Skip to content
1887

Abstract

The high pathogenicity avian influenza virus H5N1, which first emerged in the winter of 2021, has resulted in multiple outbreaks across the American continent through the summer of 2023 and they continue based on early 2025 records, presenting significant challenges for global health and food security. The viruses causing the outbreaks belong to clade 2.3.4.4b, which are descendants of the lineage A/Goose/Guangdong/1/1996 (Gs/Gd) through genetic reassortments with several low pathogenicity avian influenza viruses present in populations of Anseriformes and Charadriiformes orders. This review addresses these issues by thoroughly analysing available epidemiological databases and specialized literature reviews. This project explores the mechanisms behind the resurgence of the H5N1 virus. It provides a comprehensive overview of the origin, timeline and factors contributing to its prevalence among wild bird populations on the American continent.

  • This is an open-access article distributed under the terms of the Creative Commons Attribution License. This article was made open access via a Publish and Read agreement between the Microbiology Society and the corresponding author’s institution.
Loading

Article metrics loading...

/content/journal/jgv/10.1099/jgv.0.002081
2025-04-25
2026-02-07

Metrics

Loading full text...

Full text loading...

/deliver/fulltext/jgv/106/4/jgv002081.html?itemId=/content/journal/jgv/10.1099/jgv.0.002081&mimeType=html&fmt=ahah

References

  1. Krauss S, Webster RG. Avian influenza virus surveillance and wild birds: past and present. Avian Dis 2010; 54:394–398 [View Article] [PubMed]
    [Google Scholar]
  2. Swayne DE, Suarez DL, Sims LD. Influenza. In Swayne DE. eds Diseases of Poultry John Wiley & Sons; 2020 pp 210–256 [View Article]
    [Google Scholar]
  3. Fodor E, Te Velthuis AJW. Structure and function of the influenza virus transcription and replication machinery. Cold Spring Harb Perspect Med 2020; 10:1–14 [View Article] [PubMed]
    [Google Scholar]
  4. Long JS, Mistry B, Haslam SM, Barclay WS. Host and viral determinants of influenza A virus species specificity. Nat Rev Microbiol 2019; 17:67–81 [View Article] [PubMed]
    [Google Scholar]
  5. Abdelwhab EM, Abdel-Moneim AS. Orthomyxoviruses. In Malik Y, Singh R, Yadav M. eds Recent Advances in Animal Virology Singapore: Springer; 2019 pp 351–378 [View Article]
    [Google Scholar]
  6. Ferhadian D, Contrant M, Printz-Schweigert A, Smyth RP, Paillart J-C et al. Structural and functional motifs in influenza virus RNAs. Front Microbiol 2018; 9:559 [View Article] [PubMed]
    [Google Scholar]
  7. Ma W. Orthomyxoviridae. In McVey S, Kennedy M, Chengappa MM, Wilkes R. eds Veterinary Microbiology John Wiley & Sons, Ltd; 2022 pp 573–588 [View Article]
    [Google Scholar]
  8. Skelton RM, Huber VC. Comparing influenza virus biology for understanding influenza d virus. Viruses 2022; 14:1036–1046 [View Article]
    [Google Scholar]
  9. Uribe M, Rodríguez-Posada ME, Ramirez-Nieto GC. Molecular evidence of orthomyxovirus presence in colombian neotropical bats. Front Microbiol 2022; 13:1–9 [View Article]
    [Google Scholar]
  10. Wang Y, Tang CY, Wan X-F. Antigenic characterization of influenza and SARS-CoV-2 viruses. Anal Bioanal Chem 2022; 414:2841–2881 [View Article] [PubMed]
    [Google Scholar]
  11. Hulo C, de Castro E, Masson P, Bougueleret L, Bairoch A et al. ViralZone: a knowledge resource to understand virus diversity. Nucleic Acids Res 2011; 39:D576–D582 [View Article]
    [Google Scholar]
  12. Russell CJ, Hu M, Okda FA. Influenza hemagglutinin protein stability, activation, and pandemic risk. Trends Microbiol 2018; 26:841–853 [View Article] [PubMed]
    [Google Scholar]
  13. Abdelwhab EM, Mettenleiter TC. Zoonotic animal influenza virus and potential mixing vessel hosts. Viruses 2023; 15:980–1017 [View Article] [PubMed]
    [Google Scholar]
  14. Harvey JA, Mullinax JM, Runge MC, Prosser DJ. The changing dynamics of highly pathogenic avian influenza H5N1: next steps for management & science in north america. Biol Conserv 2023; 282:1–11 [View Article]
    [Google Scholar]
  15. Rashid F, Xie Z, Li M, Xie Z, Luo S et al. Roles and functions of IAV proteins in host immune evasion. Front Immunol 2023; 14:1–9 [View Article]
    [Google Scholar]
  16. Becker WB. The isolation and classification of Tern virus: influenza Virus A/Tern/South Africa/1961. J Hyg 1966; 64:309–320 [View Article]
    [Google Scholar]
  17. Rowan M. Mass mortality among European common terns in South Africa in April–May 1961. Brit Birds 1962; 55:103–114
    [Google Scholar]
  18. Plaza PI, Gamarra-Toledo V, Euguí JR, Lambertucci SA. Recent changes in patterns of mammal infection with highly pathogenic avian influenza A(H5N1) virus worldwide. Emerg Infect Dis 2024; 30:444–452 [View Article] [PubMed]
    [Google Scholar]
  19. Pan American Health Organization Epidemiological Update: Avian Influenza A(H5N1) in the Americas Region; 2024 https://www.paho.org/sites/default/files/2024-11/2024-nov-15-phe-alert-avian-influenza-eng-finalpublicacion.pdf
  20. Adlhoch C, Fusaro A, Gonzales JL, Kuiken T, Mirinaviciute G et al. Avian influenza overview March – April 2023. EFSA J 2023; 21:e08039 [View Article] [PubMed]
    [Google Scholar]
  21. Suarez DL. Influenza A virus. In Swayne DE. eds Animal Influenza John Wiley & Sons; 2017 pp 3–28
    [Google Scholar]
  22. Neumann G, Kawaoka Y. Influenza viruses: molecular virology. Encycl Life Sci 20111–12 [View Article]
    [Google Scholar]
  23. Noda T. Selective genome packaging mechanisms of influenza A viruses. Cold Spring Harb Perspect Med 2021; 11:1–13 [View Article]
    [Google Scholar]
  24. Sreenivasan CC, Sheng Z, Wang D, Li F. Host range, biology, and species specificity of seven-segmented influenza viruses—a comparative review on influenza C and D. Pathogens 2021; 10:1583 [View Article] [PubMed]
    [Google Scholar]
  25. Chauhan RP, Gordon ML. An overview of influenza A virus genes, protein functions, and replication cycle highlighting important updates. Virus Genes 2022; 58:255–269 [View Article]
    [Google Scholar]
  26. Vasin A, Temkina O, Egorov V, Klotchenko S, Plotnikova M et al. Molecular mechanisms enhancing the proteome of influenza A viruses: an overview of recently discovered proteins. Virus Res 2014; 185:53–63 [View Article]
    [Google Scholar]
  27. Dubois J, Terrier O, Rosa-Calatrava M. Influenza viruses and mrna splicing: doing more with less. MBio 2014; 5:1–13 [View Article]
    [Google Scholar]
  28. Muraki Y, Hongo S. The molecular virology and reverse genetics of influenza C virus. Jpn J Infect Dis 2010; 63:157–165 [View Article]
    [Google Scholar]
  29. Yu J, Li F, Wang D. The first decade of research advances in influenza D virus. J Gen Virol 2021; 102:1–14 [View Article]
    [Google Scholar]
  30. Sederdahl BK, Williams JV. Epidemiology and clinical characteristics of influenza C virus. Viruses 2020; 12:89 [View Article]
    [Google Scholar]
  31. Sheng Z, Liu R, Yu J, Ran Z, Newkirk SJ et al. Identification and characterization of viral defective RNA genomes in influenza B virus. J Gen Virol 2018; 99:475 [View Article]
    [Google Scholar]
  32. Koutsakos M, Nguyen TH, Barclay WS, Kedzierska K. Knowns and unknowns of influenza B viruses. Future Microbiol 2016; 11:119–135 [View Article]
    [Google Scholar]
  33. Chen W, Calvo PA, Malide D, Gibbs J, Schubert U et al. A novel influenza A virus mitochondrial protein that induces cell death. Nat Med 2001; 7:1306–1312 [View Article]
