1887

Abstract

We have examined the expression profile of the influenza virus PA protein in pH1N1/2009 virus-infected cells. Immunoblotting analysis of virus-infected MDCK cells revealed the presence of full-length PA protein from 8 h post-infection, together with the simultaneous appearance of PA protein species of approximately 50, 35/39 and 20/25 kDa (collectively referred to as PA*). PA* was also detected in H1N1/WSN-virus-infected cells, indicating that its presence was not virus-specific, and it was also observed in virus-infected A549 and chick embryo fibroblast (CEF) cells, indicating that its presence was not cell-type-specific. PA* was detected in cells expressing the recombinant PA protein, indicating that the PA* formation occurred in the absence of virus infection. These data collectively indicated that PA* formation is an intrinsic property of PA gene expression. The association of PA* with purified influenza virus particles was demonstrated by immunoblotting, and a protease protection assay provided evidence that PA* was packaged into virus particles. The ribonucleoprotein (RNP) complex was isolated from purified influenza virus particles using glycerol gradient centrifugation, which demonstrated that PA* was associated with the RNP complex. To the best of our knowledge, this is the first report to demonstrate that PA protein species containing only segments of the C-terminal domain form during influenza virus infection. Furthermore, these truncated PA protein species are subsequently packaged into virus particles as part of the functional RNP complex.

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2017-05-01
2024-04-19
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References

  1. Palese P, Shaw ML. Orthomyxoviridae: the viruses and their replication. In Knipe DM, Howley PM. (editors) Fields Virology, 5th ed. United States: Wolters Kluwer Health; 2007
    [Google Scholar]
  2. Pons MW, Schulze IT, Hirst GK, Hauser R. Isolation and characterization of the ribonucleoprotein of influenza virus. Virology 1969; 39:250–259 [View Article][PubMed]
    [Google Scholar]
  3. Compans RW, Content J, Duesberg PH. Structure of the ribonucleoprotein of influenza virus. J Virol 1972; 10:795–800[PubMed]
    [Google Scholar]
  4. Murti KG, Webster RG, Jones IM. Localization of RNA polymerases on influenza viral ribonucleoproteins by immunogold labeling. Virology 1988; 164:562–566 [View Article][PubMed]
    [Google Scholar]
  5. Biswas SK, Boutz PL, Nayak DP. Influenza virus nucleoprotein interacts with influenza virus polymerase proteins. J Virol 1998; 72:5493–5501[PubMed]
    [Google Scholar]
  6. Boivin S, Cusack S, Ruigrok RW, Hart DJ. Influenza A virus polymerase: structural insights into replication and host adaptation mechanisms. J Biol Chem 2010; 285:28411–28417 [View Article][PubMed]
    [Google Scholar]
  7. Pflug A, Guilligay D, Reich S, Cusack S. Structure of influenza A polymerase bound to the viral RNA promoter. Nature 2014; 516:355–360 [View Article][PubMed]
    [Google Scholar]
  8. Tomassini J, Selnick H, Davies ME, Armstrong ME, Baldwin J et al. Inhibition of cap (m7GpppXm)-dependent endonuclease of influenza virus by 4-substituted 2,4-dioxobutanoic acid compounds. Antimicrob Agents Chemother 1994; 38:2827–2837 [View Article][PubMed]
    [Google Scholar]
  9. Doan L, Handa B, Roberts NA, Klumpp K. Metal ion catalysis of RNA cleavage by the influenza virus endonuclease. Biochemistry 1999; 38:5612–5619 [View Article][PubMed]
    [Google Scholar]
  10. Hara K, Schmidt FI, Crow M, Brownlee GG. Amino acid residues in the N-terminal region of the PA subunit of influenza A virus RNA polymerase play a critical role in protein stability, endonuclease activity, cap binding, and virion RNA promoter binding. J Virol 2006; 80:7789–7798 [View Article][PubMed]
    [Google Scholar]
  11. Dias A, Bouvier D, Crépin T, McCarthy AA, Hart DJ et al. The cap-snatching endonuclease of influenza virus polymerase resides in the PA subunit. Nature 2009; 458:914–918 [View Article][PubMed]
    [Google Scholar]
  12. Fodor E, Smith M. The PA subunit is required for efficient nuclear accumulation of the PB1 subunit of the influenza A virus RNA polymerase complex. J Virol 2004; 78:9144–9153 [View Article][PubMed]
