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Volume 106,
Issue 6,
2025
Volume 106, Issue 6, 2025
- Letters
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Annual (2024) taxonomic update of RNA-directed RNA polymerase-encoding negative-sense RNA viruses (realm Riboviria: kingdom Orthornavirae: phylum Negarnaviricota)
More LessJens H. Kuhn, Scott Adkins, Sergey V. Alkhovsky (Альховский Сергей Владимирович), Wenxia An (安雯霞), Tatjana Avšič-Županc, María A. Ayllón, Katarina Bačnik, Justin Bahl, Anne Balkema-Buschmann, Matthew J. Ballinger, Martin Beer, Nicolas Bejerman, Éric Bergeron, Nadine Biedenkopf, Carol D. Blair, Kim R. Blasdell, Steven B. Bradfute, Thomas Briese, Katherine Brown, Paul A. Brown, Ursula J. Buchholz, Michael J. Buchmeier, Alexander Bukreyev, Felicity Burt, Charles H. Calisher, Sten Calvelage, Mengji Cao (曹孟籍), Inmaculada Casas, Camila Chabi-Jesus, Kartik Chandran, Rémi N. Charrel, Anya Crane, Laura N. Cuypers, Elena Dal Bó, Juan Carlos de la Torre, William M. de Souza, Rik L. de Swart, Humberto J. Debat, Nolwenn M. Dheilly, Nicholas Di Paola, Francesco Di Serio, Ralf G. Dietzgen, Michele Digiaro, J. Felix Drexler, W. Paul Duprex, Ralf Dürrwald, Andrew J. Easton, Toufic Elbeaino, Koray Ergünay, Mirette I.Y. Eshak, Guozhong Feng (冯国忠), Andrew E. Firth, Anthony R. Fooks, Pierre B.H. Formenty, Juliana Freitas-Astúa, Conrad M. Freuling, Tuija Gadd, Selma Gago-Zachert, María Laura García, Adolfo García-Sastre, Aura R. Garrison, Tony L. Goldberg, Jean-Paul J. Gonzalez, Joëlle Goüy de Bellocq, Anthony Griffiths, Martin H. Groschup, Sophie Gryseels, Ion Gutiérrez-Aguirre, Stephan Günther, John Hammond, Jussi Hepojoki, Masayuki Horie (堀江真行), Adam J. Hume, Timothy H. Hyndman, Dirk Höper, Dàohóng Jiāng (姜道宏), Sandra Junglen, Boris Klempa, Jonas Klingström, Hideki Kondō (近藤秀樹), Eugene V. Koonin, Mart Krupovic, Kenji Kubota (久保田健嗣), Gael Kurath, Denis Kutnjak, Lies Laenen, Amy J. Lambert, Benhur Lee, Chengyu Li (李呈宇), Jiànróng Lǐ (李建荣), Jun-Min Li (李俊敏), Igor S. Lukashevich, Piet Maes, Marco Marklewitz, Sergio H. Marshall, Shin-Yi L. Marzano, John W. McCauley, Nataša Mehle, Ali Mirazimi, Toshiyuki Morikawa (守川俊幸), Elke Mühlberger, Thomas Müller, Rayapati Naidu, Tomohide Natsuaki (夏秋知英), Beatriz Navarro, José A. Navarro, Yutaro Neriya (煉谷裕太朗), Sergey V. Netesov (Нетёсов Сергей Викторович), Vittorio M. Nicoloso, Gabriele Neumann, Tiina Nokireki, Norbert Nowotny, Márcio R.T. Nunes, Francisco M. Ochoa-Corona, Gustavo Palacios, Vicente Pallás, Anna Papa (Άννα Παπά), Sofia Paraskevopoulou (Σοφία Παρασκευοπούλου), Colin R. Parrish, Alex Pauvolid-Corrêa, Anja Pecman, Daniel R. Pérez, Florian Pfaff, Richard K. Plemper, Thomas S. Postler, Sheli R. Radoshitzky, Pedro L. Ramos-González, Maja Ravnikar, Renato O. Resende, Gábor Reuter, Carina A. Reyes, Mark Paul Selda Rivarez, Víctor Romanowski, Dennis Rubbenstroth, Luisa Rubino, Jonathan A. Runstadler, Ana Ruiz-Padilla, Sead Sabanadzovic, Maria S. Salvato, Takahide Sasaya (笹谷孝英)I, Connie S. Schmaljohn, Heike Schmidt-Posthaus, Martin Schwemmle, Gabrijel Seljak, Torsten Seuberlich, Mang Shi (施莽), Yoshifumi Shimomoto (下元祥史), Peter Simmonds, Manuela Sironi, Donald B. Smith, Sophie Smither, Jin-Won Song (송진원), Kirsten M. Spann, Jessica R. Spengler, Mark D. Stenglein, Ayato Takada (高田礼人), Chika Takemura, Niina Tammiranta, Robert B. Tesh, Natalie J. Thornburg, Nicole D. Tischler, Yasuhiro Tomitaka (冨髙保弘), Keizō Tomonaga (朝長啓造), Noël Tordo, Massimo Turina, Ioannis E. Tzanetakis (Ιωάννης Ε. Τζανετάκης), Anna Maria Vaira, Bernadette van den Hoogen, Bert Vanmechelen, Nikos Vasilakis (Νίκος Βασιλάκης), Martin Verbeek, Susanne von Bargen, Ana Vučurović, Jiro Wada (和田治郎), Victoria Wahl, Peter J. Walker, Fei Wang (王飞), Anna E. Whitfield, John V. Williams, Yuri I. Wolf, Hironobu Yanagisawa (栁澤広宣), Caixia Yang (杨彩霞), Gongyin Ye (叶恭银), Mei Chun Yu (于美春), F. Murilo Zerbini, Song Zhang, Arnfinn Lodden Økland and Holly R. HughesIn April 