    [Google Scholar]
  34. Wise HM, Foeglein A, Sun J, Dalton RM, Patel S et al. A complicated message: identification of A novel PB1-related protein translated from influenza A virus segment 2 mRNA. J Virol 2009; 83:8021–8031 [View Article] [PubMed]
    [Google Scholar]
  35. Jagger B, Wise H, Kash J, Walters K-A, Wills N et al. An overlapping protein-coding region in influenza A virus segment 3 modulates the host response. Science 2012; 337:199–204 [View Article]
    [Google Scholar]
  36. Muramoto Y, Noda T, Kawakami E, Akkina R, Kawaoka Y. Identification of novel influenza A virus proteins translated from PA mRNA. J Virol 2013; 87:2455–2462 [View Article] [PubMed]
    [Google Scholar]
  37. Wise HM, Hutchinson EC, Jagger BW, Stuart AD, Kang ZH et al. Identification of a novel splice variant form of the influenza A virus M2 ion channel with an antigenically distinct ectodomain. PLoS Pathog 2012; 8:e1002998 [View Article] [PubMed]
    [Google Scholar]
  38. Selman M, Dankar SK, Forbes NE, Jia J-J, Brown EG. Adaptive mutation in influenza A virus non-structural gene is linked to host switching and induces a novel protein by alternative splicing. Emerg Microbes Infect 2012; 1:e42 [View Article] [PubMed]
    [Google Scholar]
  39. Visher E, Whitefield SE, McCrone JT, Fitzsimmons W, Lauring AS. The mutational robustness of influenza A virus. PLoS Pathog 2016; 12:e1005856 [View Article] [PubMed]
    [Google Scholar]
  40. Kim Y-I, Pascua PNQ, Kwon H-I, Lim G-J, Kim E-H et al. Pathobiological features of a novel, highly pathogenic avian influenza A (H5N8) virus. Emerg Microbes Infect 2014; 3:e75 [View Article] [PubMed]
    [Google Scholar]
  41. Barr J, Fearns R. Genetic instability of RNA viruses. In Kocalchuk I, Kovalchuk O. eds Genome Stability: From Virus to Human Application Elsevier; 2016 pp 21–35 [View Article]
    [Google Scholar]
  42. Byrd-Leotis L, Cummings RD, Steinhauer DA. The interplay between the host receptor and influenza virus hemagglutinin and neuraminidase. Int J Mol Sci 2017; 18:1541 [View Article]
    [Google Scholar]
  43. Pauly MD, Procario MC, Lauring AS. A novel twelve class fluctuation test reveals higher than expected mutation rates for influenza A viruses. Elife 2017; 6:1–18 [View Article]
    [Google Scholar]
  44. Suttie A, Deng Y-M, Greenhill AR, Dussart P, Horwood PF et al. Inventory of molecular markers affecting biological characteristics of avian influenza A viruses. Virus Genes 2019; 55:739–768 [View Article]
    [Google Scholar]
  45. Mänz B, Schwemmle M, Brunotte L. Adaptation of avian influenza A virus polymerase in mammals to overcome the host species barrier. J Virol 2013; 87:7200–7209 [View Article]
    [Google Scholar]
  46. Shao W, Li X, Goraya MU, Wang S, Chen J-L. Evolution of influenza A virus by mutation and re-assortment. Int J Mol Sci 2017; 18:1–13 [View Article] [PubMed]
    [Google Scholar]
  47. Behboudi S. Alphainfluenzavirus Influenzae CABI Compend; 2023 [View Article]
    [Google Scholar]
  48. Sato K, Tanabe T, Ohya M. How to classify influenza A viruses and understand their severity. Open Syst Inf Dyn 2010; 17:297–310 [View Article]
    [Google Scholar]
  49. Xu Y, Wojtczak D. Dive into machine learning algorithms for influenza virus host prediction with hemagglutinin sequences. Biosystems 2022; 220:104740 [View Article] [PubMed]
    [Google Scholar]
  50. Russell CJ. Hemagglutinin stability and its impact on influenza A virus infectivity, pathogenicity, and transmissibility in avians, mice, swine, seals, ferrets, and humans. Viruses 2021; 13:746 [View Article]
    [Google Scholar]
  51. Shi Y, Wu Y, Zhang W, Qi J, Gao GF. Enabling the “host jump”: structural determinants of receptor-binding specificity in influenza A viruses. Nat Rev Microbiol 2014; 12:822–831 [View Article] [PubMed]
    [Google Scholar]
  52. Karakus U, Mena I, Kottur J, El Zahed SS, Seoane R et al. H19 influenza A virus exhibits species-specific MHC class II receptor usage. Cell Host Microbe 2024; 32:1089–1102 [View Article] [PubMed]
    [Google Scholar]
  53. Karamendin K, Kydyrmanov A, Fereidouni S. Has avian influenza virus H9 originated from a bat source?. Front Vet Sci 2024; 10:1–6 [View Article]
    [Google Scholar]
  54. Benton DJ, Wharton SA, Martin SR, McCauley JW. Role of neuraminidase in influenza A(H7N9) virus receptor binding. J Virol 2017; 91:e02293–16 [View Article]
    [Google Scholar]
  55. McAuley JL, Gilbertson BP, Trifkovic S, Brown LE, McKimm-Breschkin JL. Influenza virus neuraminidase structure and functions. Front Microbiol 2019; 10:39 [View Article] [PubMed]
    [Google Scholar]
  56. Mair CM, Ludwig K, Herrmann A, Sieben C. Receptor binding and pH stability — how influenza A virus hemagglutinin affects host-specific virus infection. Biochim Biophys Acta - Biomem 2014; 1838:1153–1168 [View Article]
    [Google Scholar]
  57. de Bruin ACM, Funk M, Spronken MI, Gultyaev AP, Fouchier RAM et al. Hemagglutinin subtype specificity and mechanisms of highly pathogenic avian influenza virus genesis. Viruses 2022; 14:1566 [View Article]
    [Google Scholar]
  58. Kuchipudi SV, Tellabati M, Sebastian S, Londt BZ, Jansen C et al. Highly pathogenic avian influenza virus infection in chickens but not ducks is associated with elevated host immune and pro-inflammatory responses. Vet Res 2014; 45:118 [View Article] [PubMed]
    [Google Scholar]
  59. Guan M, Deliberto TJ, Feng A, Zhang J, Li T et al. Neu5Gc binding loss of subtype H7 influenza A virus facilitates adaptation to gallinaceous poultry following transmission from waterbirds but restricts spillback. Microbiology [View Article]
    [Google Scholar]
  60. Takahashi T, Takano M, Kurebayashi Y, Masuda M, Kawagishi S et al. N-glycolylneuraminic acid on human epithelial cells prevents entry of influenza A viruses that possess N-glycolylneuraminic acid binding ability. J Virol 2014; 88:8445–8456 [View Article] [PubMed]
    [Google Scholar]
  61. Nelli RK, Kuchipudi SV, White GA, Perez BB, Dunham SP et al. Comparative distribution of human and avian type sialic acid influenza receptors in the pig. BMC Vet Res 2010; 6:1–9 [View Article] [PubMed]
    [Google Scholar]
  62. Kuchipudi SV, Nelli R, White GA, Bain M, Chang KC et al. Differences in influenza virus receptors in chickens and ducks: implications for interspecies transmission. J Mol Genet Med 2009; 3:143–151 [View Article] [PubMed]
    [Google Scholar]
  63. Lycett SJ, Duchatel F, Digard P. A brief history of bird flu. Philos Trans R Soc Lond B Biol Sci 2019; 374:20180257 [View Article] [PubMed]
    [Google Scholar]
  64. Swayne DE, Sims LD. Avian influenza. In Metwally S, El Idrissi A, Viljoen G. eds Veterinary Vaccines: Principles and Applications The Food and Agriculture Organization of the United Nations and - John Wiley & Sons; 2021 pp 229–251 [View Article]
    [Google Scholar]
  65. Lee D-H, Criado MF, Swayne DE. Pathobiological origins and evolutionary history of highly pathogenic avian influenza viruses. Cold Spring Harb Perspect Med 2021; 11:a038679 [View Article] [PubMed]
    [Google Scholar]
  66. Thompson AJ, Paulson JC. Adaptation of influenza viruses to human airway receptors. J Biol Chem 2021; 296:100017 [View Article] [PubMed]
    [Google Scholar]
  67. Dou D, Revol R, Östbye H, Wang H, Daniels R. Influenza A virus cell entry, replication, virion assembly, and movement. Front Immunol 2018; 9:1581 [View Article] [PubMed]
    [Google Scholar]
  68. Zhao M, Wang L, Li S. Influenza A virus–host protein interactions control viral pathogenesis. IJMS 2017; 18:1673 [View Article]
