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Abstract

Mosquitoes are known to transmit different arthropod-borne viruses belonging to various virus families. The exogenous small interfering RNA pathway plays an important role in the mosquito defence against such virus infections, with Dicer-2 (Dcr2) as one of the key proteins that initiates the cleavage of viral dsRNAs into 21 nt long virus-derived small interfering RNAs. Previous data identified the importance of various motifs in Dcr2 for its small interfering RNA (siRNA)-mediated antiviral activity. However, all these data focus on positive-strand RNA viruses, although negative-strand RNA viruses, like , include several important mosquito-borne viruses. Here, we aim to investigate the importance of different domains of Dcr2 for antiviral activity against viruses of the . For this, we used the derived Dcr2 knock-out cell line Aag2-AF319 to study the importance of the helicase, RNase III and PIWI–Argonaute–Zwille domains of Dcr2 on the antiviral activity of two viruses belonging to different families of the : the Rift Valley fever virus (RVFV) vaccine strain MP12 (, ) and the Bunyamwera orthobunyavirus (BUNV; , ). All three domains were determined to be critical for the antiviral activity against both RVFV and BUNV. Interestingly, one specific mutation in the helicase domain (KN) did not result in a loss of antiviral activity for RVFV, but for BUNV, despite losing the ability to produce 21 nt siRNAs.

Funding
This study was supported by the:
  • Deutsche Forschungsgemeinschaft (Award BE 5748/1-2, STE 1428/5-2, 398066876/GRK 2485/1)
    • Principle Award Recipient: SusannDornbusch
  • Deutsche Forschungsgemeinschaft (Award 497659464)
    • Principle Award Recipient: MelindaReuter
  • This is an open-access article distributed under the terms of the Creative Commons Attribution License.
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2024-11-07
2024-12-02
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References

  1. Brady OJ, Hay SI. The global expansion of dengue: how Aedes aegypti mosquitoes enabled the first pandemic arbovirus. Annu Rev Entomol 2020; 65:191–208 [View Article] [PubMed]
    [Google Scholar]
  2. Carvalho FD, Moreira LA. Why is Aedes aegypti Linnaeus so successful as a species?. Neotrop Entomol 2017; 46:243–255 [View Article] [PubMed]
    [Google Scholar]
  3. Halstead SB. Travelling arboviruses: a historical perspective. Travel Med Infect Dis 2019; 31:101471 [View Article] [PubMed]
    [Google Scholar]
  4. Weaver SC, Charlier C, Vasilakis N, Lecuit M. Zika, chikungunya, and other emerging vector-borne viral diseases. Annu Rev Med 2018; 69:395–408 [View Article] [PubMed]
    [Google Scholar]
  5. Weaver SC, Reisen WK. Present and future arboviral threats. Antiviral Res 2010; 85:328–345 [View Article] [PubMed]
    [Google Scholar]
  6. Pierson TC, Diamond MS. The continued threat of emerging flaviviruses. Nat Microbiol 2020; 5:796–812 [View Article] [PubMed]
    [Google Scholar]
  7. Huang Y-JS, Higgs S, Vanlandingham DL. Emergence and re-emergence of mosquito-borne arboviruses. Curr Opin Virol 2019; 34:104–109 [View Article] [PubMed]
    [Google Scholar]
  8. Zaid A, Burt FJ, Liu X, Poo YS, Zandi K et al. Arthritogenic alphaviruses: epidemiological and clinical perspective on emerging arboviruses. Lancet Infect Dis 2021; 21:e123–e133 [View Article] [PubMed]
    [Google Scholar]
  9. Kemp C, Imler J-L. Antiviral immunity in drosophila. Curr Opin Immunol 2009; 21:3–9 [View Article] [PubMed]
