Human immunodeficiency virus type 1 splicing at the major splice donor site is controlled by highly conserved RNA sequence and structural elements

References

1. Abbink T.E., Berkhout B. 2008; RNA structure modulates splicing efficiency at the human immunodeficiency virus type 1 major splice donor. J Virol 82:3090–3098 [View Article][PubMed]
   [Google Scholar]
2. Asang C., Erkelenz S., Schaal H. 2012; The HIV-1 major splice donor D1 is activated by splicing enhancer elements within the leader region and the p17-inhibitory sequence. Virology 432:133–145 [View Article][PubMed]
   [Google Scholar]
3. Cartegni L., Wang J., Zhu Z., Zhang M.Q., Krainer A.R. 2003; ESEfinder: a web resource to identify exonic splicing enhancers. Nucleic Acids Res 31:3568–3571 [View Article][PubMed]
   [Google Scholar]
4. Das A.T., Verhoef K., Berkhout B. 2004a; A conditionally replicating virus as a novel approach toward an HIV vaccine. Methods Enzymol 388:359–379 [View Article][PubMed]
   [Google Scholar]
5. Das A.T., Zhou X., Vink M., Klaver B., Verhoef K., Marzio G., Berkhout B. 2004b; Viral evolution as a tool to improve the tetracycline-regulated gene expression system. J Biol Chem 279:18776–18782 [View Article][PubMed]
   [Google Scholar]
6. Freund M., Asang C., Kammler S., Konermann C., Krummheuer J., Hipp M., Meyer I., Gierling W., Theiss S., other authors. 2003; A novel approach to describe a U1 snRNA binding site. Nucleic Acids Res 31:6963–6975 [View Article][PubMed]
   [Google Scholar]
7. Mueller N., van Bel N., Berkhout B., Das A.T. 2014; HIV-1 splicing at the major splice donor site is restricted by RNA structure. Virology 468–470:609–620 [View Article][PubMed]
   [Google Scholar]
8. Mueller N., Berkhout B., Das A.T. 2015; HIV-1 splicing is controlled by local RNA structure and binding of splicing regulatory proteins at the major 5′ splice site. J Gen Virol 96:1906–1917 [View Article][PubMed]
   [Google Scholar]
9. Roca X., Krainer A.R., Eperon I.C. 2013; Pick one, but be quick: 5′ splice sites and the problems of too many choices. Genes Dev 27:129–144 [View Article][PubMed]
   [Google Scholar]
10. Smith P.J., Zhang C., Wang J., Chew S.L., Zhang M.Q., Krainer A.R. 2006; An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet 15:2490–2508 [View Article][PubMed]
    [Google Scholar]
11. Zuker M. 2003; Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31:3406–3415 [View Article][PubMed]
    [Google Scholar]