    [Google Scholar]
  69. McDonald SM, Nelson MI, Turner PE, Patton JT. Reassortment in segmented RNA viruses: mechanisms and outcomes. Nat Rev Microbiol 2016; 14:448–460 [View Article] [PubMed]
    [Google Scholar]
  70. Du R, Cui Q, Chen Z, Zhao X, Lin X et al. Revisiting influenza A virus life cycle from A perspective of genome balance. Virologica Sinica 2023; 38:1–8 [View Article]
    [Google Scholar]
  71. Stubbs TM, Te Velthuis AJ. The RNA-dependent RNA polymerase of the influenza A virus. Future Virol 2014; 9:863–876 [View Article]
    [Google Scholar]
  72. Gerber M, Isel C, Moules V, Marquet R. Selective packaging of the influenza A genome and consequences for genetic reassortment. Trends Microbiol 2014; 22:446–455 [View Article]
    [Google Scholar]
  73. AbuBakar U, Amrani L, Kamarulzaman FA, Karsani SA, Hassandarvish P et al. Avian influenza virus tropism in humans. Viruses 2023; 15:1–27 [View Article]
    [Google Scholar]
  74. Nguyen NL, Wu W, Panté N. Contribution of the nuclear localization sequences of influenza A nucleoprotein to the nuclear import of the influenza genome in infected cells. Viruses 2023; 15:1–19 [View Article]
    [Google Scholar]
  75. Fukuyama S, Kawaoka Y. The pathogenesis of influenza virus infections: the contributions of virus and host factors. Curr Opin Immunol 2011; 23:481–486 [View Article]
    [Google Scholar]
  76. Nuñez IA, Ross TM. A review of h5nx avian influenza viruses. Ther Adv Vaccines Immunother 2019; 7:1–6 [View Article]
    [Google Scholar]
  77. Causey D, Edwards SV. Ecology of avian influenza virus in birds. J Infect Dis 2008; 197:S29–S33 [View Article]
    [Google Scholar]
  78. Somveille M, Manica A, Butchart SH, Rodrigues AS. Mapping global diversity patterns for migratory birds. PloS One 2013 [View Article]
    [Google Scholar]
  79. Stallknecht DE, Brown JD. Wild bird infections and the ecology of avian influenza viruses. In Swayne DE. eds Animal Influenza John Wiley & Sons; 2017 pp 3–28 [View Article]
    [Google Scholar]
  80. Farahat RA, Khan SH, Rabaan AA, Al-Tawfiq JA. The resurgence of avian influenza and human infection: a brief outlook. New Microbes New Infect 2023; 53:101122 [View Article] [PubMed]
    [Google Scholar]
  81. Sonnberg S, Webby RJ, Webster RG. Natural history of highly pathogenic avian influenza H5N1. Virus Res 2013; 178:63–77 [View Article] [PubMed]
    [Google Scholar]
  82. Shriner SA, Root JJ. A review of avian influenza A virus associations in synanthropic birds. Viruses 2020; 12:1209 [View Article] [PubMed]
    [Google Scholar]
  83. Shinya K, Makino A, Ozawa M, Kim JH, Sakai-Tagawa Y et al. Ostrich involvement in the selection of H5N1 influenza virus possessing mammalian-type amino acids in the PB2 protein. J Virol 2009; 83:13015–13018 [View Article] [PubMed]
    [Google Scholar]
  84. Hill NJ, Bishop MA, Trovão NS, Ineson KM, Schaefer AL et al. Ecological divergence of wild birds drives avian influenza spillover and global spread. PLoS Pathog 2022; 18:e1010062 [View Article] [PubMed]
    [Google Scholar]
  85. Yoon S-W, Webby RJ, Webster RG. Evolution and ecology of influenza A viruses. In Compans RW. eds Influenza Pathogenesis and Control-Volume I Springer Cham; 2014 pp 359–375 [View Article]
    [Google Scholar]
  86. Bodewes R, Kuiken T. Changing role of wild birds in the epidemiology of avian influenza A viruses. In Keilian M, Mettenleiter TC, Roossinck MJ. eds Advances in Virus Research vol 100 2018 pp 279–307 [View Article] [PubMed]
    [Google Scholar]
  87. Vandegrift KJ, Sokolow SH, Daszak P, Kilpatrick AM. Ecology of avian influenza viruses in a changing world. Ann N Y Acad Sci 2010; 1195:113–128 [View Article] [PubMed]
    [Google Scholar]
  88. Verhagen JH, Lexmond P, Vuong O, Schutten M, Guldemeester J et al. Discordant detection of avian influenza virus subtypes in time and space between poultry and wild birds; towards improvement of surveillance programs. PLoS One 2017; 12:e0173470 [View Article] [PubMed]
    [Google Scholar]
  89. Fereidouni S, Starick E, Karamendin K, Genova CD, Scott SD et al. Genetic characterization of a new candidate hemagglutinin subtype of influenza A viruses. Emerg Microbes Infect 2023; 12:2225645 [View Article] [PubMed]
    [Google Scholar]
  90. Lu L, Lycett SJ, Leigh Brown AJ. Reassortment patterns of avian influenza virus internal segments among different subtypes. BMC Evol Biol 2014; 14:1–15 [View Article] [PubMed]
    [Google Scholar]
  91. Taubenberger JK, Kash JC. Influenza virus evolution, host adaptation, and pandemic formation. Cell Host Microbe 2010; 7:440–451 [View Article]
    [Google Scholar]
  92. Kosik I, Yewdell JW. Influenza hemagglutinin and neuraminidase: yin–yang proteins coevolving to thwart immunity. Viruses 2019; 11:1–20 [View Article]
    [Google Scholar]
  93. Marco MA, Sharshov K, Gulyaeva M, Delogu M, Ciccarese L et al. Ecology of avian influenza viruses in Siberia. In Robbins T. eds Siberia: Ecology, Diversity and Environmental Impact Nova Science Publishers: Siberia; 2016 pp 83–160
    [Google Scholar]
  94. Steel J, Lowen AC. Influenza A virus reassortment. In Compans RW. eds Influenza Pathogenesis and Control-Volume I Springer Cham; 2014 pp 377–401 [View Article]
    [Google Scholar]
  95. Chen X, Li C, Sun H-T, Ma J, Qi Y et al. Prevalence of avian influenza viruses and their associated antibodies in wild birds in China: a systematic review and meta-analysis. Microb Pathog 2019; 135:103613 [View Article]
    [Google Scholar]
  96. Mine J, Uchida Y, Sharshov K, Sobolev I, Shestopalov A et al. Phylogeographic evidence for the inter- and intracontinental dissemination of avian influenza viruses via migration flyways. PLoS One 2019; 14:e0218506 [View Article] [PubMed]
    [Google Scholar]
  97. Bevins SN, Shriner SA, Cumbee JC Jr, Dilione KE, Douglass KE et al. Intercontinental movement of highly pathogenic avian influenza A(H5N1) clade 2.3.4.4 virus to the United States, 2021. Emerg Infect Dis 2022; 28:1006–1011 [View Article]
    [Google Scholar]
  98. Prosser DJ, Chen J, Ahlstrom CA, Reeves AB, Poulson RL et al. Maintenance and dissemination of avian-origin influenza A virus within the northern Atlantic Flyway of North America. PLoS Pathog 2022; 18:e1010605 [View Article]
    [Google Scholar]
  99. Morgan IR, Westbury HA. Studies of viruses in penguins in the Vestfold Hills. Hydrobiologia 1988; 165:263–269 [View Article]
    [Google Scholar]
  100. Morgan IR, Westbury HA. Virological studies of Adelie Penguins (Pygoscelis adeliae) in Antarctica. Avian Dis 1981; 25:1019–1026 [View Article] [PubMed]
    [Google Scholar]
  101. de Seixas MMM, de Araújo J, Krauss S, Fabrizio T, Walker D et al. H6N8 avian influenza virus in Antarctic seabirds demonstrates connectivity between South America and Antarctica. Transbound Emerg Dis 2022; 69:e3436–e3446 [View Article] [PubMed]
    [Google Scholar]
  102. Hurt AC, Vijaykrishna D, Butler J, Baas C, Maurer-Stroh S et al. Detection of evolutionarily distinct avian influenza A viruses in antarctica. mBio 2014; 5:e01098–14 [View Article] [PubMed]
    [Google Scholar]
  103. Banyard AC, Bennison A, Byrne AMP, Reid SM, Lynton-Jenkins JG et al. Detection and spread of high pathogenicity avian influenza virus H5N1 in the Antarctic Region. Nat Commun 2024; 15:7433 [View Article] [PubMed]
    [Google Scholar]
  104. Caron A, Cappelle J, Cumming GS, de Garine-Wichatitsky M, Gaidet N. Bridge hosts, a missing link for disease ecology in multi-host systems. Vet Res 2015; 46:83 [View Article] [PubMed]
    [Google Scholar]
