Genome sequence of a waterfowl aviadenovirus, goose adenovirus 4 Free

Abstract

We present, to our knowledge, the first complete genome sequence of a waterfowl aviadenovirus, goose adenovirus (GoAdV) strain P29, and an analysis of its genetic content in comparison with five published aviadenovirus genome sequences. Of the 35 genes predicted to encode functional proteins, the central region of the genome contains 19 (IVa2 to fiber-2) that were inherited from the ancestor of all known adenoviruses. Of the remaining genes, nine have orthologues only in aviadenoviruses and seven lack orthologues in any adenovirus. We also obtained limited sequence data for a pathogenic GoAdV strain D1036/08. Phylogenetic analyses placed the two GoAdV strains monophyletically in the genus . We propose designating strains P29 and D1036/08 as GoAdV-4 and GoAdV-5, respectively.

Loading

Article metrics loading...

/content/journal/jgv/10.1099/vir.0.042028-0
2012-11-01
2024-03-28
Loading full text...

Full text loading...

/deliver/fulltext/jgv/93/11/2457.html?itemId=/content/journal/jgv/10.1099/vir.0.042028-0&mimeType=html&fmt=ahah

References

  1. Bartha A., Mészáros J., Tanyi J. 1982; Antibodies against EDS-76 avian adenovirus in bird species before 1975. Avian Pathol 11:511–513 [View Article][PubMed]
    [Google Scholar]
  2. Benkö M., Harrach B. 2003; Molecular evolution of adenoviruses. Curr Top Microbiol Immunol 272:3–35[PubMed]
    [Google Scholar]
  3. Chiocca S., Kurzbauer R., Schaffner G., Baker A., Mautner V., Cotten M. 1996; The complete DNA sequence and genomic organization of the avian adenovirus CELO. J Virol 70:2939–2949[PubMed]
    [Google Scholar]
  4. Corredor J. C., Krell P. J., Nagy É. 2006; Sequence analysis of the left end of fowl adenovirus genomes. Virus Genes 33:95–106 [View Article][PubMed]
    [Google Scholar]
  5. Corredor J. C., Garceac A., Krell P. J., Nagy É. 2008; Sequence comparison of the right end of fowl adenovirus genomes. Virus Genes 36:331–344 [View Article][PubMed]
    [Google Scholar]
  6. Csontos L. 1967; Isolation of adenoviruses from geese. Preliminary report. Acta Vet Acad Sci Hung 17:217–219[PubMed]
    [Google Scholar]
  7. Davison A. J., Benkő M., Harrach B. 2003; Genetic content and evolution of adenoviruses. J Gen Virol 84:2895–2908 [View Article][PubMed]
    [Google Scholar]
  8. Felsenstein J. 1989; phylip – phylogeny inference package (version 3.2). Cladistics 5:164–166
    [Google Scholar]
  9. Gelderblom H., Maichle-Lauppe I. 1982; The fibers of fowl adenoviruses. Arch Virol 72:289–298 [View Article][PubMed]
    [Google Scholar]
  10. Grgić H., Yang D.-H., Nagy É. 2011; Pathogenicity and complete genome sequence of a fowl adenovirus serotype 8 isolate. Virus Res 156:91–97 [View Article][PubMed]
    [Google Scholar]
  11. Griffin B. D., Nagy É. 2011; Coding potential and transcript analysis of fowl adenovirus 4: insight into upstream ORFs as common sequence features in adenoviral transcripts. J Gen Virol 92:1260–1272 [View Article][PubMed]
    [Google Scholar]
  12. Hackett S. J., Kimball R. T., Reddy S., Bowie R. C. K., Braun E. L., Braun M. J., Chojnowski J. L., Cox W. A., Han K.-L. other authors 2008; A phylogenomic study of birds reveals their evolutionary history. Science 320:1763–1768 [View Article][PubMed]
    [Google Scholar]
  13. Harrach B., Kaján G. L. 2011; Aviadenovirus. In The Springer Index of Viruses, 2nd edn. pp. 13–28 Edited by Tidona C. A., Darai G. Berlin: Springer-Verlag; [View Article]
    [Google Scholar]
  14. Harrach B., Benkő M., Both G. W., Brown M., Davison A. J., Echavarría M., Hess M., Jones M. S., Kajon A. other authors 2011; Family Adenoviridae . In Virus Taxonomy: Classification and Nomenclature of Viruses: Ninth Report of the International Committee on Taxonomy of Viruses pp. 125–141 Edited by King A. M. Q., Adams M. J., Carstens E. B., Lefkowitz E. San Diego, CA: Elsevier Academic Press;
    [Google Scholar]
  15. Hlinak A., Müller T., Kramer M., Mühle R. U., Liebherr H., Ziedler K. 1998; Serological survey of viral pathogens in bean and white-fronted geese from Germany. J Wildl Dis 34:479–486[PubMed] [CrossRef]
    [Google Scholar]
  16. Ivanics É., Palya V., Glávits R., Dán A., Pálfi V., Révész T., Benkő M. 2001; The role of egg drop syndrome virus in acute respiratory disease of goslings. Avian Pathol 30:201–208 [View Article][PubMed]
    [Google Scholar]
  17. Ivanics É., Palya V., Markos B., Dán A., Ursu K., Harrach B., Kaján G., Glávits R. 2010; Hepatitis and hydropericardium syndrome associated with adenovirus infection in goslings. Acta Vet Hung 58:47–58 [View Article][PubMed]
    [Google Scholar]
  18. Kaján G. L., Stefancsik R., Ursu K., Palya V., Benkő M. 2010; The first complete genome sequence of a non-chicken aviadenovirus, proposed to be turkey adenovirus 1. Virus Res 153:226–233 [View Article][PubMed]
