1887

Abstract

Genomic characterization of cypovirus (HaCPV) isolated from China showed that insects were co-infected with several cypoviruses (CPVs). One of the CPVs (HaCPV-5) could be separated from the others by changing the rearing conditions of the larvae. This finding was further confirmed by nucleotide sequencing analysis. Genomic sequences of segments S10–S7 from HaCPV-14, S10 and S7 from HaCPV-5, and S10 from CPV-14 were compared. Results from database searches showed that the nucleotide sequences and deduced amino acid sequences of the newly identified CPVs had high levels of identity with those of reported CPVs of the same type, but not with CPVs of different types. Putative amino acid sequences of HaCPV-5 S7 were similar to that of the protein from (genus , family ), suggesting that CPVs and oryzaviruses are related more closely than other genera of the family . Conserved motifs were also identified at the ends of each RNA segment of the same virus type: type 14, 5′-AGAAUUU…CAGCU-3′; and type 5, 5′-AGUU…UUGC-3′. Our results are consistent with classification of CPV types based on the electrophoretic patterns of CPV double-stranded RNA.

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2006-02-01
2024-04-20
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References

  1. Anzola J. V., Xu Z., Asamizu T., Nuss D. L. 1987; Segment-specific inverted repeats found adjacent to conserved terminal sequences in wound tumor virus genome and defective interfering RNAs. Proc Natl Acad Sci U S A 84:8301–8305 [CrossRef]
    [Google Scholar]
  2. Attoui H., De Micco P., de Lamballerie X. 1997; Complete nucleotide sequence of Colorado tick fever virus segments M6, S1 and S2. J Gen Virol 78:2895–2899
    [Google Scholar]
  3. Attoui H., Billoir F., Cantaloube J. F., Biagini P., de Micco P., de Lamballerie X. 2000a; Strategies for the sequence determination of viral dsRNA genomes. J Virol Methods 89:147–158 [CrossRef]
    [Google Scholar]
  4. Attoui H., Billoir F., Biagini P., de Micco P., de Lamballerie X. 2000b; Complete sequence determination and genetic analysis of Banna virus and Kadipiro virus: proposal for assignment to a new genus ( Seadornavirus ) within the family Reoviridae . J Gen Virol 81:1507–1515
    [Google Scholar]
  5. Belloncik S. 1989; Cytoplasmic polyhedrosis viruses – Reoviridae . Adv Virus Res 37:173–209
    [Google Scholar]
  6. Belloncik S. 1996; Interactions of cytoplasmic polyhedrosis viruses with insects. Adv Insect Physiol 26:235–295
    [Google Scholar]
  7. Belloncik S., Mori H. 1998; Cypoviruses. In The Insect Viruses pp  337–369 Edited by Miller L. K., Ball L. A. New York: Plenum;
    [Google Scholar]
  8. Belloncik S., Liu J., Su D., Arella M. 1996; Identification and characterization of a new Cypovirus , type 14, isolated from Heliothis armigera . J Invertebr Pathol 67:41–47 [CrossRef]
    [Google Scholar]
  9. Chen X., Sun X., Hu Z., Li M., O'Reilly D. R., Zuidema D., Vlak J. M. 2000; Genetic engineering of Helicoverpa armigera single-nucleocapsid nucleopolyhedrovirus as an improved pesticide. J Invertebr Pathol 76:140–146 [CrossRef]
    [Google Scholar]
  10. Dryden K. A., Farsetta D. L., Wang G., Keegan J. M., Fields B. N., Baker T. S., Nibert M. L. 1998; Internal/structures containing transcriptase-related proteins in top component particles of mammalian orthoreovirus. Virology 245:33–46 [CrossRef]