  105. Royce K. Application of a novel mathematical model to identify intermediate hosts of SARS-CoV-2. J Theor Biol 2021; 526:110761 [View Article] [PubMed]
    [Google Scholar]
  106. Bourret V. Avian influenza viruses in pigs: an overview. Vet J 2018; 239:7–14 [View Article]
    [Google Scholar]
  107. Bogs J, Kalthoff D, Veits J, Pavlova S, Schwemmle M et al. Reversion of PB2-627E to-627K during replication of an H5N1 clade 2.2 virus in mammalian hosts depends on the origin of the nucleoprotein. J Virol 2011; 85:10691–10698 [View Article]
    [Google Scholar]
  108. Thanawongnuwech R, Amonsin A, Tantilertcharoen R, Damrongwatanapokin S, Theamboonlers A et al. Probable tiger-to-tiger transmission of avian influenza H5N1. Emerg Infect Dis 2005; 11:699–701 [View Article]
    [Google Scholar]
  109. Lee Y-N, Lee D-H, Cheon S-H, Park Y-R, Baek Y-G et al. Genetic characteristics and pathogenesis of H5 low pathogenic avian influenza viruses from wild birds and domestic ducks in South Korea. Sci Rep 2020; 10:12151 [View Article] [PubMed]
    [Google Scholar]
  110. Veits J, Weber S, Stech O, Breithaupt A, Gräber M et al. Avian influenza virus hemagglutinins H2, H4, H8, and H14 support a highly pathogenic phenotype. Proc Natl Acad Sci USA 2012; 109:2579–2584 [View Article]
    [Google Scholar]
  111. Nabil NM, Erfan AM, Tawakol MM, Haggag NM, Naguib MM et al. Wild birds in live bird markets: potential reservoirs of enzootic avian influenza viruses and antimicrobial-resistant Enterobacteriaceae in northern Egypt. Pathogens 2020; 9:196 [View Article] [PubMed]
    [Google Scholar]
  112. Xie R, Edwards KM, Wille M, Wei X, Wong S-S et al. The episodic resurgence of highly pathogenic avian influenza H5 virus. Nature 2023; 622:810–817 [View Article] [PubMed]
    [Google Scholar]
  113. Piasecka J, Jarmolowicz A, Kierzek E. Organization of the influenza A virus genomic RNA in the viral replication cycle—structure, interactions, and implications for the emergence of new strains. Pathogens 2020; 9:951–961 [View Article] [PubMed]
    [Google Scholar]
  114. Chen K-Y, Karuppusamy J, O’Neill MB, Opuu V, Bahin M et al. High-throughput droplet-based analysis of influenza A virus genetic reassortment by single-virus RNA sequencing. Proc Natl Acad Sci USA 2023; 120:e2211098120 [View Article] [PubMed]
    [Google Scholar]
  115. Hutchinson EC, von Kirchbach JC, Gog JR, Digard P. Genome packaging in Influenza A virus. J Gen Virol 2010; 91:313–328 [View Article] [PubMed]
    [Google Scholar]
  116. White MC, Lowen AC. Implications of segment mismatch for influenza A virus evolution. J Gen Virol 2018; 99:3–16 [View Article] [PubMed]
    [Google Scholar]
  117. Cui Y, Li Y, Li M, Zhao L, Wang D et al. Evolution and extensive reassortment of H5 influenza viruses isolated from wild birds in China over the past decade. Emerg Microbes Infect 2020; 9:1793–1803 [View Article]
    [Google Scholar]
  118. Chen H, Li Y, Li Z, Shi J, Shinya K et al. Properties and dissemination of H5N1 viruses isolated during an influenza outbreak in migratory waterfowl in western China. J Virol 2006; 80:5976–5983 [View Article]
    [Google Scholar]
  119. Guan Y, Shortridge KF, Krauss S, Webster RG. Molecular characterization of H9N2 influenza viruses: were they the donors of the “internal” genes of H5N1 viruses in Hong Kong?. Proc Natl Acad Sci USA 1999; 96:9363–9367 [View Article]
    [Google Scholar]
  120. Antigua KJC, Choi W-S, Baek YH, Song M-S. The emergence and decennary distribution of clade 2.3.4.4 HPAI H5Nx. Microorganisms 2019; 7:156 [View Article] [PubMed]
    [Google Scholar]
  121. Marandino A, Tomás G, Panzera Y, Leizagoyen C, Pérez R et al. Spreading of the high-pathogenicity avian influenza (H5N1) virus of clade 2.3.4.4b into Uruguay. Viruses 2023; 15:1906 [View Article] [PubMed]
    [Google Scholar]
  122. Tosh C, Nagarajan S, Murugkar HV, Bhatia S, Kulkarni DD. Evolution and spread of avian influenza H5N1 viruses. Adv Anim Vet Sci 2014; 2:33–41 [View Article]
    [Google Scholar]
  123. Yao-Tsun L. Emergence and Evolution of Reassortant Highly Pathogenic H5 Avian Influenza Viruses. Doctoral dissertation National University of Singapore; Singapore, China: 2021
    [Google Scholar]
  124. CDC 1880-1959 Highlights in the History of Avian Influenza (Bird Flu) Timeline. n.d https://www.cdc.gov/bird-flu/avian-timeline/1880-1959.html accessed 16 September 2023
  125. Charostad J, Rezaei Zadeh Rukerd M, Mahmoudvand S, Bashash D, Hashemi SMA et al. A comprehensive review of highly pathogenic avian influenza (HPAI) H5N1: an imminent threat at doorstep. Travel Med Infect Dis 2023; 55:102638 [View Article] [PubMed]
    [Google Scholar]
  126. WHO Global Influenza Programme H5N1 influenza: monthly reported cases; 2024 https://ourworldindata.org/grapher/h5n1-flu-reported-cases accessed 30 December 2024
  127. Ison MG, Marrazzo J. The emerging threat of H5N1 to human health. N Engl J Med 2025; 0:1–3 [View Article]
    [Google Scholar]
  128. CDC Genetic Sequences of Highly Pathogenic Avian Influenza A(H5N1) Viruses Identified in A Person in Louisiana; 2024 https://www.cdc.gov/bird-flu/spotlights/h5n1-response-12232024.html accessed 4 January 2025
  129. Hu X, Saxena A, Magstadt DR, Gauger PC, Burrough ER et al. Genomic characterization of highly pathogenic avian influenza A H5N1 virus newly emerged in dairy cattle. Emerg Microbes Infect 2024; 13:2380421 [View Article] [PubMed]
    [Google Scholar]
  130. Lu B, Zhou H, Ye D, Kemble G, Jin H. Improvement of influenza A/Fujian/411/02 (H3N2) virus growth in embryonated chicken eggs by balancing the hemagglutinin and neuraminidase activities, using reverse genetics. J Virol 2005; 79:6763–6771 [View Article] [PubMed]
    [Google Scholar]
  131. WHO/OIE/FAO H5N1 Evolution Working Group Toward a unified nomenclature system for highly pathogenic avian influenza virus (H5N1). Emerg Infect Dis 2008; 14:e1 [View Article] [PubMed]
    [Google Scholar]
  132. Sims LD, Brown IH. Multi-continental panzootic of H5 highly pathogenic avian influenza (1996–2015). In Swayne DE. eds Animal Influenza John Wiley & Sons; 2017 pp 202–248 [View Article]
    [Google Scholar]
  133. Smith GJD, Donis RO. World health organization/world organisation for animal health/food and agriculture organization H5 evolution working group nomenclature updates resulting from the evolution of avian influenza A(H5) virus clades 2.1.3.2a, 2.2.1, and 2.3.4 during 2013–2014. Influenza Other Respir 2015; 9:271–276 [View Article]
    [Google Scholar]
  134. Le TH, Nguyen NTB. Evolutionary dynamics of highly pathogenic avian influenza A/H5N1 HA clades and vaccine implementation in Vietnam. Clin Exp Vaccine Res 2014; 3:117 [View Article]
    [Google Scholar]
  135. Elbe S, Buckland‐Merrett G. Data, disease and diplomacy: GISAID’s innovative contribution to global health. Glob Chall 2017; 1:33–46 [View Article]
    [Google Scholar]
  136. Shi J, Zeng X, Cui P, Yan C, Chen H. Alarming situation of emerging H5 and H7 avian influenza and effective control strategies. Emerg Microbes Infect 2023; 12:2155072 [View Article] [PubMed]
    [Google Scholar]
  137. Li Y-T, Su YC, Smith GJ. H5Nx viruses emerged during the suppression of H5N1 virus populations in poultry. Microbiol Spectr 2021; 9:e01309–21 [View Article]
    [Google Scholar]
  138. Liang L, Xu B, Chen Y, Liu Y, Cao W et al. Combining spatial-temporal and phylogenetic analysis approaches for improved understanding on global H5N1 transmission. PLoS One 2010; 5:e13575 [View Article] [PubMed]
    [Google Scholar]
