1887

Abstract

Members of the family are animal viruses that infect only invertebrates and poikilothermic vertebrates. The invertebrate iridovirus 31 (IIV31) was originally isolated from adult pill bugs, (class Crustacea, order Isopoda, suborder Oniscidea), found in southern California on the campus of the University of California, Riverside, USA. IIV31 virions are icosahedral, have a diameter of about 135 nm, and contain a dsDNA genome 220.222 kbp in length, with 35.09 mol % G+C content and 203 ORFs. Here, we describe the complete genome sequence of this virus and its annotation. This is the eighth genome sequence of an IIV reported.

Loading

Article metrics loading...

/content/journal/jgv/10.1099/vir.0.066076-0
2014-07-01
2019-10-21
Loading full text...

Full text loading...

/deliver/fulltext/jgv/95/7/1585.html?itemId=/content/journal/jgv/10.1099/vir.0.066076-0&mimeType=html&fmt=ahah

References

  1. Ashburner M., Ball C. A., Blake J. A., Botstein D., Butler H., Cherry J. M., Davis A. P., Dolinski K., Dwight S. S.. & other authors ( 2000; ). Gene ontology: tool for the unification of biology. . Nat Genet 25:, 25–29. [CrossRef] [PubMed]
    [Google Scholar]
  2. Bao W., Jurka J.. ( 2013; ). Homologues of bacterial TnpB_IS605 are widespread in diverse eukaryotic transposable elements. . Mob DNA 4:, 12. [CrossRef] [PubMed]
    [Google Scholar]
  3. Bideshi D. K., Renault S., Stasiak K., Federici B. A., Bigot Y.. ( 2003; ). Phylogenetic analysis and possible function of bro-like genes, a multigene family widespread among large double-stranded DNA viruses of invertebrates and bacteria. . J Gen Virol 84:, 2531–2544. [CrossRef] [PubMed]
    [Google Scholar]
  4. Bigot Y., Stasiak K., Rouleux-Bonnin F., Federici B. A.. ( 2000; ). Characterization of repetitive DNA regions and methylated DNA in ascovirus genomes. . J Gen Virol 81:, 3073–3082.[PubMed]
    [Google Scholar]
  5. Bigot Y., Renault S., Nicolas J., Moundras C., Demattei M. V., Samain S., Bideshi D. K., Federici B. A.. ( 2009; ). Symbiotic virus at the evolutionary intersection of three types of large DNA viruses; iridoviruses, ascoviruses, and ichnoviruses. . PLoS ONE 4:, e6397. [CrossRef] [PubMed]
    [Google Scholar]
  6. Bigot Y., Asgari S., Bideshi D. K., Cheng X., Federici B. A., Renault S.. ( 2011; ). Family Ascoviridae. . In Viral Taxonomy, IX Report of the International Committee on the Taxonomy of Viruses, , 3rd edn.. Edited by King A. M. Q., Adams M. J., Carstens E. B., Lefkowitz E. J... London:: Elsevier–Academic Press;.
    [Google Scholar]
  7. Bigot Y., Piégu B., Casteret S., Gavory F., Bideshi D. K., Federici B. A.. ( 2013; ). Characteristics of inteins in invertebrate iridoviruses and factors controlling insertion in their viral hosts. . Mol Phylogenet Evol 67:, 246–254. [CrossRef] [PubMed]
    [Google Scholar]
  8. Claeys Bouuaert C., Chalmers R.. ( 2013; ). Hsmar1 transposition is sensitive to the topology of the transposon donor and the target. . PLoS ONE 8:, e53690. [CrossRef] [PubMed]
    [Google Scholar]
  9. Cole A., Morris T. J.. ( 1980; ). A new iridovirus of two species of terrestrial isopods, Armadillidium vulgare and Porcellio scaber. . Intervirology 14:, 21–30. [CrossRef] [PubMed]
    [Google Scholar]
  10. Colson P., De Lamballerie X., Yutin N., Asgari S., Bigot Y., Bideshi D. K., Cheng X.-W., Federici B. A., Van Etten J. L.. & other authors ( 2013; ). “Megavirales”, a proposed new order for eukaryotic nucleocytoplasmic large DNA viruses. . Arch Virol 158:, 2517–2521. [CrossRef] [PubMed]