    [Google Scholar]
  13. He X, Zhou J, Bartlam M, Zhang R, Ma J et al. Crystal structure of the polymerase PAC-PB1N complex from an avian influenza H5N1 virus. Nature 2008; 454:1123–1126 [View Article][PubMed]
    [Google Scholar]
  14. Obayashi E, Yoshida H, Kawai F, Shibayama N, Kawaguchi A et al. The structural basis for an essential subunit interaction in influenza virus RNA polymerase. Nature 2008; 454:1127–1131 [View Article][PubMed]
    [Google Scholar]
  15. Deng T, Engelhardt OG, Thomas B, Akoulitchev AV, Brownlee GG et al. Role of ran binding protein 5 in nuclear import and assembly of the influenza virus RNA polymerase complex. J Virol 2006; 80:11911–11919 [View Article][PubMed]
    [Google Scholar]
  16. Hutchinson EC, Orr OE, Man Liu S, Engelhardt OG, Fodor E. Characterization of the interaction between the influenza A virus polymerase subunit PB1 and the host nuclear import factor Ran-binding protein 5. J Gen Virol 2011; 92:1859–1869 [View Article][PubMed]
    [Google Scholar]
  17. González S, Zürcher T, Ortín J. Identification of two separate domains in the influenza virus PB1 protein involved in the interaction with the PB2 and PA subunits: a model for the viral RNA polymerase structure. Nucleic Acids Res 1996; 24:4456–4463 [View Article][PubMed]
    [Google Scholar]
  18. Perez DR, Donis RO. Functional analysis of PA binding by influenza A virus PB1: effects on polymerase activity and viral infectivity. J Virol 2001; 75:8127–8136 [View Article][PubMed]
    [Google Scholar]
  19. Poole E, Elton D, Medcalf L, Digard P. Functional domains of the influenza A virus PB2 protein: identification of NP- and PB1-binding sites. Virology 2004; 321:120–133 [View Article][PubMed]
    [Google Scholar]
  20. Ghanem A, Mayer D, Chase G, Tegge W, Frank R et al. Peptide-mediated interference with influenza A virus polymerase. J Virol 2007; 81:7801–7804 [View Article][PubMed]
    [Google Scholar]
  21. Poole EL, Medcalf L, Elton D, Digard P. Evidence that the C-terminal PB2-binding region of the influenza A virus PB1 protein is a discrete α-helical domain. FEBS Lett 2007; 581:5300–5306 [View Article][PubMed]
    [Google Scholar]
  22. Sugiyama K, Obayashi E, Kawaguchi A, Suzuki Y, Tame JR et al. Structural insight into the essential PB1-PB2 subunit contact of the influenza virus RNA polymerase. Embo J 2009; 28:1803–1811 [View Article][PubMed]
    [Google Scholar]
  23. Ulmanen I, Broni BA, Krug RM. Role of two of the influenza virus core P proteins in recognizing cap 1 structures (m7GpppNm) on RNAs and in initiating viral RNA transcription. Proc Natl Acad Sci USA 1981; 78:7355–7359 [View Article][PubMed]
    [Google Scholar]
  24. Blaas D, Patzelt E, Kuechler E. Identification of the cap binding protein of influenza virus. Nucleic Acids Res 1982; 10:4803–4812 [View Article][PubMed]
    [Google Scholar]
  25. Mukaigawa J, Nayak DP. Two signals mediate nuclear localization of influenza virus (A/WSN/33) polymerase basic protein 2. J Virol 1991; 65:245–253[PubMed]
    [Google Scholar]
  26. Tarendeau F, Boudet J, Guilligay D, Mas PJ, Bougault CM et al. Structure and nuclear import function of the C-terminal domain of influenza virus polymerase PB2 subunit. Nat Struct Mol Biol 2007; 14:229–233 [View Article][PubMed]
    [Google Scholar]
  27. Guilligay D, Tarendeau F, Resa-Infante P, Coloma R, Crepin T et al. The structural basis for cap binding by influenza virus polymerase subunit PB2. Nat Struct Mol Biol 2008; 15:500–506 [View Article][PubMed]
    [Google Scholar]
  28. Gabriel G, Klingel K, Otte A, Thiele S, Hudjetz B et al. Differential use of importin-α isoforms governs cell tropism and host adaptation of influenza virus. Nat Commun 2011; 2:156 [View Article][PubMed]
    [Google Scholar]
  29. Gabriel G, Herwig A, Klenk HD. Interaction of polymerase subunit PB2 and NP with importin α1 is a determinant of host range of influenza A virus. PLoS Pathog 2008; 4:e11 [View Article][PubMed]
    [Google Scholar]
  30. Reich S, Guilligay D, Pflug A, Malet H, Berger I et al. Structural insight into cap-snatching and RNA synthesis by influenza polymerase. Nature 2014; 516:361–366 [View Article][PubMed]
    [Google Scholar]
