1887

Abstract

Arboviruses with genomes composed of 12 segments of double-stranded (ds) RNA have previously been classified as members or probable members of the genus within the family . A number of these viruses have been isolated in North America and Europe and are serologically and genetically related to Colorado tick fever virus, the type species. These isolates constitute subgroup A of the coltiviruses. The complete genome sequences are now presented of two Asian arboviruses, Kadipiro virus (KDV) and Banna virus (BAV), which are currently classified as subgroup B coltiviruses. Analysis of the viral protein sequences shows that all of the BAV genome segments have cognate genes in KDV. The functions of several of these proteins were also indicated by this analysis. Proteins with dsRNA-binding domains or with significant similarities to polymerases, methyltransferases, NTPases or protein kinases were identified. Comparisons of amino acid sequences of the conserved polymerase protein have shown that BAV and KDV are only very distantly related to the subgroup A coltiviruses. These data demonstrate a requirement for the subgroup B viruses to be reassigned to a separate new genus, for which the name is proposed.

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2000-06-01
2020-01-23
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References

  1. Anzola, J. V., Xu, Z. K., Asamizu, T. & Nuss, D. L. ( 1987; ). Segment-specific inverted repeats found adjacent to conserved terminal sequences in wound tumor virus genome and defective interfering RNAs. Proceedings of the National Academy of Sciences, USA 84, 8301-8305.[CrossRef]
    [Google Scholar]
  2. Attoui, H., De Micco, P. & de Lamballerie, X. ( 1997; ). Complete nucleotide sequence of Colorado tick fever virus segments M6, S1 and S2. Journal of General Virology 78, 2895-2899.
    [Google Scholar]
  3. Attoui, H., Charrel, R. N., Billoir, F., Cantaloube, J.-F., de Micco, P. & de Lamballerie, X. ( 1998; ). Comparative sequence analysis of American, European and Asian isolates of viruses in the genus Coltivirus. Journal of General Virology 79, 2481-2489.
    [Google Scholar]
  4. Barkovich, R. J., Shtanko, A., Shepherd, J. A., Lee, P. T., Myles, D. C., Tzagoloff, A. & Clarke, C. F. ( 1997; ). Characterization of the COQ5 gene from Saccharomyces cerevisiae. Evidence for a C-methyltransferase in ubiquinone biosynthesis. Journal of Biological Chemistry 272, 9182-9188.[CrossRef]
    [Google Scholar]
  5. Basak, A. K., Gouet, P., Grimes, J., Roy, P. & Stuart, D. ( 1996; ). Crystal structure of the top domain of African horse sickness virus VP7: comparison with bluetongue virus VP7. Journal of Virology 70, 3797-3806.
    [Google Scholar]
  6. Bremont, M., Juste-Lesage, P., Chabanne-Vautherot, D., Charpilienne, A. & Cohen, J. ( 1992; ). Sequences of the four larger proteins of a porcine group C rotavirus and comparison with the equivalent group A rotavirus proteins. Virology 186, 684-692.[CrossRef]
    [Google Scholar]
  7. Brown, S. E., Gorman, B. M., Tesh, R. B. & Knudson, D. L. ( 1993; ). Coltiviruses isolated from mosquitoes collected in Indonesia. Virology 196, 363-367.[CrossRef]
    [Google Scholar]
  8. Chastel, C., Main, A. J., Couatarmanac’h, A., Le Lay, G., Knudson, D. L., Quillien, M. C. & Beaucournu, J. C. ( 1984; ). Isolation of Eyach virus (Reoviridae, Colorado tick fever group) from Ixodes ricinus and I. ventalloi ticks in France. Archives of Virology 82, 161-171.[CrossRef]
    [Google Scholar]
  9. Chen, B. & Tao, S. ( 1996; ). Arbovirus survey in China in recent ten years. Chinese Medical Journal 109, 13-15.
    [Google Scholar]
  10. Emmons, R. W. ( 1988; ). Ecology of Colorado tick fever. Annual Review of Microbiology 42, 49-64.[CrossRef]
    [Google Scholar]
  11. Florio, L., Stewart, M. & Mugrage, E. R. ( 1946; ). The etiology of Colorado tick fever. Journal of Experimental Medicine 83, 1-10.
    [Google Scholar]
  12. Florio, L., Miller, M. S. & Mugrage, E. R. ( 1950; ). Colorado tick fever. Isolation of the virus from Dermacentor andersoni in nature and laboratory study of the transmission of the virus in the tick. Journal of Immunology 64, 257-263.
    [Google Scholar]
  13. Holmes, I. H., Boccardo, G., Estes, M. K., Furuichi, M. K., Hoshino, Y., Joklik, W. K., McCrae, M., Mertens, P. P. C., Milne, R. G., Samal, K. S. K., Shikata, E., Winton, J. R., Uyeda, I. & Nuss, D. L. ( 1995; ). Family Reoviridae. In Virus Taxonomy. Sixth Report of the International Committee on Taxonomy of Viruses, pp. 208-239. Edited by F. A. Murphy, C. M. Fauquet, D. H. L. Bishop, S. A. Ghabrial, A. W. Jarvis, G. P. Martelli, M. A. Mayo & M. D. Summers. Vienna & New York: Springer-Verlag.
