Translation of the shallot virus X TGB3 gene depends on non-AUG initiation and leaky scanning

References

1. Arkhipov A.V., Gushchin V.A., Vishnichenko V.K., Solovyev A.G. 2013; Accumulation of changes in the genome of shallot virus X persisting in vegetatively reproduced plants. Dokl Biochem Biophys 452:237–240 [View Article][PubMed]
   [Google Scholar]
2. Castaño A., Ruiz L., Hernández C. 2009; Insights into the translational regulation of biologically active open reading frames of Pelargonium line pattern virus. Virology 386:417–426 [View Article][PubMed]
   [Google Scholar]
3. Chen J., Chen J., Adams M.J. 2001; Molecular characterisation of a complex mixture of viruses in garlic with mosaic symptoms in China. Arch Virol 146:1841–1853 [View Article][PubMed]
   [Google Scholar]
4. Dreher T.W., Miller W.A. 2006; Translational control in positive strand RNA plant viruses. Virology 344:185–197 [View Article][PubMed]
   [Google Scholar]
5. Firth A.E., Brierley I. 2012; Non-canonical translation in RNA viruses. J Gen Virol 93:1385–1409 [View Article][PubMed]
   [Google Scholar]
6. Gordon K., Fütterer J., Hohn T. 1992; Efficient initiation of translation at non-AUG triplets in plant cells. Plant J 2:809–813[PubMed]
   [Google Scholar]
7. Jackson A.O., Lim H.-S., Bragg J., Ganesan U., Lee M.Y. 2009; Hordeivirus replication, movement, and pathogenesis. Annu Rev Phytopathol 47:385–422 [View Article][PubMed]
   [Google Scholar]
8. Kanyuka K.V., Vishnichenko V.K., Levay K.E., Kondrikov D.Y., Ryabov E.V., Zavriev S.K. 1992; Nucleotide sequence of shallot virus X RNA reveals a 5′-proximal cistron closely related to those of potexviruses and a unique arrangement of the 3′-proximal cistrons. J Gen Virol 73:2553–2560 [View Article][PubMed]
   [Google Scholar]
9. Katis N.I., Maliogka V.I., Dovas C.I. 2012; Viruses of the genus Allium in the Mediterranean region. Adv Virus Res 84:163–208 [View Article][PubMed]
   [Google Scholar]
10. Kozak M. 1983; Comparison of initiation of protein synthesis in procaryotes, eucaryotes, and organelles. Microbiol Rev 47:1–45[PubMed]
    [Google Scholar]
11. Kozak M. 1989; Context effects and inefficient initiation at non-AUG codons in eucaryotic cell-free translation systems. Mol Cell Biol 9:5073–5080[PubMed] [CrossRef]
    [Google Scholar]
12. Kozak M. 2002; Pushing the limits of the scanning mechanism for initiation of translation. Gene 299:1–34 [View Article][PubMed]
    [Google Scholar]
13. Lauber E., Jonard G., Richards K., Guilley H. 2005; Nonregulated expression of TGBp3 of hordei-like viruses but not of potex-like viruses inhibits beet necrotic yellow vein virus cell-to-cell movement. Arch Virol 150:1459–1467 [View Article][PubMed]
    [Google Scholar]
14. Lim H.-S., Bragg J.N., Ganesan U., Ruzin S., Schichnes D., Lee M.Y., Vaira A.M., Ryu K.H., Hammond J., Jackson A.O. 2009; Subcellular localization of the barley stripe mosaic virus triple gene block proteins. J Virol 83:9432–9448 [View Article][PubMed]
    [Google Scholar]
15. Ling R., Pate A.E., Carr J.P., Firth A.E. 2013; An essential fifth coding ORF in the sobemoviruses. Virology 446:397–408 [View Article][PubMed]
    [Google Scholar]
16. Lukhovitskaya N.I., Solovieva A.D., Boddeti S.K., Thaduri S., Solovyev A.G., Savenkov E.I. 2013; An RNA virus-encoded zinc-finger protein acts as a plant transcription factor and induces a regulator of cell size and proliferation in two tobacco species. Plant Cell 25:960–973 [View Article][PubMed]
    [Google Scholar]
17. Lukhovitskaya N.I., Vetukuri R.R., Sama I., Thaduri S., Solovyev A.G., Savenkov E.I. 2014; A viral transcription factor exhibits antiviral RNA silencing suppression activity independent of its nuclear localization. J Gen Virol 95:2831–2837 [View Article][PubMed]
    [Google Scholar]
18. Memelink J., van der Vlugt C.I.M., Linthorst H.J.M., Derks A.F.L.M., Asjes C.J., Bol J.F. 1990; Homologies between the genomes of a carlavirus (lily symptomless virus) and a potexvirus (lily virus X) from lily plants. J Gen Virol 71:917–924 [View Article][PubMed]
    [Google Scholar]
19. Morozov S.Y., Solovyev A.G. 2003; Triple gene block: modular design of a multifunctional machine for plant virus movement. J Gen Virol 84:1351–1366 [View Article][PubMed]
    [Google Scholar]