  31. Chang S, Sun D, Liang H, Wang J, Li J et al. Cryo-EM structure of influenza virus RNA polymerase complex at 4.3 Å resolution. Mol Cell 2015; 57:925–935 [View Article][PubMed]
    [Google Scholar]
  32. Paterson D, Fodor E. Emerging roles for the influenza A virus nuclear export protein (NEP). PLoS Pathog 2012; 8:e1003019 [View Article][PubMed]
    [Google Scholar]
  33. Jagger BW, Wise HM, Kash JC, Walters KA, Wills NM et al. An overlapping protein-coding region in influenza A virus segment 3 modulates the host response. Science 2012; 337:199–204 [View Article][PubMed]
    [Google Scholar]
  34. Akkina RK, Richardson JC, Aguilera MC, Yang CM. Heterogeneous forms of polymerase proteins exist in influenza A virus-infected cells. Virus Res 1991; 19:17–30 [View Article][PubMed]
    [Google Scholar]
  35. Muramoto Y, Noda T, Kawakami E, Akkina R, Kawaoka Y. Identification of novel influenza A virus proteins translated from PA mRNA. J Virol 2013; 87:2455–2462 [View Article][PubMed]
    [Google Scholar]
  36. Sutejo R, Yeo DS, Myaing MZ, Hui C, Xia J et al. Activation of type I and III interferon signalling pathways occurs in lung epithelial cells infected with low pathogenic avian influenza viruses. PLoS One 2012; 7:e33732 [View Article][PubMed]
    [Google Scholar]
  37. Ge Q, Mcmanus MT, Nguyen T, Shen CH, Sharp PA et al. RNA interference of influenza virus production by directly targeting mRNA for degradation and indirectly inhibiting all viral RNA transcription. Proc Natl Acad Sci USA 2003; 100:2718–2723 [View Article][PubMed]
    [Google Scholar]
  38. Gong YN, Chen GW, Chen CJ, Kuo RL, Shih SR. Computational analysis and mapping of novel open reading frames in influenza A viruses. PLoS One 2014; 9:e115016 [View Article][PubMed]
    [Google Scholar]
  39. Kozak M. Point mutations define a sequence flanking the AUG initiator codon that modulates translation by eukaryotic ribosomes. Cell 1986; 44:283–292 [View Article][PubMed]
    [Google Scholar]
  40. Kemler I, Whittaker G, Helenius A. Nuclear import of microinjected influenza virus ribonucleoproteins. Virology 1994; 202:1028–1033 [View Article][PubMed]
    [Google Scholar]
  41. Wu WW, Sun YH, Panté N. Nuclear import of influenza A viral ribonucleoprotein complexes is mediated by two nuclear localization sequences on viral nucleoprotein. Virol J 2007; 4:49 [View Article][PubMed]
    [Google Scholar]
  42. Akkina RK, Chambers TM, Londo DR, Nayak DP. Intracellular localization of the viral polymerase proteins in cells infected with influenza virus and cells expressing PB1 protein from cloned cDNA. J Virol 1987; 61:2217–2224[PubMed]
    [Google Scholar]
  43. Sanz-Ezquerro JJ, De La Luna S, Ortín J, Nieto A. Individual expression of influenza virus PA protein induces degradation of coexpressed proteins. J Virol 1995; 69:2420–2426[PubMed]
    [Google Scholar]
  44. Hara K, Shiota M, Kido H, Ohtsu Y, Kashiwagi T et al. Influenza virus RNA polymerase PA subunit is a novel serine protease with Ser624 at the active site. Genes Cells 2001; 6:87–97 [View Article][PubMed]
    [Google Scholar]
  45. Rodriguez A, Pérez-González A, Nieto A. Influenza virus infection causes specific degradation of the largest subunit of cellular RNA polymerase II. J Virol 2007; 81:5315–5324 [View Article][PubMed]
    [Google Scholar]
  46. Coloma R, Valpuesta JM, Arranz R, Carrascosa JL, Ortín J et al. The structure of a biologically active influenza virus ribonucleoprotein complex. PLoS Pathog 2009; 5:e1000491 [View Article][PubMed]
    [Google Scholar]
  47. Gerber M, Isel C, Moules V, Marquet R. Selective packaging of the influenza A genome and consequences for genetic reassortment. Trends Microbiol 2014; 22:446–455 [View Article][PubMed]
    [Google Scholar]
  48. Spackman E, Senne DA, Myers TJ, Bulaga LL, Garber LP et al. Development of a real-time reverse transcriptase PCR assay for type A influenza virus and the avian H5 and H7 hemagglutinin subtypes. J Clin Microbiol 2002; 40:3256–3260 [View Article][PubMed]
    [Google Scholar]
  49. Nieto A, De La Luna S, Bárcena J, Portela A, Ortín J. Complex structure of the nuclear translocation signal of influenza virus polymerase PA subunit. J Gen Virol 1994; 75:29–36 [View Article][PubMed]
    [Google Scholar]
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