Identification, characterization and full-length sequence analysis of a novel dsRNA virus isolated from the arboreal ant Camponotus yamaokai

References

1. Bekaert M., Bidou L., Denise A., Duchateau-Nguyen G., Forest J.P., Froidevaux C., Hatin I., Rousset J.P., Termier M. (2003). Towards a computational model for − 1 eukaryotic frameshifting sitesBioinformatics 19327–335.[CrossRef] [Google Scholar]
2. Darriba D., Taboada G.L., Doallo R., Posada D. (2011). ProtTest 3: fast selection of best-fit models of protein evolutionBioinformatics 271164–1165.[CrossRef] [Google Scholar]
3. Gouy M., Guindon S., Gascuel O. (2010). SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree buildingMol Biol Evol 27221–224.[CrossRef] [Google Scholar]
4. Guindon S., Gascuel O. (2003). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihoodSyst Biol 52696–704.[CrossRef] [Google Scholar]
5. Guindon S., Dufayard J.F., Lefort V., Anisimova M., Hordijk W., Gascuel O. (2010). New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0Syst Biol 59307–321.[CrossRef] [Google Scholar]
6. Haugland O., Mikalsen A.B., Nilsen P., Lindmo K., Thu B.J., Eliassen T.M., Roos N., Rode M., Evensen O. (2011). Cardiomyopathy syndrome of atlantic salmon (Salmo salar L.) is caused by a double-stranded RNA virus of the Totiviridae familyJ Virol 855275–5286.[CrossRef] [Google Scholar]
7. Isawa H., Kuwata R., Hoshino K., Tsuda Y., Sakai K., Watanabe S., Nishimura M., Satho T., Kataoka M., other authors. (2011). Identification and molecular characterization of a new nonsegmented double-stranded RNA virus isolated from Culex mosquitoes in JapanVirus Res 155147–155.[CrossRef] [Google Scholar]
8. Jacks T., Power M.D., Masiarz F.R., Luciw P.A., Barr P.J., Varmus H.E. (1988). Characterization of ribosomal frameshifting in HIV-1 gag-pol expressionNature 331280–283.[CrossRef] [Google Scholar]
9. Larkin M.A., Blackshields G., Brown N.P., Chenna R., McGettigan P.A., McWilliam H., Valentin F., Wallace I.M., Wilm A., other authors. (2007). Clustal W and Clustal X version 2.0Bioinformatics 232947–2948.[CrossRef] [Google Scholar]
10. Liu H., Fu Y., Jiang D., Li G., Xie J., Cheng J., Peng Y., Ghabrial S.A., Yi X. (2010). Widespread horizontal gene transfer from double-stranded RNA viruses to eukaryotic nuclear genomesJ Virol 8411876–11887.[CrossRef] [Google Scholar]
11. Miyazaki S., Iwabuchi K., Pak J., Fukuhara T., Nitta T. (1996). Selective occurrence of endogenous double-stranded RNAs in insectsInsect Biochem Mol Biol 26955–961.[CrossRef] [Google Scholar]
12. Morris T.J., Dodds J.A. (1979). Isolation and analysis of double-stranded RNA from virus-infected plant and fungal tissuePhytopathology 69854–858.[CrossRef] [Google Scholar]
13. Nibert M.L. (2007). ‘2A-like’ and ‘shifty heptamer’ motifs in penaeid shrimp infectious myonecrosis virus, a monosegmented double-stranded RNA virusJ Gen Virol 881315–1318.[CrossRef] [Google Scholar]
14. Posada D., Buckley T.R. (2004). Model selection and model averaging in phylogenetics: advantages of Akaike information criterion and Bayesian approaches over likelihood ratio testsSyst Biol 53793–808.[CrossRef] [Google Scholar]
15. Roossinck M.J. (2011). The good viruses: viral mutualistic symbiosesNat Rev Microbiol 999–108.[CrossRef] [Google Scholar]
16. Sasaki K., Satoh T., Obara Y. (1995). Sperm utilization by honey bee queens; DNA fingerprinting analysisAppl Entomol Zool (Jpn) 30335–341. [Google Scholar]
17. Satoh T. (1989). Comparisons between two apparently distinct forms of Camponotus nawai ITO (Hymenoptera, Formicidae)Insectes Soc 36277–292.[CrossRef] [Google Scholar]
18. Satoh T., Masuko K., Matsumoto T. (1997). Colony genetic structure in the mono- and polygynous sibling species of the ants Camponotus nawai Camponotus yamaokai: DNA fingerprint analysisEcol Res 1271–76.[CrossRef] [Google Scholar]
19. Tamura K., Stecher G., Peterson D., Filipski A., Kumar S. (2013). mega6: Molecular Evolutionary Genetics Analysis version 6.0Mol Biol Evol 302725–2729.[CrossRef] [Google Scholar]
20. Terayama M., Satoh T. (1990). A new species of the genus Camponotus from Japan, with notes on two known forms of the subgenus Myrmamblys (Hymenoptera, Formicidae)Jpn J Ent 58405–414. [Google Scholar]
21. Valles S.M., Hashimoto Y. (2009). Isolation and characterization of Solenopsis invicta virus 3, a new positive-strand RNA virus infecting the red imported fire ant, Solenopsis invicta Virology 388354–361.[CrossRef] [Google Scholar]
22. Valles S.M., Porter S.D., Firth A.E. (2014). Solenopsis invicta virus 3: pathogenesis and stage specificity in red imported fire antsVirology 460-46166–71.[CrossRef] [Google Scholar]
23. Wickner R., Wang C., Patterson J. (2012). Family Totiviridae . In Virus Taxonomy Eighth Report of the International Committee on Taxonomy of Viruses, pp. 639–650. Edited by Fauquet C., Mayo M., Maniloff J., Desselberger U., Ball L. LondonAcademic Press. [Google Scholar]
24. Wu Q., Luo Y., Lu R., Lau N., Lai E.C., Li W.X., Ding S.W. (2010). Virus discovery by deep sequencing and assembly of virus-derived small silencing RNAsProc Natl Acad Sci U S A 1071606–1611.[CrossRef] [Google Scholar]
25. Zhai Y., Attoui H., MohdJaafar F., Wang H.Q., Cao Y.X., Fan S.P., Sun Y.X., Liu L.D., Mertens P.P., other authors. (2010). Isolation and full-length sequence analysis of Armigeres subalbatus totivirus, the first totivirus isolate from mosquitoes representing a proposed novel genus (Artivirus) of the family Totiviridae J Gen Virol 912836–2845.[CrossRef] [Google Scholar]