20. Morozov S.Y., Solovyev A.G. 2012; Did silencing suppression counter-defensive strategy contribute to origin and evolution of the triple gene block coding for plant virus movement proteins?. Front Plant Sci 3:136 [View Article][PubMed]
    [Google Scholar]
21. Morozov S.Y., Solovyev A.G. 2015; Phylogenetic relationship of some ‘accessory’ helicases of plant positive-stranded RNA viruses: toward understanding the evolution of triple gene block. Front Microbiol 6:1–8 [View Article][PubMed]
    [Google Scholar]
22. Morozov S.Y., Miroshnichenko N.A., Solovyev A.G., Fedorkin O.N., Zelenina D.A., Lukasheva L.I., Karasev A.V., Dolja V.V., Atabekov J.G. 1991; Expression strategy of the potato virus X triple gene block. J Gen Virol 72:2039–2042 [View Article][PubMed]
    [Google Scholar]
23. Schepetilnikov M.V., Manske U., Solovyev A.G., Zamyatnin A.A Jr, Schiemann J., Morozov S.Y. 2005; The hydrophobic segment of Potato virus X TGBp3 is a major determinant of the protein intracellular trafficking. J Gen Virol 86:2379–2391 [View Article][PubMed]
    [Google Scholar]
24. Shemyakina E.A., Erokhina T.N., Gorshkova E.N., Schiemann J., Solovyev A.G., Morozov S.Y. 2011; Formation of protein complexes containing plant virus movement protein TGBp3 is necessary for its intracellular trafficking. Biochimie 93:742–748 [View Article][PubMed]
    [Google Scholar]
25. Smirnova E., Firth A.E., Miller W.A., Scheidecker D., Brault V., Reinbold C., Rakotondrafara A.M., Chung B.Y.-W., Ziegler-Graff V. 2015; Discovery of a small non-AUG-initiated ORF in Poleroviruses and Luteoviruses that is required for long-distance movement. PLoS Pathog 11:e1004868 [View Article][PubMed]
    [Google Scholar]
26. Solovyev A.G., Schiemann J., Morozov S.Y. 2012; Microscopic analysis of severe structural rearrangements of the plant endoplasmic reticulum and Golgi caused by overexpression of Poa semilatent virus movement protein. ScientificWorldJournal 2012:416076 [View Article][PubMed]
    [Google Scholar]
27. Solovyev A.G., Minina E.A., Makarova S.S., Erokhina T.N., Makarov V.V., Kaplan I.B., Kopertekh L., Schiemann J., Richert-Pöggeler K.R., Morozov S.Y. 2013; Subcellular localization and self-interaction of plant-specific Nt-4/1 protein. Biochimie 95:1360–1370 [View Article][PubMed]
    [Google Scholar]
28. Song S.I., Song J.T., Kim C.H., Lee J.S., Choi Y.D. 1998; Molecular characterization of the garlic virus X genome. J Gen Virol 79:155–159[PubMed] [CrossRef]
    [Google Scholar]
29. Sumi S., Tsuneyoshi T., Furutani H. 1993; Novel rod-shaped viruses isolated from garlic, Allium sativum, possessing a unique genome organization. J Gen Virol 74:1879–1885 [View Article][PubMed]
    [Google Scholar]
30. Sumi S., Matsumi T., Tsuneyoshi T. 1999; Complete nucleotide sequences of garlic viruses A and C, members of the newly ratified genus Allexivirus. Arch Virol 144:1819–1826 [View Article][PubMed]
    [Google Scholar]
31. Tamai A., Meshi T. 2001; Cell-to-cell movement of Potato virus X: the role of p12 and p8 encoded by the second and third open reading frames of the triple gene block. Mol Plant Microbe Interact 14:1158–1167 [View Article][PubMed]
    [Google Scholar]
32. Turina M., Maruoka M., Monis J., Jackson A.O., Scholthof K.B. 1998; Nucleotide sequence and infectivity of a full-length cDNA clone of panicum mosaic virus. Virology 241:141–155 [View Article][PubMed]
    [Google Scholar]
33. Verchot-Lubicz J., Torrance L., Solovyev A.G., Morozov S.Y., Jackson A.O., Gilmer D. 2010; Varied movement strategies employed by triple gene block-encoding viruses. Mol Plant Microbe Interact 23:1231–1247 [View Article][PubMed]
    [Google Scholar]
34. Vishnichenko V.K., Konareva T.N., Zavriev S.K. 1993; A new filamentous virus in shallot. Plant Pathol 42:121–126 [View Article]
    [Google Scholar]
35. Zavriev S.K., Vishnichenko V.K. 2000; Allexiviruses. In Virus Taxonomy: Seventh Report of the International Committee on Taxonomy of Viruses pp. 981–984 Edited by van Regenmortel M. H. V., Fauquet C. M., Bishop D. H. L., Carsten E. B., Estes M. K., Lemon S. M., Maniloff J., Mayo M. A., McGeoch D. J., other editors. San Diego, CA: Academic Press;
    [Google Scholar]
36. Zhou H., Jackson A.O. 1996; Expression of the barley stripe mosaic virus RNA beta triple gene block. Virology 216:367–379 [View Article][PubMed]
    [Google Scholar]