Can J Infect Dis Med Microbiol 2011; 22:e4–6 [View Article][PubMed]
    [Google Scholar]
  22. Homaira N, Luby SP, Hossain K, Islam K, Ahmed M et al. Respiratory viruses associated hospitalization among children aged <5 years in Bangladesh: 20102014. PLoS One 2016; 11:e0147982 [View Article][PubMed]
    [Google Scholar]
  23. Jin Y, Zhang RF, Xie ZP, Yan KL, Gao HC et al. Prevalence of adenovirus in children with acute respiratory tract infection in Lanzhou, China. Virol J 2013; 10:271 [View Article][PubMed]
    [Google Scholar]
  24. Lee J, Choi EH, Lee HJ. Comprehensive serotyping and epidemiology of human adenovirus isolated from the respiratory tract of Korean children over 17 consecutive years (19912007). J Med Virol 2010; 82:624–631 [View Article][PubMed]
    [Google Scholar]
  25. Rojas LJ, Jaramillo CA, Mojica MF, Escalante MP, Delgado P. Molecular typing of adenovirus circulating in a Colombian paediatric population with acute respiratory infection. Epidemiol Infect 2012; 140:818–822 [View Article][PubMed]
    [Google Scholar]
  26. Li QG, Wadell G. Comparison of 17 genome types of adenovirus type 3 identified among strains recovered from six continents. J Clin Microbiol 1988; 26:1009–1015[PubMed]
    [Google Scholar]
  27. Adrian T, Best B, Hierholzer JC, Wigand R. Molecular epidemiology and restriction site mapping of adenovirus type 3 genome types. J Clin Microbiol 1989; 27:1329–1334 [View Article][PubMed]
    [Google Scholar]
  28. Lebeck MG, Mccarthy TA, Capuano AW, Schnurr DP, Landry ML et al. Emergent US adenovirus 3 strains associated with an epidemic and serious disease. J Clin Virol 2009; 46:331–336 [View Article][PubMed]
    [Google Scholar]
  29. Landry ML, Lebeck MG, Capuano AW, Mccarthy T, Gray GC. Adenovirus type 3 outbreak in connecticut associated with a novel variant. J Med Virol 2009; 81:1380–1384 [View Article][PubMed]
    [Google Scholar]
  30. Kim YJ, Hong JY, Lee HJ, Shin SH, Kim YK et al. Genome type analysis of adenovirus types 3 and 7 isolated during successive outbreaks of lower respiratory tract infections in children. J Clin Microbiol 2003; 41:4594–4599 [View Article][PubMed]
    [Google Scholar]
  31. Itoh N, Tanaka K, Aoki K, Hinokuma R, Nakagawa H et al. Four new genotypes of adenovirus type 3 isolated from patients with conjunctivitis in Japan. J Med Virol 1999; 59:73–77 [View Article][PubMed]
    [Google Scholar]
  32. Kajon AE, Mistchenko AS, Videla C, Hortal M, Wadell G et al. Molecular epidemiology of adenovirus acute lower respiratory infections of children in the south cone of South America (19911994). J Med Virol 1996; 48:151–156 [View Article][PubMed]
    [Google Scholar]
  33. Tveten Y, Ahlquist J, Krogvold L, Bruu AL, Størvold G et al. Restriction endonuclease analysis of adenovirus type 3 isolated in Norway from 1970 to 1991. APMIS 1994; 102:215–218 [View Article][PubMed]
    [Google Scholar]
  34. Arens M, Dilworth V. Remarkably homogeneous population of adenovirus type 3 and 7 genome types. J Clin Microbiol 1988; 26:1604–1608[PubMed]
    [Google Scholar]
  35. Bailey AS, Richmond SJ. Genetic heterogeneity of recent isolates of adenovirus types 3, 4, and 7. J Clin Microbiol 1986; 24:30–35[PubMed]
    [Google Scholar]