  139. Wang G, Zhan D, Li L, Lei F, Liu B et al. H5N1 avian influenza re-emergence of lake qinghai: phylogenetic and antigenic analyses of the newly isolated viruses and roles of migratory birds in virus circulation. J Gen Virol 2008; 89:697–702 [View Article]
    [Google Scholar]
  140. Chen J, Liang B, Hu J, Liu H, Sun J et al. Circulation, evolution and transmission of H5N8 virus, 2016–2018. J Infect 2019; 79:363–372 [View Article] [PubMed]
    [Google Scholar]
  141. Liu J, Xiao H, Lei F, Zhu Q, Qin K et al. Highly pathogenic H5N1 influenza virus infection in migratory birds. Science 2005; 309:1206 [View Article] [PubMed]
    [Google Scholar]
  142. Hu X, Liu D, Wang M, Yang L, Wang M et al. Clade 2.3.2 avian influenza virus (H5N1), Qinghai Lake region, China, 2009–2010. Emerg Infect Dis 2011; 17:560–562 [View Article] [PubMed]
    [Google Scholar]
  143. Keawcharoen J, Oraveerakul K, Kuiken T, Fouchier RAM, Amonsin A et al. Avian influenza H5N1 in tigers and leopards. Emerg Infect Dis 2004; 10:2189–2191 [View Article] [PubMed]
    [Google Scholar]
  144. Songserm T, Amonsin A, Jam-on R, Sae-Heng N, Pariyothorn N et al. Fatal avian influenza A H5N1 in A dog. Emerg Infect Dis 2006; 12:1744–1747 [View Article] [PubMed]
    [Google Scholar]
  145. Desvaux S, Marx N, Ong S, Gaidet N, Hunt M et al. Highly pathogenic avian influenza virus (H5N1) outbreak in captive wild birds and cats, Cambodia. Emerg Infect Dis 2009; 15:475–478 [View Article] [PubMed]
    [Google Scholar]
  146. Weber S, Harder T, Starick E, Beer M, Werner O et al. Molecular analysis of highly pathogenic avian influenza virus of subtype H5N1 isolated from wild birds and mammals in northern Germany. J Gen Virol 2007; 88:554–558 [View Article]
    [Google Scholar]
  147. Klopfleisch R, Wolf PU, Wolf C, Harder T, Starick E et al. Encephalitis in a stone marten (Martes foina) after natural infection with highly pathogenic avian influenza virus subtype H5N1. J Comp Pathol 2007; 137:155–159 [View Article] [PubMed]
    [Google Scholar]
  148. Sims L, Harder TC, Brown IH, Gaidet N, Belot G et al. Highly pathogenic H5 avian influenza in 2016 and early 2017-observations and future perspectives. In Food and Agriculture Organization of the United Nations - FOCUS ON FAO; 2017 pp 1–16 https://agritrop.cirad.fr/585953/1/a-i8068e.pdf
    [Google Scholar]
  149. Saito T, Tanikawa T, Uchida Y, Takemae N, Kanehira K et al. Intracontinental and intercontinental dissemination of Asian H5 highly pathogenic avian influenza virus (clade 2.3.4.4) in the winter of 2014–2015. Rev Med Virol 2015; 25:388–405 [View Article]
    [Google Scholar]
  150. Smith GJD, Fan XH, Wang J, Li KS, Qin K et al. Emergence and predominance of an H5N1 influenza variant in China. Proc Natl Acad Sci USA 2006; 103:16936–16941 [View Article] [PubMed]
    [Google Scholar]
  151. Smith GJD, Vijaykrishna D, Ellis TM, Dyrting KC, Leung YHC et al. Characterization of avian influenza viruses A (H5N1) from wild birds, Hong Kong, 2004–2008. Emerg Infect Dis 2004; 15:402–407 [View Article]
    [Google Scholar]
  152. Gu M, Liu W, Cao Y, Peng D, Wang X et al. Novel reassortant highly pathogenic avian influenza (H5N5) viruses in domestic ducks, china. Emerg Infect Dis 2011; 17:1060–1063 [View Article]
    [Google Scholar]
  153. Wu H, Peng X, Xu L, Jin C, Cheng L et al. Novel reassortant influenza A(H5N8) viruses in domestic ducks, Eastern China. Emerg Infect Dis 2014; 20:1315–1318 [View Article]
    [Google Scholar]
  154. Zhao G, Gu X, Lu X, Pan J, Duan Z et al. Novel reassortant highly pathogenic H5N2 avian influenza viruses in poultry in China. PLoS One 2012; 7:e46183 [View Article] [PubMed]
    [Google Scholar]
  155. Shchelkanov MYu, Kirillov IM, Shestopalov AM, Litvin KE, Deryabin PG et al. Evolution of influ- 245 enza A/H5N1 virus (1996-2016). Vopr Virusol 2016; 61:245–256 [View Article]
    [Google Scholar]
  156. Heine HG, Foord AJ, Wang J, Valdeter S, Walker S et al. Detection of highly pathogenic zoonotic influenza virus H5N6 by reverse-transcriptase quantitative polymerase chain reaction. Virol J 2015; 12:18 [View Article] [PubMed]
    [Google Scholar]
  157. Li Q, Wang X, Gu M, Zhu J, Hao X et al. Novel H5 clade 2.3.4.6 viruses with both α-2,3 and α-2,6 receptor binding properties may pose a pandemic threat. Vet Res 2014; 45:127 [View Article] [PubMed]
    [Google Scholar]
  158. Jeong J, Kang H-M, Lee E-K, Song B-M, Kwon Y-K et al. Highly pathogenic avian influenza virus (H5N8) in domestic poultry and its relationship with migratory birds in South Korea during 2014. Vet Microbiol 2014; 173:249–257 [View Article] [PubMed]
    [Google Scholar]
  159. El-Shesheny R, Barman S, Feeroz MM, Hasan MK, Jones-Engel L et al. Genesis of influenza A(H5N8) viruses. Emerg Infect Dis 2017; 23:1368–1371 [View Article] [PubMed]
    [Google Scholar]
  160. Shi W, Gao GF. Emerging H5N8 avian influenza viruses. Science 2021; 372:784–786 [View Article] [PubMed]
    [Google Scholar]
  161. Ma L, Jin T, Wang H, Liu H, Wang R et al. Two reassortant types of highly pathogenic H5N8 avian influenza virus from wild birds in Central China in 2016. Emerg Microbes Infect 2018; 7:1–8 [View Article]
    [Google Scholar]
  162. Motahhar M, Keyvanfar H, Shoushtari A, Fallah Mehrabadi MH, Nikbakht Brujeni G. The arrival of highly pathogenic avian influenza viruses H5N8 in iran through two windows, 2016. Virus Genes 2022; 58:527–539 [View Article]
    [Google Scholar]
  163. Li M, Liu H, Bi Y, Sun J, Wong G et al. Highly pathogenic avian influenza A(H5N8) virus in wild migratory birds, Qinghai Lake, China. Emerg Infect Dis 2017; 23:637–641 [View Article]
    [Google Scholar]
  164. Lee D-H, Bertran K, Kwon J-H, Swayne DEE. Evolution, global spread, and pathogenicity of highly pathogenic avian influenza H5Nx clade 2.3.4.4. J Vet Sci 2017; 18:269 [View Article]
    [Google Scholar]
  165. Caliendo V, Lewis NS, Pohlmann A, Baillie SR, Banyard AC et al. Transatlantic spread of highly pathogenic avian influenza H5N1 by wild birds from Europe to North America in 2021. Sci Rep 2022; 12:11729 [View Article]
    [Google Scholar]
  166. Fourment M, Darling AE, Holmes EC. The impact of migratory flyways on the spread of avian influenza virus in North America. BMC Evol Biol 2017; 17:118 [View Article] [PubMed]
    [Google Scholar]
  167. Günther A, Krone O, Svansson V, Pohlmann A, King J et al. Iceland as a stepping stone for the spread of highly pathogenic avian influenza virus between Europe and North America. Emerg Infect Dis 2022; 28:2383–2388 [View Article] [PubMed]
    [Google Scholar]
  168. Duan L, Bahl J, Smith GJD, Wang J, Vijaykrishna D et al. The development and genetic diversity of H5N1 influenza virus in China, 1996-2006. Virology 2008; 380:243–254 [View Article] [PubMed]
    [Google Scholar]
  169. Gutiérrez RA, Naughtin MJ, Horm SV, San S, Buchy P. A(H5N1) virus evolution in Southeast Asia. Viruses 2009; 1:335–361 [View Article] [PubMed]
    [Google Scholar]
  170. Vijaykrishna D, Bahl J, Riley S, Duan L, Zhang JX et al. Evolutionary dynamics and emergence of panzootic H5N1 influenza viruses. PLOS Pathog 2008; 4:e1000161 [View Article] [PubMed]
    [Google Scholar]
  171. Ramey AM, Hill NJ, DeLiberto TJ, Gibbs SEJ, Camille Hopkins M et al. Highly pathogenic avian influenza is an emerging disease threat to wild birds in North America. J Wildl Manag 2022; 86:22171–22192 [View Article]
    [Google Scholar]
  172. Lee E-K, Lee Y-N, Kye S-J, Lewis NS, Brown IH et al. Characterization of a novel reassortant H5N6 highly pathogenic avian influenza virus clade 2.3.4.4 in Korea, 2017. Emerg Microbes Infect 2018; 7:1–3 [View Article]