    [Google Scholar]
  10. Aliyari R, Ding S-W. RNA-based viral immunity initiated by the Dicer family of host immune receptors. Immunol Rev 2009; 227:176–188 [View Article] [PubMed]
    [Google Scholar]
  11. Elbashir SM, Harborth J, Lendeckel W, Yalcin A, Weber K et al. Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells. Nature 2001; 411:494–498 [View Article] [PubMed]
    [Google Scholar]
  12. Okamura K, Ishizuka A, Siomi H, Siomi MC. Distinct roles for Argonaute proteins in small RNA-directed RNA cleavage pathways. Genes Dev 2004; 18:1655–1666 [View Article] [PubMed]
    [Google Scholar]
  13. Merkling SH, Crist AB, Henrion-Lacritick A, Frangeul L, Gausson V et al. Multifaceted contributions of Dicer2 to arbovirus transmission by Aedes aegypti. bioRxiv 2022; 15: [View Article]
    [Google Scholar]
  14. Samuel GH, Pohlenz T, Dong Y, Coskun N, Adelman ZN et al. RNA interference is essential to modulating the pathogenesis of mosquito-borne viruses in the yellow fever mosquito Aedes aegypti. Proc Natl Acad Sci U S A 2023; 120:e2213701120 [View Article] [PubMed]
    [Google Scholar]
  15. Varjak M, Maringer K, Watson M, Sreenu VB, Fredericks AC et al. Aedes aegypti Piwi4 is a noncanonical PIWI protein involved in antiviral responses. mSphere 2017; 2:10 [View Article] [PubMed]
    [Google Scholar]
  16. Leggewie M, Scherer C, Altinli M, Gestuveo RJ, Sreenu VB et al. The Aedes aegypti RNA interference response against Zika virus in the context of co-infection with dengue and chikungunya viruses. PLoS Negl Trop Dis 2023; 17:e0011456 [View Article] [PubMed]
    [Google Scholar]
  17. Varjak M, Donald CL, Mottram TJ, Sreenu VB, Merits A et al. Characterization of the Zika virus induced small RNA response in Aedes aegypti cells. PLoS Negl Trop Dis 2017; 11:e0006010 [View Article] [PubMed]
    [Google Scholar]
  18. Scherer C, Knowles J, Sreenu VB, Fredericks AC, Fuss J et al. An Aedes aegypti-derived Ago2 knockout cell line to investigate arbovirus infections. Viruses 2021; 13:1066 [View Article] [PubMed]
    [Google Scholar]
  19. Mueller S, Gausson V, Vodovar N, Deddouche S, Troxler L et al. RNAi-mediated immunity provides strong protection against the negative-strand RNA vesicular stomatitis virus in Drosophila. Proc Natl Acad Sci U S A 2010; 107:19390–19395 [View Article] [PubMed]
    [Google Scholar]
  20. Weber F, Wagner V, Rasmussen SB, Hartmann R, Paludan SR. Double-stranded RNA is produced by positive-strand RNA viruses and DNA viruses but not in detectable amounts by negative-strand RNA viruses. J Virol 2006; 80:5059–5064 [View Article] [PubMed]
    [Google Scholar]
  21. Kidwell MA, Chan JM, Doudna JA. Evolutionarily conserved roles of the dicer helicase domain in regulating RNA interference processing. J Biol Chem 2014; 289:28352–28362 [View Article] [PubMed]
    [Google Scholar]
  22. Shabalina SA, Koonin EV. Origins and evolution of eukaryotic RNA interference. Trends Ecol Evol 2008; 23:578–587 [View Article] [PubMed]
    [Google Scholar]
  23. Sinha NK, Trettin KD, Aruscavage PJ, Bass BL. Drosophila dicer-2 cleavage is mediated by helicase- and dsRNA termini-dependent states that are modulated by Loquacious-PD. Mol Cell 2015; 58:406–417 [View Article] [PubMed]
    [Google Scholar]
  24. Sinha NK, Iwasa J, Shen PS, Bass BL. Dicer uses distinct modules for recognizing dsRNA termini. Science 2018; 359:329–334 [View Article] [PubMed]
    [Google Scholar]
  25. Ma J-B, Ye K, Patel DJ. Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain. Nature 2004; 429:318–322 [View Article] [PubMed]