    [Google Scholar]
  11. Crénès G., Ivo D., Hérisson J., Dion S., Renault S., Bigot Y., Petit A.. ( 2009; ). The bacterial Tn9 chloramphenicol resistance gene: an attractive DNA segment for Mos1 mariner insertions. . Mol Genet Genomics 281:, 315–328. [CrossRef] [PubMed]
    [Google Scholar]
  12. D’Costa S. M., Yao H. J., Bilimoria S. L.. ( 2004; ). Transcriptional mapping in Chilo iridescent virus infections. . Arch Virol 149:, 723–742. [CrossRef] [PubMed]
    [Google Scholar]
  13. Delhon G., Tulman E. R., Afonso C. L., Lu Z., Becnel J. J., Moser B. A., Kutish G. F., Rock D. L.. ( 2006; ). Genome of invertebrate iridescent virus type 3 (mosquito iridescent virus). . J Virol 80:, 8439–8449. [CrossRef] [PubMed]
    [Google Scholar]
  14. Desnues C., La Scola B., Yutin N., Fournous G., Robert C., Azza S., Jardot P., Monteil S., Campocasso A.. & other authors ( 2012; ). Provirophages and transpovirons as the diverse mobilome of giant viruses. . Proc Natl Acad Sci U S A 109:, 18078–18083. [CrossRef] [PubMed]
    [Google Scholar]
  15. Eaton H. E., Metcalf J., Penny E., Tcherepanov V., Upton C., Brunetti C. R.. ( 2007; ). Comparative genomic analysis of the family Iridoviridae: re-annotating and defining the core set of iridovirus genes. . Virol J 4:, 11. [CrossRef] [PubMed]
    [Google Scholar]
  16. Federici B.. ( 1980; ). Isolation of an iridovirus from two terrestrial isopods, the pill bug, Armadillidium vulgare, and the sow bug, Porcellio dilatatus. . J Invertebr Pathol 36:, 373–381. [CrossRef]
    [Google Scholar]
  17. Gladyshev E. A., Arkhipova I. R.. ( 2009; ). A single-copy IS5-like transposon in the genome of a bdelloid rotifer. . Mol Biol Evol 26:, 1921–1929. [CrossRef] [PubMed]
    [Google Scholar]
  18. Henn M. R., Sullivan M. B., Stange-Thomann N., Osburne M. S., Berlin A. M., Kelly L., Yandava C., Kodira C., Zeng Q.. & other authors ( 2010; ). Analysis of high-throughput sequencing and annotation strategies for phage genomes. . PLoS ONE 5:, e9083. [CrossRef] [PubMed]
    [Google Scholar]
  19. Hussain M., Abraham A. M., Asgari S.. ( 2010; ). An ascovirus-encoded RNase III autoregulates its expression and suppresses RNA interference-mediated gene silencing. . J Virol 84:, 3624–3630. [CrossRef] [PubMed]
    [Google Scholar]
  20. Iyer L. M., Aravind L., Koonin E. V.. ( 2001; ). Common origin of four diverse families of large eukaryotic DNA viruses. . J Virol 75:, 11720–11734. [CrossRef] [PubMed]
    [Google Scholar]
  21. Jakob N. J., Müller K., Bahr U., Darai G.. ( 2001; ). Analysis of the first complete DNA sequence of an invertebrate iridovirus: coding strategy of the genome of Chilo iridescent virus. . Virology 286:, 182–196. (PMID: 11448171). [CrossRef] [PubMed]
    [Google Scholar]
  22. Jancovich J. K., Chinchar V. G., Hyatt A., Miyazaki T., Williams T., Zhang Q. Y.. ( 2011; ). Family Iridoviridae . . In Viral Taxonomy, IX Report of the International Committee on the Taxonomy of Viruses, , 3rd edn.. Edited by King A. M. Q., Adams M. J., Carstens E. B., Lefkowitz E. J... London:: Elsevier–Academic Press;.
    [Google Scholar]
  23. Petit A., Rouleux-Bonnin F., Lambelé M., Pollet N., Bigot Y.. ( 2007; ). Properties of the various Botmar1 transcripts in imagoes of the bumble bee, Bombus terrestris (Hymenoptera: Apidae). . Gene 390:, 52–66. [CrossRef] [PubMed]