    [Google Scholar]
  173. Lee Y-J, Kang H-M, Lee E-K, Song B-M, Jeong J et al. Novel reassortant influenza A(H5N8) viruses, South Korea, 2014. Emerg Infect Dis 2014; 20:1086–1089 [View Article]
    [Google Scholar]
  174. Zhang J, Chen Y, Shan N, Wang X, Lin S et al. Genetic diversity, phylogeography, and evolutionary dynamics of highly pathogenic avian influenza A (H5N6) viruses. Virus Evol 2020; 6: [View Article]
    [Google Scholar]
  175. Xu W, Berhane Y, Dubé C, Liang B, Pasick J et al. Epidemiological and evolutionary inference of the transmission network of the 2014 highly pathogenic avian influenza H5N2 outbreak in British Columbia, Canada. Sci Rep 2016; 6:30858 [View Article]
    [Google Scholar]
  176. Huang C-W, Chen L-H, Lee D-H, Liu Y-P, Li W-C et al. Evolutionary history of H5 highly pathogenic avian influenza viruses (clade 2.3.4.4c) circulating in taiwan during 2015–2018. Infect Genet Evol 2021 [View Article]
    [Google Scholar]
  177. Lin S, Chen J, Li K, Liu Y, Fu S et al. Evolutionary dynamics and comparative pathogenicity of clade 2.3.4.4b H5 subtype avian influenza viruses, China, 2021–2022. Virol Sin 2024; 39:358–368 [View Article]
    [Google Scholar]
  178. Poen MJ, Bestebroer TM, Vuong O, Scheuer RD, Jeugd HP et al. Local amplification of highly pathogenic avian influenza H5N8 viruses in wild birds in the netherlands, 2016 to 2017. Euro Surveill 2018; 23:17–00449 [View Article]
    [Google Scholar]
  179. Ghafouri SA, Fallah Mehrabadi MH, Talakesh SF, Hosseini H, Ziafati Z et al. Full genome characterization of Iranian H5N8 highly pathogenic avian influenza virus from Hooded Crow (Corvus cornix), 2017: The first report. Comp Immunol Microbiol Infect Dis 2019; 64:73–80 [View Article] [PubMed]
    [Google Scholar]
  180. Lee Y-N, Lee E-K, Song B-M, Heo G-B, Woo S-H et al. Evaluation of the zoonotic potential of multiple subgroups of clade 2.3. 4.4 influenza A (H5N8) virus. Virology 2018; 516:38–45 [View Article]
    [Google Scholar]
  181. Leyson CM, Youk S, Ferreira HL, Suarez DL, Pantin-Jackwood M. Multiple gene segments are associated with enhanced virulence of clade 2.3.4.4 H5N8 highly pathogenic avian influenza virus in mallards. J Virol 2021; 95:e0095521 [View Article] [PubMed]
    [Google Scholar]
  182. Marchenko V, Goncharova N, Susloparov I, Kolosova N, Gudymo A et al. Isolation and characterization of h5nx highly pathogenic avian influenza viruses of clade 2.3. 4.4 in russia. Virology 2018; 525:216–223 [View Article]
    [Google Scholar]
  183. Claes F, Morzaria SP, Donis RO. Emergence and dissemination of clade 2.3.4.4 h5nx influenza viruses — how is the asian HPAI H5 lineage maintained. Curr Opin Virol 2016; 16:158–163 [View Article]
    [Google Scholar]
  184. Youk S, Torchetti MK, Lantz K, Lenoch JB, Killian ML et al. H5N1 highly pathogenic avian influenza clade 2.3.4.4b in wild and domestic birds: Introductions into the United States and reassortments, December 2021–April 2022. Virology 2023; 587:109860 [View Article]
    [Google Scholar]
  185. BirdLife International n.d http://datazone.birdlife.org/home accessed 4 July 2024
  186. Pasick J, Berhane Y, Joseph T, Bowes V, Hisanaga T et al. Reassortant highly pathogenic influenza A H5N2 virus containing gene segments related to Eurasian H5N8 in British Columbia, Canada, 2014. Sci Rep 2014; 5:9484 [View Article]
    [Google Scholar]
  187. Murti M, Skowronski D, Lem M, Fung C, Klar S et al. Public health response to outbreaks of avian influenza A(H5N2) and (H5N1) among poultry. Commun Dis Rep 2014; 41:69–72 [View Article]
    [Google Scholar]
  188. Ip HS, Torchetti MK, Crespo R, Kohrs P, DeBruyn P et al. Novel Eurasian highly pathogenic avian influenza A H5 viruses in wild birds, Washington, USA, 2014. Emerg Infect Dis 2015; 21:886–890 [View Article]
    [Google Scholar]
  189. Jhung MA, Nelson DI. Outbreaks of avian influenza A (H5N2), (H5N8), and (H5N1) among birds — united states. Mortal Wkly Rep 2014; PMID:111 [PubMed]
    [Google Scholar]
  190. Lee D-H, Torchetti MK, Hicks J, Killian ML, Bahl J et al. Transmission dynamics of highly pathogenic avian influenza virus A(H5Nx) clade 2.3.4.4, North America, 2014–2015. Emerg Infect Dis 2018; 24:1840–1848 [View Article]
    [Google Scholar]
  191. Torchetti MK, Killian ML, Dusek RJ, Pedersen JC, Hines N et al. Novel H5 clade 2.3.4.4 reassortant (H5N1) virus from a green-winged teal in Washington, USA. Genome Announc 2015; 3:e00195-15 [View Article] [PubMed]
    [Google Scholar]
  192. USDA Final Report for the 2014–2015 Outbreak of Highly Pathogenic Avian Influenza (HPAI) in the United States; 2016 https://www.aphis.usda.gov/media/document/2086/file accessed 12 December 2024
  193. USDA Highly Pathogenic H5 Avian Influenza Confirmed in Wild Birds in Washington State H5N2 Found in Northern Pintail Ducks & H5N8 Found in Captive Gyrfalcons; 2014 https://www.usda.gov/about-usda/news/press-releases/2014/12/17/highly-pathogenic-h5-avian-influenza-confirmed-wild-birds-washington-state-h5n2-found-northern accessed 12 December 2024
  194. Lee D-H, Torchetti MK, Killian ML, DeLiberto TJ, Swayne DE. Reoccurrence of avian influenza A(H5N2) virus clade 2.3.4.4 in wild birds, Alaska, USA, 2016. Emerg Infect Dis 2017; 23:365–367 [View Article] [PubMed]
    [Google Scholar]
  195. Lee D-H, Torchetti MK, Winker K, Ip HS, Song C-S et al. Intercontinental spread of Asian-origin H5N8 to North America through Beringia by migratory birds. J Virol 2015; 89:6521–6524 [View Article] [PubMed]
    [Google Scholar]
  196. Song B-M, Lee E-K, Lee Y-N, Heo G-B, Lee H-S et al. Phylogeographical characterization of H5N8 viruses isolated from poultry and wild birds during 2014–2016 in South Korea. J Vet Sci 2017; 18:89 [View Article]
    [Google Scholar]
  197. Napp S, Majó N, Sánchez-Gónzalez R, Vergara-Alert J. Emergence and spread of highly pathogenic avian influenza A(H5N8) in Europe in 2016-2017. Transbound Emerg Dis 2018; 65:1217–1226 [View Article]
    [Google Scholar]
  198. Beerens N, Heutink R, Bergervoet SA, Harders F, Bossers A et al. Multiple reassorted viruses as cause of highly pathogenic avian influenza A(H5N8) virus epidemic, the Netherlands, 2016. Emerg Infect Dis 2017; 23:1974–1981 [View Article]
    [Google Scholar]
  199. Bergervoet SA, Ho CKY, Heutink R, Bossers A, Beerens N. Spread of highly pathogenic avian influenza (HPAI) H5N5 viruses in Europe in 2016–2017 appears related to the timing of reassortment events. Viruses 2019; 11:501 [View Article] [PubMed]
    [Google Scholar]
  200. Khomenko S, Abolnik C, Roberts L, Waller L, Shaw K et al. Spread of H5N8 highly pathogenic avian influenza (HPAI) in sub-Saharan Africa: epidemiological and ecological observations. Food and Agriculture Organization of the United Nations - FOCUS ON; 2016 pp 1–20 https://openknowledge.fao.org/items/9232d542-8c87-4a74-9ed4-8130907d5fb6/full
  201. Food and Agriculture Organization of the United Nations H5N8 HPAI in Uganda Further Spread in Uganda and Neighbouring Countries (February 2017); 2017 https://docslib.org/doc/13405346/h5n8-hpai-in-uganda-further-spread-in-uganda-and neighbouring-countries-february-2017 accessed 17 June 2024
  202. Li H, Li Q, Li B, Guo Y, Xing J et al. Continuous reassortment of clade 2.3.4.4 H5N6 highly pathogenic avian influenza viruses demonstrating high risk to public health. Pathogens 2020; 9:670 [View Article]
    [Google Scholar]
