Sequence analysis of a porcine enterovirus serotype 1 isolate: relationships with other picornaviruses

References

1. Alexander T. J. L., Betts A. O. 1967; Further studies on porcine enteroviruses isolated at Cambridge. I. Infections in SPF pigs and the preparation of monospecific antisera. Research in Veterinary Science 8:321–329
   [Google Scholar]
2. Auerbach J., Prager D., Neuhaus S., Loss U., Witte K. H. 1994; Grouping of porcine enteroviruses by indirect immunofluorescence and description of two new serotypes. Journal of Veterinary Medicine Series B 41:277–282
   [Google Scholar]
3. Auvinen P., Hyypiä T. 1990; Echoviruses include genetically distinct serotypes. Journal of General Virology 71:2133–2139
   [Google Scholar]
4. Bachrach H. L., Swaney J. V., van de Woude G. F. 1973; Isolation of the structural polypeptides of foot-and-mouth disease virus and analysis of their C-terminal sequences. Virology 52:520–528
   [Google Scholar]
5. Chang K. H., Auvinen P., Hyypiä T., Stanway G. 1989; The nucleotide sequence of coxsackievirus A9; implications for receptor binding and enterovirus classification. Journal of General Virology 70:3269–3280
   [Google Scholar]
6. Chow M., Newman J. F. E., Filman D., Hogle J. M., Rowlands D. J., Brown F. 1987; Myristylation of picornavirus capsid protein VP4 and its structural significance. Nature 327:482–486
   [Google Scholar]
7. Cohen J. I., Ticehurst J. R., Purcell R. H., Buckler-Whilte A., Baroudy B. M. 1987; Complete nucleotide sequence of wild-type hepatitis A virus: comparison with different strains of hepatitis A virus and other picornaviruses. Journal of Virology 61:50–59
   [Google Scholar]
8. Cui T., Porter A. G. 1995; Localization of binding site for the encephalomyocarditis virus RNA polymerase in the 3′-noncoding region of the viral RNA. Nucleic Acids Research 23:377–382
   [Google Scholar]
9. Donnelly M. L. L., Gani D., Flint M., Monaghan S., Ryan M. D. 1997; The cleavage activities of aphthovirus and cardiovirus 2A proteins. Journal of General Virology 78:13–21
   [Google Scholar]
10. Duke G. M., Hoffman M. A., Palmenberg A. C. 1992; Sequence and structural elements that contribute to efficient encephalomyocarditis virus RNA translation. Journal of Virology 66:1602–1609
    [Google Scholar]
11. Earle J. A. P., Skuce R. A., Fleming C. S., Hoey E. M., Martin S. J. 1988; The complete nucleotide sequence of a bovine enterovirus. Journal of General Virology 69:253–263
    [Google Scholar]
12. Felsenstein J. 1989; PHYLIP – Phylogeny Inference Package, version 3.2. Cladistics 5:164–166
    [Google Scholar]
13. Forss S., Strebel K., Beck E., Schaller H. 1984; Nucleotide sequence and genomic organization of foot-and-mouth disease virus. Nucleic Acids Research 12:6587–6601
    [Google Scholar]
14. Gorbalenya A. E., Koonin E. V., Lai M. M. C. 1991; Putative papain-related thiol proteases of positive-strand RNA viruses. FEBS Letters 288:201–255
    [Google Scholar]
15. Harding J. O. J., Done J. T., Kershaw G. F. 1957; A transmissible polio-encephalomyelitis of pigs (Talfan disease. Veterinary Record 69:824–832
    [Google Scholar]
16. Honda E., Hattori I., Dohara Y., Taniguchi T., Ariyama K., Kimata A., Nagamine N., Kumagai T. 1990; Sero- and CPE- types of porcine enteroviruses isolated from healthy and diarrheal pigs: possible association of CPE type II with diarrhea. Japanese Journal of Veterinary Science 52:85–90
    [Google Scholar]
17. Hyypiä T., Horsnell C., Maaronen M., Khan M., Kalkkinen N., Auvinen P., Kinnunen L., Stanway G. 1992; A distinct picornavirus group identified by sequence analysis. Proceedings of the National Academy of Sciences USA 89:8847–8851
