Aphis glycines virus 1, a new bicistronic virus with two functional internal ribosome entry sites, is related to a group of unclassified viruses in the Picornavirales

References

1. Le Gall O, Christian P, Fauquet CM, King AMQ, Knowles NJ et al. Picornavirales, a proposed order of positive-sense single-stranded RNA viruses with a pseudo-T = 3 virion architecture. Arch Virol 2008; 153:715–727 [View Article]
   [Google Scholar]
2. Olendraite I, Lukhovitskaya NI, Porter SD, Valles SM, Firth AE. Polycipiviridae: a proposed new family of polycistronic picorna-like RNA viruses. J Gen Virol 2017; 98:2368–2378 [View Article]
   [Google Scholar]
3. Thompson JR, Dasgupta I, Fuchs M, Iwanami T, Karasev AV et al. ICTV Virus Taxonomy Profile: Secoviridae . J Gen Virol 2017; 98:529–531 [View Article]
   [Google Scholar]
4. Bonning BC, Miller WA. Dicistroviruses. Annu Rev Entomol 2010; 55:129–150 [View Article]
   [Google Scholar]
5. Reuter G, Boros Ákos, Földvári G, Szekeres S, Mátics R et al. Dicipivirus (family Picornaviridae) in wild Northern white-breasted hedgehog (Erinaceus roumanicus). Arch Virol 2018; 163:175–181 [View Article]
   [Google Scholar]
6. Tomaru Y, Nagasaki K. A new ssRNA virus genus infecting diatoms: Bacillarnavirus ; 2017
7. PCY W, SKP L, Choi GKY, Huang Y, Teng JLL et al. Natural occurrence and characterization of two internal ribosome entry site elements in a novel virus, canine picodicistrovirus, in the picornavirus-like superfamily. J Virol 2012; 86:2797–2808
   [Google Scholar]
8. Bonning BC. The Dicistroviridae: An emerging family of invertebrate viruses. Virol Sin 2009; 24:415–427 [View Article]
   [Google Scholar]
9. Tate J, Liljas L, Scotti P, Christian P, Lin TW et al. The crystal structure of cricket paralysis virus: the first view of a new virus family. Nat Struct Biol 1999; 6:765–774
   [Google Scholar]
10. Martinez-Salas E, Francisco-Velilla R, Fernandez-Chamorro J, Embarek AM. Insights into structural and mechanistic features of viral IRES elements. Front Microbiol 2018; 8:ARTN 2629 [View Article]
    [Google Scholar]
11. Gross L, Vicens Q, Einhorn E, Noireterre A, Schaeffer L et al. The _IRES5'UTR of the dicistrovirus cricket paralysis virus is a type III IRES containing an essential pseudoknot structure. Nucleic Acids Res 2017; 45:8993–9004 [View Article]
    [Google Scholar]
12. Roberts LO, Groppelli E. An atypical IRES within the 5′ UTR of a dicistrovirus genome. Virus Res 2009; 139:157–165 [View Article]
    [Google Scholar]
13. Feng Y, Krueger EN, Liu S, Dorman K, Bonning BC et al. Discovery of known and novel viral genomes in soybean aphid by deep sequencing. Phytobiomes 2017; 1:36–45 [View Article]
    [Google Scholar]
14. Liu S, Vijayendran D, Chen Y, Bonning B. Aphis glycines virus 2, a novel insect virus with a unique genome structure. Viruses 2016; 8:pii: E315 [View Article]
    [Google Scholar]
15. Moon JS, Domier LL, McCoppin NK, D'Arcy CJ, Jin H. Nucleotide sequence analysis shows that Rhopalosiphum padi virus is a member of a novel group of insect-infecting RNA viruses. Virology 1998; 243:54–65 [View Article]
    [Google Scholar]
16. Ryabov EV. A novel virus isolated from the aphid Brevicoryne brassicae with similarity to Hymenoptera picorna-like viruses. J Gen Virol 2007; 88:2590–2595 [View Article]
    [Google Scholar]
17. Shi M, Lin X-D, Vasilakis N, Tian J-H, Li C-X et al. Divergent viruses discovered in arthropods and vertebrates revise the evolutionary history of the Flaviviridae and related viruses. J Virol 2016; 90:659–669 [View Article]
    [Google Scholar]
18. van der Wilk F, Dullemans AM, Verbeek M, Van den Heuvel JF. Nucleotide sequence and genomic organization of Acyrthosiphon Pisum virus. Virology 1997; 238:353–362 [View Article]
    [Google Scholar]
19. Ragsdale DW, Voegtlin DJ, O’neil RJ, O'Neil RJ. Soybean aphid biology in North America. Ann Entomol Soc Am 2004; 97:204–208 [View Article]