    [Google Scholar]
  26. Ji X. The mechanism of RNase III action: how dicer dices. Curr Top Microbiol Immunol 2008; 320:99–116 [View Article] [PubMed]
    [Google Scholar]
  27. Sasaki T, Shimizu N. Evolutionary conservation of a unique amino acid sequence in human DICER protein essential for binding to Argonaute family proteins. Gene 2007; 396:312–320 [View Article] [PubMed]
    [Google Scholar]
  28. Gestuveo RJ, Parry R, Dickson LB, Lequime S, Sreenu VB et al. Mutational analysis of Aedes aegypti Dicer 2 provides insights into the biogenesis of antiviral exogenous small interfering RNAs. PLoS Pathog 2022; 18:e1010202 [View Article] [PubMed]
    [Google Scholar]
  29. Reuter M, Parry RH, McFarlane M, Gestuveo RJ, Arif R et al. The PAZ domain of Aedes aegypti Dicer 2 is critical for accurate and high-fidelity size determination of virus-derived small interfering RNAs. Microbiology 2024; 20: [View Article]
    [Google Scholar]
  30. Dietrich I, Jansen S, Fall G, Lorenzen S, Rudolf M et al. RNA Interference restricts rift valley fever virus in multiple insect systems. mSphere 2017; 2:e00090–17 [View Article]
    [Google Scholar]
  31. Dietrich I, Shi X, McFarlane M, Watson M, Blomström A-L et al. The antiviral RNAi response in vector and non-vector cells against orthobunyaviruses. PLoS Negl Trop Dis 2017; 11:e0005272 [View Article] [PubMed]
    [Google Scholar]
  32. Altinli M, Leggewie M, Schulze J, Gyanwali R, Badusche M et al. Antiviral RNAi response in Culex quinquefasciatus-derived HSU cells. Viruses 2023; 15:436 [View Article] [PubMed]
    [Google Scholar]
  33. Gerrard SR, Nichol ST. Synthesis, proteolytic processing and complex formation of N-terminally nested precursor proteins of the Rift Valley fever virus glycoproteins. Virology 2007; 357:124–133 [View Article] [PubMed]
    [Google Scholar]
  34. Mottram TJ, Li P, Dietrich I, Shi X, Brennan B et al. Mutational analysis of Rift Valley fever phlebovirus nucleocapsid protein indicates novel conserved, functional amino acids. PLoS Negl Trop Dis 2017; 11:e0006155 [View Article] [PubMed]
    [Google Scholar]
  35. Kading RC, Crabtree MB, Bird BH, Nichol ST, Erickson BR et al. Deletion of the NSm virulence gene of Rift Valley fever virus inhibits virus replication in and dissemination from the midgut of Aedes aegypti mosquitoes. PLoS Negl Trop Dis 2014; 8:e2670 [View Article] [PubMed]
    [Google Scholar]
  36. Billecocq A, Spiegel M, Vialat P, Kohl A, Weber F et al. NSs protein of Rift Valley fever virus blocks interferon production by inhibiting host gene transcription. J Virol 2004; 78:9798–9806 [View Article] [PubMed]
    [Google Scholar]
  37. Terasaki K, Ramirez SI, Makino S. Mechanistic insight into the host transcription inhibition function of Rift Valley fever virus NSs and its importance in virulence. PLoS Negl Trop Dis 2016; 10:e0005047 [View Article] [PubMed]
    [Google Scholar]
  38. Lerolle S, Freitas N, Cosset F-L, Legros V. Host cell restriction factors of bunyaviruses and viral countermeasures. Viruses 2021; 13:784 [View Article] [PubMed]
    [Google Scholar]
  39. Ly HJ, Ikegami T. Rift Valley fever virus NSs protein functions and the similarity to other bunyavirus NSs proteins. Virol J 2016; 13:118 [View Article] [PubMed]
    [Google Scholar]
  40. Balkema-Buschmann A, Rissmann M, Kley N, Ulrich R, Eiden M et al. Productive propagation of Rift Valley fever phlebovirus vaccine strain MP-12 in Rousettus aegyptiacus fruit bats. Viruses 2018; 10:681 [View Article] [PubMed]