    [Google Scholar]
  24. Piégu B., Guizard S., Spears T., Cruaud C., Couloux A., Bideshi D. K., Federici B. A., Bigot Y.. ( 2013a; ). Complete genome sequence of invertebrate iridescent virus 22 isolated from a blackfly larva. . J Gen Virol 94:, 2112–2116. [CrossRef] [PubMed]
    [Google Scholar]
  25. Piégu B., Guizard S., Tan Y., Cruaud C., Couloux A., Bideshi D. K., Federici B. A., Bigot Y.. ( 2013b; ). Complete genome sequence of invertebrate iridovirus IIV22A, a variant of IIV22, isolated originally from a blackfly larvae. . Stand Genomic Sci 9:, 3.
    [Google Scholar]
  26. Piégu B., Guizard S., Spears T., Cruaud C., Couloux A., Bideshi D. K., Federici B. A., Bigot Y.. ( 2013; c). Complete genome sequence of invertebrate iridovirus IIV-25 isolated from a blackfly larva. . Arch Virol (in press). [CrossRef] [PubMed]
    [Google Scholar]
  27. Piégu B., Guizard S., Spears T., Cruaud C., Couloux A., Bideshi D. K., Federici B. A., Bigot Y.. ( 2013d; ). Complete genome sequence of invertebrate iridovirus IIV30 isolated from the corn earworm, Helicoverpa zea . . J Invertebr Pathol 116:, 43–47. [CrossRef] [PubMed]
    [Google Scholar]
  28. Sinzelle L., Jégot G., Brillet B., Rouleux-Bonnin F., Bigot Y., Augé-Gouillou C.. ( 2008; ). Factors acting on Mos1 transposition efficiency. . BMC Mol Biol 9:, 106. [CrossRef] [PubMed]
    [Google Scholar]
  29. Stasiak K., Renault S., Demattei M. V., Bigot Y., Federici B. A.. ( 2003; ). Evidence for the evolution of ascoviruses from iridoviruses. . J Gen Virol 84:, 2999–3009. [CrossRef] [PubMed]
    [Google Scholar]
  30. van Oers M. M., Vlak J. M.. ( 2007; ). Baculovirus genomics. . Curr Drug Targets 8:, 1051–1068. [CrossRef] [PubMed]
    [Google Scholar]
  31. Wicker T., Sabot F., Hua-Van A., Bennetzen J. L., Capy P., Chalhoub B., Flavell A., Leroy P., Morgante M.. & other authors ( 2007; ). A unified classification system for eukaryotic transposable elements. . Nat Rev Genet 8:, 973–982. . [CrossRef] [PubMed]
    [Google Scholar]
  32. Wijnhoven H., Berg M. P.. ( 1999; ). Some notes on the distribution and ecology of Iridovirus (Iridovirus, Iridoviridae) in terrestrial isopods (Isopoda, Oniscidae). . Crustaceana 72:, 145–156. [CrossRef]
    [Google Scholar]
  33. Williams T.. ( 1994; ). Comparative studies of iridoviruses: further support for a new classification. . Virus Res 33:, 99–121. [CrossRef] [PubMed]
    [Google Scholar]
  34. Williams T.. ( 2008; ). Natural invertebrate hosts of iridoviruses (Iridoviridae). . Neotrop Entomol 37:, 615–632. [CrossRef] [PubMed]
    [Google Scholar]
  35. Williams T., Cory J. S.. ( 1994; ). Proposals for a new classification of iridescent viruses. . J Gen Virol 75:, 1291–1301. [CrossRef] [PubMed]
    [Google Scholar]
  36. Wong C. K., Young V. L., Kleffmann T., Ward V. K.. ( 2011; ). Genomic and proteomic analysis of invertebrate iridovirus type 9. . J Virol 85:, 7900–7911. [CrossRef] [PubMed]
    [Google Scholar]
  37. Yan X., Olson N. H., Van Etten J. L., Bergoin M., Rossmann M. G., Baker T. S.. ( 2000; ). Structure and assembly of large lipid-containing dsDNA viruses. . Nat Struct Biol 7:, 101–103. [CrossRef] [PubMed]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/jgv/10.1099/vir.0.066076-0
Loading
/content/journal/jgv/10.1099/vir.0.066076-0
Loading

Data & Media loading...

Supplements

Supplementary material 

PDF

Most Cited This Month

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error