  14. Illana, B., Zaballos, A., Blanco, L. & Salas, M. ( 1998; ). The RGD sequence in phage ϕ29 terminal protein is required for interaction with ϕ29 DNA polymerase. Virology 248, 12-19.[CrossRef]
    [Google Scholar]
  15. Juuti, J. T., Bamford, D. H., Tuma, R. & Thomas, G. J.Jr ( 1998; ). Structure and NTPase activity of the RNA-translocating protein (P4) of bacteriophage ϕ6. Journal of Molecular Biology 279, 347-359.[CrossRef]
    [Google Scholar]
  16. Karabatsos, N., Poland, J. D., Emmons, R. W., Mathews, J. H., Calisher, C. H. & Wolff, K. L. ( 1987; ). Antigenic variants of Colorado tick fever virus. Journal of General Virology 68, 1463-1469.[CrossRef]
    [Google Scholar]
  17. Kumar, S., Tamura, K. & Nei, M. (1993). MEGA – Molecular Evolutionary Genetics Analysis, version 1.01. Pennsylvania State University, University Park, PA, USA.
  18. Kyte, J. & Doolittle, R. F. ( 1982; ). A simple method for displaying the hydropathic character of a protein. Journal of Molecular Biology 157, 105-132.[CrossRef]
    [Google Scholar]
  19. Lambden, P. R., Cooke, S. J., Caul, E. O. & Clarke, I. N. ( 1992; ). Cloning of noncultivatable human rotavirus by single primer amplification. Journal of Virology 66, 1817-1822.
    [Google Scholar]
  20. Lane, R. S., Emmons, R. W., Devlin, V., Dondero, D. V. & Nelson, B. C. ( 1982; ). Survey for evidence of Colorado tick fever virus outside of the known endemic area in California. American Journal of Tropical Medicine and Hygiene 31, 837-843.
    [Google Scholar]
  21. Mertens, P. P. C., Arella, M., Attoui, H., Belloncik, S., Bergoin, M., Boccardo, G., Booth, T. F., Chiu, W., Diprose, J. M., Duncan, R. and others (2000). Reoviridae. In Virus Taxonomy. Seventh Report of the International Committee for the Taxonomy of Viruses. Edited by M. H. V. Van Regenmortel, C. M. Fauquet, D. H. L. Bishop, C. H. Calisher, E. B. Carsten, M. K. Estes, S. M. Lemon, J. Maniloff, M. A. Mayo, D. J. McGeoch, C. R. Pringle & R. B. Wickner. New York: Academic Press.
  22. Page, R. D. ( 1996; ). TreeView: an application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences 12, 357-358.
    [Google Scholar]
  23. Ramadevi, N., Burroughs, J. N., Mertens, P. P. C., Jones, I. M. & Roy, P. ( 1998; ). Capping and methylation of mRNA by purified recombinant VP4 protein of bluetongue virus. Proceedings of the National Academy of Sciences, USA 95, 13537-13542.[CrossRef]
    [Google Scholar]
  24. Rehse-Küpper, B., Casals, J., Rehse, E. & Ackermann, R. ( 1976; ). Eyach – an arthropod-borne virus related to Colorado tick fever virus in the Federal Republic of Germany. Acta Virologica 20, 339-342.
    [Google Scholar]
  25. Roivainen, M., Hyypia, T., Piirainen, L., Kalkkinen, N., Stanway, G. & Hovi, T. ( 1991; ). RGD-dependent entry of coxsackievirus A9 into host cells and its bypass after cleavage of VP1 protein by intestinal proteases. Journal of Virology 65, 4735-4740.
    [Google Scholar]
  26. Seliger, L. S., Zheng, K. & Shatkin, A. J. ( 1987; ). Complete nucleotide sequence of reovirus L2 gene and deduced amino acid sequence of viral mRNA guanylyltransferase. Journal of Biological Chemistry 262, 16289-16293.
    [Google Scholar]
  27. Stauber, N., Martinez-Costas, J., Sutton, G., Monastyrskaya, K. & Roy, P. ( 1997; ). Bluetongue virus VP6 protein binds ATP and exhibits an RNA-dependent ATPase function and a helicase activity that catalyze the unwinding of double-stranded RNA substrates. Journal of Virology 71, 7220-7226.
    [Google Scholar]
  28. Thompson, J. D., Higgins, D. G. & Gibson, T. J. ( 1994; ). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22, 4673-4680.[CrossRef]
    [Google Scholar]
  29. Xu, Z. K., Anzola, J. V., Nalin, C. M. & Nuss, D. L. ( 1989; ). The 3′-terminal sequence of a wound tumor virus transcript can influence conformational and functional properties associated with the 5′-terminus. Virology 170, 511-522.[CrossRef]
    [Google Scholar]
  30. Xu, P., Wang, Y., Zuo, J., Lin, J. & Xu, P. ( 1990; ). New orbiviruses isolated from patients with unknown fever and encephalitis in Yunnan province. Chinese Journal of Virology 6, 27-33.
    [Google Scholar]
  31. Yue, Z. & Shatkin, A. J. ( 1998; ). Enzymatic control of functions in reovirus structural proteins. In Reoviruses I. Structure, Proteins, and Genetics, pp. 31-56. Edited by K. L. Tyler & M. B. A. Oldstone. Berlin: Springer.
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