    [Google Scholar]
  41. Tercero B, Terasaki K, Narayanan K, Makino S. Mechanistic insight into the efficient packaging of antigenomic S RNA into Rift Valley fever virus particles. Front Cell Infect Microbiol 2023; 13:1132757 [View Article] [PubMed]
    [Google Scholar]
  42. Szemiel AM, Failloux A-B, Elliott RM. Role of bunyamwera orthobunyavirus NSs protein in infection of mosquito cells. PLoS Negl Trop Dis 2012; 6:e1823 [View Article] [PubMed]
    [Google Scholar]
  43. Charlton FW, Hover S, Fuller J, Hewson R, Fontana J et al. Cellular cholesterol abundance regulates potassium accumulation within endosomes and is an important determinant in bunyavirus entry. J Biol Chem 2019; 294:7335–7347 [View Article] [PubMed]
    [Google Scholar]
  44. Shi X, Elliott RM. Generation and analysis of recombinant Bunyamwera orthobunyaviruses expressing V5 epitope-tagged L proteins. J Gen Virol 2009; 90:297–306 [View Article] [PubMed]
    [Google Scholar]
  45. Barr JN, Elliott RM, Dunn EF, Wertz GW. Segment-specific terminal sequences of Bunyamwera bunyavirus regulate genome replication. Virology 2003; 311:326–338 [View Article] [PubMed]
    [Google Scholar]
  46. Fredericks AC, Russell TA, Wallace LE, Davidson AD, Fernandez-Sesma A et al. Aedes aegypti (Aag2)-derived clonal mosquito cell lines reveal the effects of pre-existing persistent infection with the insect-specific bunyavirus Phasi Charoen-like virus on arbovirus replication. PLoS Negl Trop Dis 2019; 13:e0007346 [View Article] [PubMed]
    [Google Scholar]
  47. Varela M, Schnettler E, Caporale M, Murgia C, Barry G et al. Schmallenberg virus pathogenesis, tropism and interaction with the innate immune system of the host. PLoS Pathog 2013; 9:e1003133 [View Article] [PubMed]
    [Google Scholar]
  48. Chen S, Zhou Y, Chen Y, Gu J. fastp: an ultra-fast all-in-one FASTQ preprocessor. Bioinformatics 2018; 34:i884–i890 [View Article] [PubMed]
    [Google Scholar]
  49. Langmead B, Salzberg SL. Fast gapped-read alignment with Bowtie 2. Nat Methods 2012; 9:357–359 [View Article] [PubMed]
    [Google Scholar]
  50. Antoniewski C. Computing siRNA and piRNA overlap signatures. Methods Mol Biol 2014; 1173:135–146 [View Article] [PubMed]
    [Google Scholar]
  51. Crooks GE, Hon G, Chandonia J-M, Brenner SE. WebLogo: a sequence logo generator. Genome Res 2004; 14:1188–1190 [View Article] [PubMed]
    [Google Scholar]
  52. Quinlan AR, Hall IM. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 2010; 26:841–842 [View Article] [PubMed]
    [Google Scholar]
  53. Turell MJ, Rossi CA. Potential for mosquito transmission of attenuated strains of Rift Valley fever virus. Am J Trop Med Hyg 1991; 44:278–282 [View Article] [PubMed]
    [Google Scholar]
  54. Donald CL, Kohl A, Schnettler E. New insights into control of arbovirus replication and spread by insect RNA interference pathways. Insects 2012; 3:511–531 [View Article] [PubMed]
    [Google Scholar]
  55. Breving K, Esquela-Kerscher A. The complexities of microRNA regulation: mirandering around the rules. Int J Biochem Cell Biol 2010; 42:1316–1329 [View Article]
    [Google Scholar]
  56. O’Brien J, Hayder H, Zayed Y, Peng C. Overview of MicroRNA biogenesis, mechanisms of actions, and circulation. Front Endocrinol 2018; 9:402 [View Article]
    [Google Scholar]
  57. Varjak M, Leggewie M, Schnettler E. The antiviral piRNA response in mosquitoes?. J Gen Virol 2018; 99:1551–1562 [View Article] [PubMed]
    [Google Scholar]
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