2024, following the annual International Committee on Taxonomy of Viruses (ICTV) ratification vote on newly proposed taxa, the phylum Negarnaviricota was expanded by 1 new order, 1 new family, 6 new subfamilies, 34 new genera and 270 new species. One class, two orders and six species were renamed. Seven families and 12 genera were moved; ten species were renamed and moved; and nine species were abolished. This article presents the updated taxonomy of Negarnaviricota as currently accepted by the ICTV, providing an essential annual update on the classification of members of this phylum that deepen understandings of their evolution, and supports critical public health measures for virus identification and tracking.
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- Reviews
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Binomial names for virus species: the rediscovery of an old idea
More LessThe International Committee on Taxonomy of Viruses now mandates that all virus species names be presented in a binomial format. This requirement replaces the various naming formats that have been used since the first official virus taxonomy Report was published in 1971. A review of virus classification schemes as they have developed over the past century shows that, although there was an initial inclination to adopt a Linnaean binomial nomenclature, various other naming formats were gradually introduced for practical and scientific reasons. However, as our understanding of viruses has advanced – especially with the increasing availability of genomic sequences – the arguments for these alternative formats (such as that viruses were not living or that they evolved too quickly) have diminished. The nomenclature for virus species now aligns more closely with the conventions used in other areas of biology, the format having nearly come full circle from its beginnings a century ago.
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H5N1 2.3.4.4b: a review of mammalian adaptations and risk of pandemic emergence
More LessAvian influenza viruses can cause severe disease when they spill over into mammalian and human hosts. H5N1 clade 2.3.4.4b has spread globally since 2021, decimating avian species, and has spilled over into mammalian species, causing sporadic infections and fatal outbreaks in sea lions, cats, mink and dairy cattle. Increased human cases of H5N1 are fuelling concern that H5N1 could soon adapt to become a new pandemic virus. Adaptive mutations have emerged following spillover, which support H5N1 outbreaks in mammalian populations and include changes to the PB2 such as E627K, D701N, M631L and T271A. Further changes to haemagglutinin, altering binding preference to human-like α2,6 sialic acid receptors have yet to be seen. Here, we review the adaptations that have emerged in mammals throughout the 2.3.4.4b outbreak and the molecular mechanisms behind these mutations to assess the pandemic risk of this virus.
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The saga to monitor and control norovirus: the rise of GII.17
More LessNorovirus is a major cause of acute gastroenteritis in all age groups, with recent surges of cases in Europe and the USA reinforcing the influence of this virus on human health. Despite its societal impact, no vaccine or antiviral drug is available. The development of these countermeasures has been impaired at least in part by the extreme genetic and antigenic diversity of noroviruses. Here, we reviewed historical norovirus outbreaks, including the pandemics of GII.4 norovirus that were first documented in the mid-1990s, sporadic increases of non-GII.4 norovirus (e.g. GII.17 and GII.2) during the 2010s and, most recently, the ongoing large outbreaks caused by a new cluster of GII.17 noroviruses. This five-decade-long journey of tracking noroviruses in the human population illustrates the importance and challenges of battling this evolving virus.