    [Google Scholar]
  11. Fossiez F., Belloncik S., Arella M. 1989; Nucleotide sequence of the polyhedrin gene of Euxoa scandens cytoplasmic polyhedrosis virus (EsCPV). Virology 169:462–465 [CrossRef]
    [Google Scholar]
  12. Galinski M. S., Yu Y., Heminway B. R., Beaudreau G. S. 1994; Analysis of the C-polyhedrin genes from different geographical isolates of a type 5 cytoplasmic polyhedrosis virus. J Gen Virol 75:1969–1974 [CrossRef]
    [Google Scholar]
  13. Hagiwara K., Matsumoto T. 2000; Nucleotide sequences of genome segments 6 and 7 of Bombyx mori cypovirus 1, encoding the viral structural proteins V4 and V5, respectively. J Gen Virol 81:1143–1147
    [Google Scholar]
  14. Hagiwara K., Naitow H. 2003; Assembly into single-shelled virus-like particles by major capsid protein VP1 encoded by genome segment S1 of Bombyx mori cypovirus 1. J Gen Virol 84:2439–2441 [CrossRef]
    [Google Scholar]
  15. Hagiwara K., Tomita M., Kobayashi J., Miyajima S., Yoshimura T. 1998a; Nucleotide sequence of Bombyx mori cytoplasmic polyhedrosis virus segment 8. Biochem Biophys Res Commun 247:549–553 [CrossRef]
    [Google Scholar]
  16. Hagiwara K., Tomita M., Nakai K., Kobayashi J., Miyajima S., Yoshimura T. 1998b; Determination of the nucleotide sequence of Bombyx mori cytoplasmic polyhedrosis virus segment 9 and its expression in BmN4 cells. J Virol 72:5762–5768
    [Google Scholar]
  17. Hagiwara K., Kobayashi J., Tomita M., Yoshimura T. 2001; Nucleotide sequence of genome segment 5 from Bombyx mori cypovirus 1. Arch Virol 146:181–187 [CrossRef]
    [Google Scholar]
  18. Hagiwara K., Rao S., Scott S. W., Carner G. R. 2002; Nucleotide sequences of segments 1, 3 and 4 of the genome of Bombyx mori cypovirus 1 encoding putative capsid proteins VP1, VP3 and VP4, respectively. J Gen Virol 83:1477–1482
    [Google Scholar]
  19. Hill C. L., Booth T. F., Prasad B. V. V., Grimes J. M., Mertens P. P. C., Sutton G. C., Stuart D. I. 1999; The structure of a cypovirus and the functional organization of dsRNA viruses. Nat Struct Biol 6:565–568 [CrossRef]
    [Google Scholar]
  20. Ikeda K., Nagaoka S., Winkler S., Kotani K., Yagi H., Nakanishi K., Miyajima S., Kobayashi J., Mori H. 2001; Molecular characterization of Bombyx mori cytoplasmic polyhedrosis virus genome segment 4. J Virol 75:988–995 [CrossRef]
    [Google Scholar]
  21. Kuchino Y., Nishimura S., Smith R. E., Furuichi Y. 1982; Homologous terminal sequences in the double-stranded RNA genome segments of cytoplasmic polyhedrosis virus of the silkworm Bombyx mori . J Virol 44:538–543
    [Google Scholar]
  22. Lambden P. R., Cooke S. J., Caul E. O., Clarke I. N. 1992; Cloning of noncultivatable human rotavirus by single primer amplification. J Virol 66:1817–1822
    [Google Scholar]
  23. Lu G., Zhou Z. H., Baker M. L., Jakana J., Cai D., Wei X., Chen S., Gu X., Chiu W. 1998; Structure of double-shelled rice dwarf virus. J Virol 72:8541–8549
    [Google Scholar]
  24. Mertens P. P. C., Crook N. E., Rubinstein R., Pedley S., Payne C. C. 1989; Cytoplasmic polyhedrosis virus classification by electropherotype; validation by serological analyses and agarose gel electrophoresis. J Gen Virol 70:173–185 [CrossRef]
    [Google Scholar]
  25. Mertens P. P. C., Pedley S., Crook N. E., Rubinstein R., Payne C. C. 1999; A comparison of six cypovirus isolates by cross-hybridisation of their dsRNA genome segments. Arch Virol 144:561–576 [CrossRef]