    [Google Scholar]
  19. Kaján G. L., Sameti S., Benkő M. 2011; Partial sequence of the DNA-dependent DNA polymerase gene of fowl adenoviruses: a reference panel for a general diagnostic PCR in poultry. Acta Vet Hung 59:279–285 [View Article][PubMed]
    [Google Scholar]
  20. Kaleta E. F., Will H., Bernius E., Kruse W., Bolte A. L. 1998; [The serologic detection of virus-induced infections in the domestic goose (Anser anser dom.)]. Tierarztl Prax Ausg G Grosstiere Nutztiere 26:234–238 (in German) [PubMed]
    [Google Scholar]
  21. Le Goff F., Méderlé-Mangeot I., Jestin A., Langlois P. 2005; Deletion of open reading frames 9, 10 and 11 from the avian adenovirus CELO genome: effect on biodistribution and humoral responses. J Gen Virol 86:2019–2027 [View Article][PubMed]
    [Google Scholar]
  22. Mangel W. F., Baniecki M. L., McGrath W. J. 2003; Specific interactions of the adenovirus proteinase with the viral DNA, an 11-amino-acid viral peptide, and the cellular protein actin. Cell Mol Life Sci 60:2347–2355 [View Article][PubMed]
    [Google Scholar]
  23. Marek A., Nolte V., Schachner A., Berger E., Schlötterer C., Hess M. 2012; Two fiber genes of nearly equal lengths are a common and distinctive feature of Fowl adenovirus C members. Vet Microbiol 156:411–417 [View Article][PubMed]
    [Google Scholar]
  24. Meulemans G., Boschmans M., Berg T. P., Decaesstecker M. 2001; Polymerase chain reaction combined with restriction enzyme analysis for detection and differentiation of fowl adenoviruses. Avian Pathol 30:655–660 [View Article][PubMed]
    [Google Scholar]
  25. Meulemans G., Couvreur B., Decaesstecker M., Boschmans M., van den Berg T. P. 2004; Phylogenetic analysis of fowl adenoviruses. Avian Pathol 33:164–170 [View Article][PubMed]
    [Google Scholar]
  26. Ojkić D., Nagy É. 2000; The complete nucleotide sequence of fowl adenovirus type 8. J Gen Virol 81:1833–1837[PubMed]
    [Google Scholar]
  27. Papp T., Palya V., Benkő M., Adair B. M., Harrach B. 2003; Aviadenoviruses isolated from waterfowls (order Anseriformes) cluster on a separated branch of the phylogenetic tree of the genus. In 6th International Congress of Veterinary Virology: Virus Persistence and Evolution Saint-Malo; France: p. 161 Edited by A. Jestin & G. Clement
    [Google Scholar]
  28. Payet V., Arnauld C., Picault J.-P., Jestin A., Langlois P. 1998; Transcriptional organization of the avian adenovirus CELO. J Virol 72:9278–9285[PubMed]
    [Google Scholar]
  29. Riddell C. 1984; Viral hepatitis in domestic geese in Saskatchewan. Avian Dis 28:774–782 [View Article][PubMed]
    [Google Scholar]
  30. Schrag J. D., Cygler M. 1997; Lipases and α/β hydrolase fold. Methods Enzymol 284:85–107 [View Article][PubMed]
    [Google Scholar]
  31. Schrenzel M., Oaks J. L., Rotstein D., Maalouf G., Snook E., Sandfort C., Rideout B. 2005; Characterization of a new species of adenovirus in falcons. J Clin Microbiol 43:3402–3413 [View Article][PubMed]
    [Google Scholar]
  32. Sheppard M., Werner W., McCoy R. J., Johnson M. A. 1998; The major late promoter and bipartite leader sequence of fowl adenovirus. Arch Virol 143:537–548 [View Article][PubMed]
    [Google Scholar]
  33. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. 2011; mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739 [View Article][PubMed]
    [Google Scholar]
  34. Tollefson A. E., Ying B., Doronin K., Sidor P. D., Wold W. S. M. 2007; Identification of a new human adenovirus protein encoded by a novel late l-strand transcription unit. J Virol 81:12918–12926 [View Article][PubMed]
    [Google Scholar]
  35. Washietl S., Eisenhaber F. 2003; Reannotation of the CELO genome characterizes a set of previously unassigned open reading frames and points to novel modes of host interaction in avian adenoviruses. BMC Bioinformatics 4:55 [View Article][PubMed]
    [Google Scholar]
  36. Webster A., Hay R. T., Kemp G. 1993; The adenovirus protease is activated by a virus-coded disulphide-linked peptide. Cell 72:97–104 [View Article][PubMed]
    [Google Scholar]
  37. Wellehan J. F. X., Johnson A. J., Harrach B., Benkö M., Pessier A. P., Johnson C. M., Garner M. M., Childress A., Jacobson E. R. 2004; Detection and analysis of six lizard adenoviruses by consensus primer PCR provides further evidence of a reptilian origin for the atadenoviruses. J Virol 78:13366–13369 [View Article][PubMed]
    [Google Scholar]
  38. Zsák L., Kisary J. 1984; Characterisation of adenoviruses isolated from geese. Avian Pathol 13:253–264 [View Article][PubMed]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/jgv/10.1099/vir.0.042028-0
Loading
/content/journal/jgv/10.1099/vir.0.042028-0
Loading

Data & Media loading...

Supplements

Supplementary material 1

PDF

Most cited Most Cited RSS feed