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- Animal
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- RNA Viruses
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Isolation and genetic characterization of a novel Kevo orbivirus and a strain of Mobuck virus from Ochlerotatus communis mosquitoes in Finland
More LessThe genus Orbivirus (Reovirales, Sedoreoviridae) comprises several globally important vector-borne animal viruses, such as Culicoides-borne bluetongue virus, African horse sickness virus and epizootic haemorrhagic disease virus (EHDV). Orbiviruses that are associated with mosquitoes are a diverse group including established mosquito-borne animal pathogens such as the Peruvian horse sickness virus and phylogenetically related less well-characterized viruses isolated mostly from mammals. Although reported from various geographic regions, these viruses have not previously been detected in northern Europe. Using next-generation sequencing and bioinformatic tools, we identified two orbivirus strains from virus isolation trials of Finnish Ochlerotatus communis specimens performed in mosquito C6/36 cells. Phylogenetic analysis of the obtained sequence data suggested one of the isolates to represent a strain of Mobuck virus (MBV), previously described in the USA from a diseased white-tailed deer coinfected with EHDV. The second isolate, which originated from Kevo in northern Finland, was found divergent from all publicly available orbivirus sequences and was tentatively named as Kevo orbivirus (KEVOOV). Further studies are required to investigate the potential animal disease associations of the newly detected orbiviruses KEVOOV and MBV in Finland and possibly wider in Northern Europe.
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Transmission routes of cluster 3 Tembusu virus in ducks and chickens
More LessTembusu virus (TMUV) is an emerging mosquito-borne flavivirus, primarily transmitted by Culex spp. mosquitoes. The 2010 outbreak of TMUV in ducks revealed that the virus had acquired direct contact and aerosol transmission routes, enabling its rapid spread in duck farms. Recently, cluster 3 TMUV has increasingly been isolated from chickens, ducks and geese. In this study, we examined the pathogenicity and transmission routes of the cluster 3 TMUV Shandong 2021 (SD) strain in ducks and chickens. Our results show that TMUV SD can infect both species, but only in ducks could TMUV be detected in throat and cloacal swabs. In ducks, the virus can spread without mosquito involvement to co-housed naïve birds, demonstrating direct transmission capability. Conversely, no virus shedding and direct transmission were observed in chickens, suggesting that mosquitoes are required for virus transmission between chickens. Indeed, Culex pipiens mosquitoes could become infected by biting chickens infected with the TMUV SD and transmit the virus to naïve chickens. Our results, for the first time, provide direct evidence that TMUV can be transmitted by mosquitoes in a laboratory setting. Furthermore, our findings indicate that viral excretion through the respiratory tract and/or digestive tract is essential for direct contact transmission of TMUV, which is a critical factor in the epidemic spread of TMUV. These insights into the transmission dynamics of a cluster 3 TMUV emphasize the importance of effective vector control and biosecurity measures in managing and preventing outbreaks.
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Comparative clinical, virological and pathological characterization of equine rotavirus A G3P[12] and G14P[12] infection in neonatal mice
More LessGroup A rotavirus (RVA) infections are a leading cause of neonatal diarrhoea in foals. Neonatal mice could serve as a useful tool to study the pathogenesis of equine RVA (ERVA) as well as a preclinical model for assessment of vaccine efficacy. This study aimed to comparatively evaluate the clinical, virological and pathological features of ERVA G3P[12] and G14P[12] infection in neonatal mice and compare them with porcine OSU G5P[7] and bovine UK G6P[5] RVA reference strains. Neonatal mice orally inoculated with equine, bovine and porcine RVA developed short-lived diarrhoea at variable rates, G14P[12] (61%) and G3P[12] (88%). Viral replication kinetics for all strains were characterized by a gradual decline in viral load to levels below the limit of detection by 72–96 h post-infection (hpi), in line with the reduction in the number of infected enterocytes demonstrated via RNAscope® in situ hybridization. Importantly, the clinical and viral replication kinetics correlated with significant microscopic intestinal alterations characterized by enterocyte vacuolation, scalloping and hyperplasia with a peak occurring at 48 hpi and persisting until at least 96 hpi. Overall, neonatal mice develop a disease phenotype of short duration following infection with equine, porcine and bovine RVA strains characterized by diarrhoea and pronounced histological alterations in the intestinal villi. The limited intestinal viral replication is likely associated with host restriction. The clinical and pathological phenotypes developed by neonatal mice following experimental infection could serve as a preclinical tool to assess vaccine efficacy and for pathogenesis studies involving RVA of equine, porcine and bovine origin.