  36. Golovina GI, Zolotaryov FN, Yurlova TI. Sensitive analysis of genetic heterogeneity of adenovirus types 3 and 7 in the Soviet Union. J Clin Microbiol 1991; 29:2313–2321[PubMed]
    [Google Scholar]
  37. Guo DF, Shibata R, Shinagawa M, Sato G, Aoki K et al. Genomic comparison of adenovirus type 3 isolates from patients with acute conjunctivitis in Japan, Australia, and the Philippines. Microbiol Immunol 1988; 32:833–842 [View Article][PubMed]
    [Google Scholar]
  38. Adhikary AK, Hanaoka N, Fujimoto T. Simple and cost-effective restriction endonuclease analysis of human adenoviruses. Biomed Res Int 2014; 2014:1–6 [View Article][PubMed]
    [Google Scholar]
  39. Li QG, Zheng QJ, Liu YH, Wadell G. Molecular epidemiology of adenovirus types 3 and 7 isolated from children with pneumonia in Beijing. J Med Virol 1996; 49:170–177 [View Article][PubMed]
    [Google Scholar]
  40. IASR Virus [Table Archives]. National Institute of Infectious Diseases. www.niid.go.jp/niid/en/typhi-m/iasr-reference/230-iasr-data/5495-iasr-table-ve-p.html [accessed 9 September 2017]
  41. Shiao S, Aoki K, Isobe K, Tsuzuki WL, Itoh N et al. Genome analysis of adenovirus type 3 isolated in Japan. J Clin Microbiol 1996; 34:413–416[PubMed]
    [Google Scholar]
  42. Itakura S, Aoki K, Sawada H, Shinagawa M. Analysis with restriction endonucleases recognizing 4- or 5-base-pair sequences of human adenovirus type 3 isolated from ocular diseases in Sapporo, Japan. J Clin Microbiol 1990; 28:2365–2369[PubMed]
    [Google Scholar]
  43. Wadell G. Molecular epidemiology of human adenoviruses. Curr Top Microbiol Immunol 1984; 110:191–220[PubMed]
    [Google Scholar]
  44. O'Donnell B, Bell E, Payne SB, Mautner V, Desselberger U. Genome analysis of species 3 adenoviruses isolated during summer outbreaks of conjunctivitis and pharyngoconjunctival fever in the Glasgow and London areas in 1981. J Med Virol 1986; 18:213–227 [View Article][PubMed]
    [Google Scholar]
  45. Choi EH, Kim HS, Park KH, Lee HJ. Genetic heterogeneity of the hexon gene of adenovirus type 3 over a 9-year period in Korea. J Med Virol 2006; 78:379–383 [View Article][PubMed]
    [Google Scholar]
  46. Mizuta K, Suzuki H, Ina Y, Yazaki N, Sakamoto M et al. Six-year longitudinal analysis of adenovirus type 3 genome types isolated in Yamagata, Japan. J Med Virol 1994; 42:198–202 [View Article][PubMed]
    [Google Scholar]
  47. Mizuta K, Matsuzaki Y, Hongo S, Ohmi A, Okamoto M et al. Stability of the seven hexon hypervariable region sequences of adenovirus types 1-6 isolated in Yamagata, Japan between 1988 and 2007. Virus Res 2009; 140:32–39 [View Article][PubMed]
    [Google Scholar]
  48. Chang SY, Lee CN, Lin PH, Huang HH, Chang LY et al. A community-derived outbreak of adenovirus type 3 in children in Taiwan between 2004 and 2005. J Med Virol 2008; 80:102–112 [View Article][PubMed]
    [Google Scholar]
  49. James L, Vernon MO, Jones RC, Stewart A, Lu X et al. Outbreak of human adenovirus type 3 infection in a pediatric long-term care facilityIllinois, 2005. Clin Infect Dis Off Publ Infect Dis Soc Am 2007; 45:416–420 [View Article]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/jmm/10.1099/jmm.0.000625
Loading
/content/journal/jmm/10.1099/jmm.0.000625
Loading

Data & Media loading...

Most cited Most Cited RSS feed