  203. Global Consortium for H5N8 and Related Influenza Viruses Role for migratory wild birds in the global spread of avian influenza H5N8. Science 2016; 354:213–217 [View Article] [PubMed]
    [Google Scholar]
  204. Gu W, Shi J, Cui P, Yan C, Zhang Y et al. Novel H5N6 reassortants bearing the clade 2.3.4.4b HA gene of H5N8 virus have been detected in poultry and caused multiple human infections in China. Emerg Microbes Infect 2022; 11:1174–1185 [View Article] [PubMed]
    [Google Scholar]
  205. Kwon J-H, Bertran K, Lee D-H, Criado MF, Killmaster L et al. Diverse infectivity, transmissibility, and pathobiology of clade 2.3.4.4 H5Nx highly pathogenic avian influenza viruses in chickens. Emerg Microbes Infect 2023; 12:1–10 [View Article]
    [Google Scholar]
  206. Yang Q, Xue X, Zhang Z, Wu MJ, Ji J et al. Clade 2.3.4.4b H5N8 Subtype Avian Influenza Viruses Were Identified from the Common Crane Wintering in Yunnan Province, China. Viruses 2022; 15:38 [View Article] [PubMed]
    [Google Scholar]
  207. World Health Organization Antigenic and genetic characteristics of zoonotic influenza viruses and development of candidate vaccine viruses for pandemic preparedness. Wkly Epidemiol Rec Relevé Épidémiologique Hebd 2020525–539
    [Google Scholar]
  208. Graziosi G, Lupini C, Catelli E, Carnaccini S. Highly pathogenic avian influenza (HPAI) H5 clade 2.3.4.4b virus infection in birds and mammals. Animals 2024; 14:1372 [View Article]
    [Google Scholar]
  209. Brown I, Kuiken T, Mulatti P, Smietanka K, Staubach C et al. Avian influenza overview September – November 2017. EFSA J 2017; 15:e05141 [View Article] [PubMed]
    [Google Scholar]
  210. European Food Safety Authority EURL for AI. European centre for disease prevention, control. EFSA J 2021 [View Article]
    [Google Scholar]
  211. James J, Billington E, Warren CJ, De Sliva D, Di Genova C et al. Clade 2.3.4.4b H5N1 high pathogenicity avian influenza virus (HPAIV) from the 2021/22 epizootic is highly duck adapted and poorly adapted to chickens. J Gen Virol 2023; 104:001852 [View Article] [PubMed]
    [Google Scholar]
  212. Gass JD, Kellogg HK, Hill NJ, Puryear WB, Nutter FB et al. Epidemiology and ecology of influenza A viruses among wildlife in the Arctic. Viruses 2022; 14:1531 [View Article] [PubMed]
    [Google Scholar]
  213. Erdelyan CNG, Kandeil A, Signore AV, Jones MEB, Vogel P et al. Multiple transatlantic incursions of highly pathogenic avian influenza clade 2.3.4.4b A(H5N5) virus into North America and spillover to mammals. Cell Rep 2024; 43:114479 [View Article] [PubMed]
    [Google Scholar]
  214. Alkie TN, Lopes S, Hisanaga T, Xu W, Suderman M et al. A threat from both sides: multiple introductions of genetically distinct H5 HPAI viruses into Canada via both East Asia-Australasia/Pacific and Atlantic flyways. Virus Evol 2022; 8:veac077 [View Article] [PubMed]
    [Google Scholar]
  215. Navarro-López R, Alcazar CJ, Guillen AM, Piña HJ, Flores EB et al. Avance IA - influenza aviar. CPA-DINESA 2023; 1:1–24
    [Google Scholar]
  216. Pan American Health Organization Epidemiological Update: Outbreaks of avian influenza caused by influenza A(H5N1) in the Region of the Americas; 2023 https://www.paho.org/en/documents/epidemiological-update-outbreaks-avian-influenza-caused-influenza-ah5n1-region-americas accessed 20 May 2023
  217. Ospina-Jimenez AF, Gomez AP, Osorio-Zambrano WF, Alvarez-Munoz S, Ramirez-Nieto GC. Sequence-based epitope mapping of high pathogenicity avian influenza H5 clade 2.3.4.4b in Latin America. Front Vet Sci 2024; 11:1347509 [View Article] [PubMed]
    [Google Scholar]
  218. Araujo J, Petry MV, Fabrizio T, Walker D, Ometto T et al. Migratory birds in southern Brazil are a source of multiple avian influenza virus subtypes. Influenza Other Respir Viruses 2018; 12:220–231 [View Article] [PubMed]
    [Google Scholar]
  219. Viseshakul N, Thanawongnuwech R, Amonsin A, Suradhat S, Payungporn S et al. The genome sequence analysis of H5N1 avian influenza A virus isolated from the outbreak among poultry populations in Thailand. Virology 2004; 328:169–176 [View Article] [PubMed]
    [Google Scholar]
  220. Li KS, Guan Y, Wang J, Smith GJD, Xu KM et al. Genesis of a highly pathogenic and potentially pandemic H5N1 influenza virus in eastern Asia. Nature 2004; 430:209–213 [View Article]
    [Google Scholar]
  221. Li Y, Chen S, Zhang X, Fu Q, Zhang Z et al. A 20-amino-acid deletion in the neuraminidase stalk and a five-amino-acid deletion in the NS1 protein both contribute to the pathogenicity of H5N1 avian influenza viruses in mallard ducks. PLOS One 2014; 9:e95539 [View Article]
    [Google Scholar]
  222. Haque M, Giasuddin M, Chowdhury E, Islam M. Molecular evolution of H5N1 highly pathogenic avian influenza viruses in bangladesh between 2007 and 2012. Avian Pathol 2014; 43:183–194 [View Article]
    [Google Scholar]
  223. World Health Organization Global Influenza Program Surveillance Network Evolution of H5N1 avian influenza viruses in Asia. Emerg Infect Dis 2005; 11:1515–1521 [View Article] [PubMed]
    [Google Scholar]
  224. Nagarajan S, Tosh C, Smith DK, Peiris JSM, Murugkar HV et al. Avian influenza (H5N1) virus of clade 2.3 in domestic poultry in india. PLoS One 2012; 7:e31844 [View Article] [PubMed]
    [Google Scholar]
  225. Wang J, Zeng Y, Xu S, Yang J, Wang W et al. A naturally occurring deletion in the effector domain of H5N1 swine influenza virus nonstructural protein 1 regulates viral fitness and host innate immunity. J Virol 2018; 92:e00149-18 [View Article] [PubMed]
    [Google Scholar]
  226. Long JS, Howard WA, Núñez A, Moncorgé O, Lycett S et al. The effect of the PB2 mutation 627K on highly pathogenic H5N1 avian influenza virus is dependent on the virus lineage. J Virol 2013; 87:9983–9996 [View Article]
    [Google Scholar]
  227. Świętoń E, Śmietanka K. Phylogenetic and molecular analysis of highly pathogenic avian influenza H5N8 and H5N5 viruses detected in Poland in 2016-2017. Transbound Emerg Dis 2018; 65:1664–1670 [View Article] [PubMed]
    [Google Scholar]
  228. Yamaji R, Saad MD, Davis CT, Swayne DE, Wang D et al. Pandemic potential of highly pathogenic avian influenza clade 2.3.4.4 A(H5) viruses. Rev Med Virol 2020; 30:e2099 [View Article] [PubMed]
    [Google Scholar]
  229. Li J, Gu M, Liu D, Liu B, Jiang K et al. Phylogenetic and biological characterization of three K1203 (H5N8)-like avian influenza A virus reassortants in China in 2014. Arch Virol 2016; 161:289–302 [View Article] [PubMed]
    [Google Scholar]
  230. Ajjaji D, Richard C-A, Mazerat S, Chevalier C, Vidic J. N-terminal domain of PB1-F2 protein of influenza A virus can fold into amyloid-like oligomers and damage cholesterol and cardiolipid containing membranes. Biochem Biophys Res Commun 2016; 477:27–32 [View Article] [PubMed]
    [Google Scholar]
  231. Fusaro A, Gonzales JL, Kuiken T, Mirinavičiūtė G, Niqueux É et al. Avian influenza overview December 2023-March 2024. EFSA J 2024; 22:e8754 [View Article] [PubMed]
    [Google Scholar]
  232. Alkie TN, Cox S, Embury-Hyatt C, Stevens B, Pople N et al. Characterization of neurotropic HPAI H5N1 viruses with novel genome constellations and mammalian adaptive mutations in free-living mesocarnivores in Canada. Emerg Microbes Infect 2023; 12:2186608 [View Article] [PubMed]
    [Google Scholar]
  233. Bauer L, Benavides FFW, Veldhuis Kroeze EJB, de Wit E, van Riel D. The neuropathogenesis of highly pathogenic avian influenza H5Nx viruses in mammalian species including humans. Trends Neurosci 2023; 46:953–970 [View Article] [PubMed]
    [Google Scholar]