    [Google Scholar]
  26. Mertens P. P. C., Arella M., Attoui H. & 41 other authors 2000; Family Reoviridae . In Virus Taxonomy. Seventh Report of the International Committee on Taxonomy of Viruses pp  395–480 Edited by van Regenmortel M. H. V., Fauquet C. M., Bishop D. H. L., Carstens E. B., Estes M. K., Lemon S. M., Maniloff J., Mayo M. A., McGeoch D. J., Pringle C. R., Wickner R. B. San Diego: Academic Press;
    [Google Scholar]
  27. Nibert M. L., Baker T. S. 2003; CPV, a stable and symmetrical machine for mRNA synthesis. Structure 11:605–607 [CrossRef]
    [Google Scholar]
  28. Page R. D. M. 1996; treeview: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12:357–358
    [Google Scholar]
  29. Payne C. C., Rivers C. F. 1976; A provisional classification of cytoplasmic polyhedrosis viruses based on the sizes of the RNA genome segments. J Gen Virol 33:71–85 [CrossRef]
    [Google Scholar]
  30. Payne C. C., Mertens P. P. C. 1983; Cytoplasmic polyhedrosis viruses. In The Reoviridae pp  425–504 Edited by Joklik W. K. New York: Plenum;
    [Google Scholar]
  31. Rao S., Carner G. R., Scott S. W., Omura T., Hagiwara K. 2003; Comparison of the amino acid sequences of RNA-dependent RNA polymerases of cypoviruses in the family Reoviridae . Arch Virol 148:209–219 [CrossRef]
    [Google Scholar]
  32. Schoehn G., Moss S. R., Nuttall P. A., Hewat E. A. 1997; Structure of Broadhaven virus by cryoelectron microscopy: correlation of structural and antigenic properties of Broadhaven virus and bluetongue virus outer capsid proteins. Virology 235:191–200 [CrossRef]
    [Google Scholar]
  33. Shaw A. L., Samal S. K., Subramanian K., Prasad B. V. 1996; The structure of aquareovirus shows how the different geometries of the two layers of the capsid are reconciled to provide symmetrical interactions and stabilization. Structure 4:957–967 [CrossRef]
    [Google Scholar]
  34. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. G. 1997; The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882 [CrossRef]
    [Google Scholar]
  35. Upadhyaya N. M., Ramm K., Gellatly J. A., Li Z., Kositratana W., Waterhouse P. M. 1997; Rice ragged stunt oryzavirus genome segments S7 and S10 encode non-structural proteins of Mr68,025 (Pns7) and Mr 32,364 (Pns10). . Arch Virol 142, 1719–1726 [CrossRef]
    [Google Scholar]
  36. Xia Q., Jakana J., Zhang J.-Q., Zhou Z. H. 2003; Structural comparisons of empty and full cytoplasmic polyhedrosis virus. J Biol Chem 278:1094–1100 [CrossRef]
    [Google Scholar]
  37. Xu Z., Anzola J. V., Nalin C. M., Nuss D. L. 1989; The 3′-terminal sequence of a wound tumor virus transcript can influence conformational and functional properties associated with the 5′-terminus. Virology 170:511–522 [CrossRef]
    [Google Scholar]
  38. Zhang H., Zhang J., Yu X., Lu X., Zhang Q., Jakana J., Chen D. H., Zhang X., Zhou Z. H. 1999; Visualization of protein-RNA interactions in cytoplasmic polyhedrosis virus. J Virol 73:1624–1629
    [Google Scholar]
  39. Zhou Z. H., Zhang H., Jakana J., Lu X.-Y., Zhang J.-Q. 2003; Cytoplasmic polyhedrosis virus structure at 8 Å by electron cryomicroscopy: structural basis of capsid stability and mRNA processing regulation. Structure 11:651–663 [CrossRef]
    [Google Scholar]
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