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Wisteria floribunda agglutinin enhances Zaire ebolavirus entry through interactions at specific N-linked glycosylation sites on the virus glycoprotein complex
More LessEntry of Zaire ebolavirus (EBOV) into a host cell is a complex process requiring interactions between the viral glycoproteins (GPs) and cellular factors. These entry factors are cell-specific and can include cell surface lectins and phosphatidylserine receptors. Niemann–Pick type C1 is critical to the late stage of the entry process. Entry has been demonstrated to be enhanced by interactions between the virion and surface-expressed lectins, which interact with carbohydrate moieties attached to the GP. In addition, soluble lectins, including mannose-binding lectin, can enhance entry in vitro. However, the mechanism of lectin-mediated enhancement remains to be defined. This study investigated the possibility that plant lectins, Wisteria floribunda agglutinin (WFA), soybean agglutinin (SBA) and Galanthus nivalis agglutinin (GNA), which possess different carbohydrate-binding specificities, influence EBOV entry. WFA was observed to potently enhance entry of lentiviral pseudotype viruses (PVs) expressing the GP of three Ebolavirus species [Zaire, Sudan (Sudan ebolavirus) and Reston (Reston ebolavirus)], with the greatest impact on EBOV. SBA had a modest enhancing effect on entry that was specific to EBOV, whilst GNA had no impact on the entry of any of the Ebolavirus species. None of the lectins enhanced the entry of control PVs expressing the surface proteins of other RNA viruses tested. WFA was demonstrated to bind directly with the EBOV-GP via the glycans, and mutational analysis implicated N238 as contributing to the interaction. Furthermore, enhancement was observed in both human and bat cell lines, indicating a highly conserved mechanism of action. We conclude that the binding of WFA to EBOV-GP through interactions including the glycan at N238 results in GP alterations that enhance entry, providing evidence of a mechanism for lectin-mediated virus entry enhancement. Targeting lectin-ligand interactions presents a potential strategy for restricting Ebolavirus entry.
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- Insect viruses
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Spatiotemporal prevalence and characterization of the lineage I insect-specific flavivirus, Quang Binh virus, isolated from Culex gelidus mosquitoes in Singapore
More LessInsect-specific flaviviruses (ISFs) are a group of orthoflaviviruses that can replicate efficiently in arthropods but are unable to replicate in vertebrate hosts. This contrasts with medically important orthoflaviviruses, such as dengue virus (DENV) and West Nile virus (WNV). Using the established monoclonal antibody against viral RNA intermediates in cell assay, we report the first isolation of an ISF, Quang Binh virus (QBV), in Singapore from three pools of Culex gelidus mosquitoes. To determine the spatiotemporal prevalence of QBV, a total of 17,070 mosquitoes, represented as 721 pools, were screened using a QBV-specific reverse transcriptase quantitative PCR assay, revealing 36 QBV-positive pools of mosquitoes detected mainly along the northern coastal regions of Singapore. Repeated detections over 12 months in a north-western nature reserve suggest local stable establishment of the virus. Phylogenetic and molecular analyses show that QBV sequences from the Singapore group together with other Southeast Asian sequences and that Cx. gelidus-derived sequences are phylogenetically distinct from those derived from Culex tritaeniorhynchus. We also present in vitro evidence that QBV is able to suppress DENV2 and WNVKUN in C6/36 cells by 2.9 logs and 1.8 logs, respectively. This report represents the first known spatiotemporal study of an ISF and highlights QBV’s potential as a biological control against medically important orthoflaviviruses.
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- RNA
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Aedes aegypti mosquitoes from Burkina Faso can transmit the chikungunya virus and Zika virus of the African lineage, but not the Zika virus of the Asian lineage
More LessAedes aegypti is the primary vector for the transmission of dengue virus (DENV), Zika virus (ZIKV), and chikungunya virus (CHIKV). While Burkina Faso has been facing an increase in DENV epidemics, no ZIKV or CHIKV outbreaks have been reported. Here, we, therefore, assessed the vector competence of Ae. aegypti mosquitoes from Burkina Faso for ZIKV and CHIKV transmission. Ae. aegypti mosquitoes from urban and peri-urban sites of Ouagadougou were orally infected via blood meal with different titres of a West African CHIKV strain and ZIKV strains of the Asian and African lineage. The infection rate for mosquitoes from both sites was ~65% for CHIKV, whereas the dissemination was 85% and 45%, respectively, in urban and peri-urban mosquitoes. The CHIKV transmission rates ranged between 14 and 18%. For the African lineage of ZIKV, the infection rate was higher for urban mosquitoes than peri-urban mosquitoes (100% vs. 80%), whereas the dissemination rate was 100% in mosquitoes from both sites. The transmission rates for African ZIKV ranged between 12 and 18% for both urban and peri-urban mosquitoes. In contrast to ZIKV of the African lineage, low infection rates (10–30%) and dissemination rates (14–50%) were observed with the Asian lineage of ZIKV. Additionally, mosquitoes from both sites could not transmit the ZIKV strain of the Asian lineage. This study demonstrates, for the first time, the capability of Ae. aegypti mosquitoes from Burkina Faso to transmit chikungunya virus and the pre-epidemic strain of Zika virus in their saliva, highlighting the importance of establishing surveillance for these viruses in Burkina Faso.
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Volumes and issues
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Volume 107 (2026)
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