  234. Jakobek BT, Berhane Y, Nadeau M-S, Embury-Hyatt C, Lung O et al. Influenza A(H5N1) virus infections in 2 free-ranging black bears (Ursus americanus), Quebec, Canada. Emerg Infect Dis 2023; 29:2145–2149 [View Article] [PubMed]
    [Google Scholar]
  235. Zinyakov N, Andriyasov A, Zhestkov P, Kozlov A, Nikonova Z et al. Analysis of avian influenza (H5N5) viruses isolated in the southwestern European part of the Russian Federation in 2020-2021. Viruses 2022; 14:2725 [View Article] [PubMed]
    [Google Scholar]
  236. Su S, Fu X, Li G, Kerlin F, Veit M. Novel influenza D virus: epidemiology, pathology, evolution, and biological characteristics. Virulence 2017; 8:1580–1591 [View Article] [PubMed]
    [Google Scholar]
  237. Ríos Carrasco M, Gröne A, van den Brand JMA, de Vries RP. The mammary glands of cows abundantly display receptors for circulating avian H5 viruses. J Virol 2024; 98:e0105224 [View Article] [PubMed]
    [Google Scholar]
  238. Kuchipudi SV, Nelli RK, Gontu A, Satyakumar R, Surendran Nair M et al. Sialic acid receptors: the key to solving the enigma of zoonotic virus spillover. Viruses 2021; 13:262 [View Article] [PubMed]
    [Google Scholar]
  239. Mostafa A, Naguib MM, Nogales A, Barre RS, Stewart JP et al. Avian influenza A (H5N1) virus in dairy cattle: origin, evolution, and cross-species transmission. mBio 2024; 15:e02542–24 [View Article]
    [Google Scholar]
  240. Wang M, Tscherne DM, McCullough C, Caffrey M, García-Sastre A et al. Residue Y161 of influenza virus hemagglutinin is involved in viral recognition of sialylated complexes from different hosts. J Virol 2012; 86:4455–4462 [View Article] [PubMed]
    [Google Scholar]
  241. Peacock TP, Moncla L, Dudas G, VanInsberghe D, Sukhova K et al. The global H5N1 influenza panzootic in mammals. Nature 2025; 637:304–313 [View Article] [PubMed]
    [Google Scholar]
  242. Rasmussen EA, Czaja A, Cuthbert FJ, Tan GS, Lemey P et al. Influenza A viruses in gulls in landfills and freshwater habitats in Minnesota, United States. Front Genet 2023; 14:1172048 [View Article] [PubMed]
    [Google Scholar]
  243. Adlhoch C, Fusaro A, Gonzales JL, Kuiken T, Mirinavičiūtė G et al. Avian influenza overview September-December 2023. EFSA J 2023; 21:e8539 [View Article] [PubMed]
    [Google Scholar]
  244. CFIA NEOC GIS Services High pathogenicity avian influenza in wildlife; 2024 https://cfia-ncr.maps.arcgis.com/apps/dashboards/89c779e98cdf492c899df23e1c38fdbc accessed 20 December 2024
  245. Canadian Food Inspection Agency Status of ongoing avian influenza response by province; 2024 https://inspection.canada.ca/en/animal-health/terrestrial-animals/diseases/reportable/avian-influenza/latest-bird-flu-situation/status-ongoing-response accessed 20 December 2024
  246. CDC H5 Bird Flu: Current Situation. n.d https://www.cdc.gov/bird-flu/situation-summary/index.html accessed 10 January 2025
  247. Zamani O, Bittmann T, Ortega DL. The effect of avian influenza outbreaks on retail price premiums in the United States poultry market. Poult Sci 2024; 103:104102 [View Article] [PubMed]
    [Google Scholar]
  248. Animal and Plant Health Inspection Service, USDA Detections of Highly Pathogenic Avian Influenza in Mammals. n.d https://www.aphis.usda.gov/livestock-poultry-disease/avian/avian-influenza/hpai-detections/mammals accessed 10 January 2025
  249. Martin NH, Trmcic A, Alcaine SD. Hot topic: avian influenza subtype H5N1 in US dairy—a preliminary dairy foods perspective. JDS Commun 2024; 5:S4–S7 [View Article]
    [Google Scholar]
  250. Rodriguez Z, Picasso-Risso C, O’Connor A, Ruegg PL. Hot topic: epidemiological and clinical aspects of highly pathogenic avian influenza H5N1 in dairy cattle. JDS Commun 2024; 5:S8–S12 [View Article] [PubMed]
    [Google Scholar]
  251. SENASICA Riesgos en la avicultura nacional e impactos económicos en los costos de producción avícola por los brotes de influenza aviar H5N1, en México; 2023 https://dj.senasica.gob.mx/analisissanitario/Secciones/3 accessed 6 March 2024
  252. Secretaria de Agricultura y Desarrollo Rural ACUERDO por el que se declara al territorio de los Estados Unidos Mexicanos, como zona libre de Influenza Aviar tipo A, subtipo H5N1; 2023 https://www.gob.mx/cms/uploads/attachment/file/862340/2023_10_04_MAT_sader.pdf accessed 6 March 2024
  253. Alcazar CJ, Guillén AM, Del Rio VCAI. Influenza aviar. CPA-DINESA 2024; 2:1–25
    [Google Scholar]
  254. World Organisation for Animal Health WAHIS: World Animal Health Information System; 2025 https://wahis.woah.org/#/home accessed 1 January 2025
  255. Adlhoch C, Baldinelli F. Avian influenza, new aspects of an old threat. Euro Surveill 2023; 28:2300227 [View Article] [PubMed]
    [Google Scholar]
  256. Castro-Sanguinetti G, Gonzalez-Veliz R, Callupe-Leyva A, Apaza-Chiara A, Jara J et al. Circulation of highly pathogenic avian influenza virus H5N1 clade 2.3.4.4b in highly diverse wild bird species from Peru. Res Sq 2023; 11–24 [View Article]
    [Google Scholar]
  257. Gamarra-Toledo V, Plaza PI, Gutiérrez R, Inga-Diaz G, Saravia-Guevara P et al. Mass mortality of marine mammals associated with highly pathogenic influenza virus (H5N1) in South America. Pathology 2023; 021–12 [View Article]
    [Google Scholar]
  258. Leguia M, Garcia-Glaessner A, Muñoz-Saavedra B, Juarez D, Barrera P et al. Highly pathogenic avian influenza A (H5N1) in marine mammals and seabirds in Peru. Nat Commun 2023; 14:5489 [View Article] [PubMed]
    [Google Scholar]
  259. O’Keeffe J. Avian influenza A(H5N1) and the continuing outbreak. Natl Collab Cnetre Environ Health 2023 https://ncceh.ca/resources/evidence briefs/avian-influenza-ah5n1-and-continuing-outbreak
    [Google Scholar]
  260. Godoy M, Oca MM de, Caro D, Pontigo JP, Kibenge M et al. Evolution and current status of influenza A virus in Chile: a review. Pathogens 2023; 12:1252 [View Article] [PubMed]
    [Google Scholar]
  261. Araújo AC, Cho AY, Silva LMN, Corrêa TC, Souza GC et al. Mortality in sea lions is associated with the introduction of the H5N1 clade 2.3. 4.4 b virus in brazil. BMC Vet Res-Rev 20231–12 [View Article]
    [Google Scholar]
  262. Kozlov M. US will vaccinate birds against avian flu for first time — what researchers think. Nature 2023; 618:220–221 [View Article]
    [Google Scholar]
  263. Kilpatrick AM, Chmura AA, Gibbons DW, Fleischer RC, Marra PP et al. Predicting the global spread of H5N1 avian influenza. Proceedings of the National Academy of Sciences of the United States of America 2006; 103:19368–19373 [View Article] [PubMed]
    [Google Scholar]
  264. CDC Technical Report: June 2024 Highly Pathogenic Avian Influenza A(H5N1) Viruses. n.d https://www.cdc.gov/bird-flu/php/technical-report/h5n1-06052024.html accessed 24 June 2023
  265. Cui P, Shi J, Wang C, Zhang Y, Xing X et al. Global dissemination of H5N1 influenza viruses bearing the clade 2.3.4.4b HA gene and biologic analysis of the ones detected in China. Emerg Microbes Infect 2022; 11:1693–1704 [View Article] [PubMed]
    [Google Scholar]
  266. Fusaro A, Zecchin B, Giussani E, Palumbo E, Agüero-García M et al. High pathogenic avian influenza A(H5) viruses of clade 2.3.4.4b in Europe—why trends of virus evolution are more difficult to predict. Virus Evol 2024; 10:veae027 [View Article] [PubMed]
    [Google Scholar]
/content/journal/jgv/10.1099/jgv.0.002081
Loading
/content/journal/jgv/10.1099/jgv.0.002081
Loading

Data & Media loading...

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An error occurred
Approval was partially successful, following selected items could not be processed due to error