    [Google Scholar]
20. Yasmin T, Nelson BD, Hobbs HA, McCoppin NK, Lambert KN et al. Molecular characterization of a new soybean-infecting member of the genus Nepovirus identified by high-throughput sequencing. Arch Virol 2017; 162:1089–1092 [View Article]
    [Google Scholar]
21. Kumar S, Stecher G, Tamura K. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 2016; 33:1870–1874 [View Article]
    [Google Scholar]
22. Hall TA. BioEdit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT. Nucl Acids Symp Ser 1999; 41:95–98
    [Google Scholar]
23. Domier LL, McCoppin NK. In vivo activity of Rhopalosiphum padi virus internal ribosome entry sites. J Gen Virol 2003; 84:415–419 [View Article]
    [Google Scholar]
24. Czibener C, Ugalde RA, La Torre JL, Muscio OA, Scodeller EA. Nucleotide sequence analysis of Triatoma virus shows that it is a member of a novel group of insect RNA viruses. J Gen Virol 2000; 81:1149–1154 [View Article]
    [Google Scholar]
25. Hunnicutt LE, Hunter WB, Cave RD, Powell CA, Mozoruk JJ. Genome sequence and molecular characterization of Homalodisca coagulata virus-1, a novel virus discovered in the glassy-winged sharpshooter (Hemiptera: Cicadellidae). Virology 2006; 350:67–78 [View Article]
    [Google Scholar]
26. Walker JE, Saraste M, Runswick MJ, Gay NJ. Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold. EMBO J 1982; 1:945–951 [View Article]
    [Google Scholar]
27. Koonin EV, Dolja VV, Morris TJ. Evolution and taxonomy of positive-strand RNA viruses: implications of comparative analysis of amino acid sequences. Crit Rev Biochem Mol Biol 1993; 28:375–430 [View Article]
    [Google Scholar]
28. François S, Mutuel D, Duncan A, Rodrigues L, Danzelle C et al. A new prevalent densovirus discovered in Acari. Insight from metagenomics in viral communities associated with two-spotted mite (Tetranychus urticae) populations. Viruses 2019; 11:pii: E233 [View Article]
    [Google Scholar]
29. Milusheva S, Phelan J, Piperkova N, Nikolova V, Gozmanova M et al. Molecular analysis of the complete genome of an unusual virus detected in sweet cherry (Prunus avium) in Bulgaria. Eur J Plant Pathol 2019; 153:197–207 [View Article]
    [Google Scholar]
30. Wilson JE, Powell MJ, Hoover SE, Sarnow P. Naturally occurring dicistronic cricket paralysis virus RNA is regulated by two internal ribosome entry sites. Mol Cell Biol 2000; 20:4990–4999 [View Article]
    [Google Scholar]
31. Roberts JMK, Anderson DL, Durr PA. Metagenomic analysis of Varroa-free Australian honey bees (Apis mellifera) shows a diverse Picornavirales virome. J Gen Virol 2018; 99:818–826 [View Article]
    [Google Scholar]
32. Shi M, Lin XD, Tian JH, Chen LJ, Chen X et al. Redefining the invertebrate RNA virosphere. Nature 2016; 540:539–543 [View Article]
    [Google Scholar]
33. Yinda CK, Zell R, Deboutte W, Zeller M, Conceição-Neto N et al. Highly diverse population of Picornaviridae and other members of the Picornavirales, in Cameroonian fruit bats. BMC Genomics 2017; 18:249 [View Article]
    [Google Scholar]
34. Gildow FE, D'Arcy CJ. Barley and oats as reservoirs for an aphid virus and the influence on barley yellow dwarf virus transmission. Phytopathology 1988; 78:811–816 [View Article]
    [Google Scholar]
35. Nakashima N, Uchiumi T. Functional analysis of structural motifs in dicistroviruses. Virus Res 2009; 139:137–147 [View Article]
    [Google Scholar]
36. Moore NF, Kearns A, Pullin JSK. Characterization of cricket paralysis virus-induced polypeptides in Drosophila cells. J Virol 1980; 33:1–9
    [Google Scholar]
37. Moore NF, Reavy B, Pullin JSK. Processing of cricket paralysis virus induced polypeptides Drosophila cells: production of high molecular weight polypeptides by treatment with iodoacetamide. Arch Virol 1981; 68:1–8 [View Article]
    [Google Scholar]