    [Google Scholar]
18. Hyypiä T., Hovi T., Knowles N. J., Stanway G. 1997; Classification of enteroviruses based on molecular and biological properties. Journal of General Virology 78:1–11
    [Google Scholar]
19. Iizuka N., Kuge S., Nomoto A. 1987; Complete nucleotide sequence of the genome of coxsackievirus B1. Virology 156:64–73
    [Google Scholar]
20. Inoue T., Suzuki T., Sekiguchi K. 1989; The complete nucleotide sequence of swine vesicular disease virus. Journal of General Virology 70:919–934
    [Google Scholar]
21. Jaeger J. A., Turner D. H., Zuker M. 1989; Improved predictions for secondary structures for RNA. Proceedings of the National Academy of Sciences USA 86:7706–7710
    [Google Scholar]
22. Jones D. T., Taylor W. R., Thornton J. M. 1992; The rapid generation of mutation data matrices from protein sequences. CABIOS 8:275–282
    [Google Scholar]
23. Kaku Y., Yamada S., Hihara H. 1998 The genetic analysis of porcine enterovirus-1. Abstracts of the Xth Meeting of the European Study Group on the Molecular Biology of Picornaviruses (EUROPIC’98) , Poster V71
    [Google Scholar]
24. Knowles N. J., Buckley L. S., Pereira H. G. 1979; Classification of porcine enteroviruses by antigenic analysis and cytopathic effects in tissue culture: description of three new serotypes. Archives of Virology 62:201–208
    [Google Scholar]
25. Kozak M. 1987; An analysis of 5′ non-coding sequences from 699 vertebrate messenger RNAs. Nucleic Acids Research 15:8125–8148
    [Google Scholar]
26. Kurz C., Forss S., Kupper H., Strohmaier K., Schaller H. 1981; Nucleotide sequence and corresponding amino acid sequence of the gene for the major antigen of foot and mouth disease. Nucleic Acids Research 9:1919–1931
    [Google Scholar]
27. Li F., Browning G. F., Studdert M. J., Crabb B. S. 1996; Equine rhinovirus 1 is more closely related to foot-and-mouth disease virus than to other picornaviruses. Proceedings of the National Academy of Sciences USA 93:990–995
    [Google Scholar]
28. McIlhatton M., Hoey E. M., Martin S. J. 1993 The nucleotide sequence of bovine enterovirus strain M4. Abstracts of the IXth International Congress of Virology Glasgow, Scotland: 18019–20
    [Google Scholar]
29. McNally R. M. P., Earle J. A. P., McIlhatton M., Hoey E. M., Martin S. J. 1994; The nucleotide sequence of the 5′ non-coding and capsid coding genome regions of two bovine enterovirus strains. Archives of Virology 139:287–299
    [Google Scholar]
30. Martin S. J., Johnston M. D., Clements J. B. 1970; Purification and characterization of bovine enteroviruses. Journal of General Virology 7:103–113
    [Google Scholar]
31. Meerovitch K., Sonenberg N. 1993; Internal initiation of picornavirus RNA translation. Seminars in Virology 4:217–227
    [Google Scholar]
32. Neff S., Sa-Carvalho D., Rieder E., Mason P. W., Blystone S. D., Brown E. J., Baxt B. 1998; Foot-and-mouth disease virus virulent for cattle utilizes the integrin α_vβ₃ as its receptor. Journal of Virology 72:3587–3594
    [Google Scholar]
33. Nomoto A., Omata T., Toyoda H., Kuge S., Horie H., Kataoka Y., Genba Y., Nakano Y., Imura N. 1982; Complete nucleotide sequence of the attenuated poliovirus Sabin 1 strain genome. Proceedings of the National Academy of Sciences, USA 79:5793–5797
    [Google Scholar]
34. Pevear D. C., Borkowski J., Calenoff M., Oh C. K., Ostrowski B., Lipton H. L. 1988; Insights into Theiler’s virus neurovirulence based on a genomic comparison of the neurovirulent GDVII and less virulent BeAn strains. Virology 165:1–12
    [Google Scholar]
35. Piccone M. E., Zellner M., Kumosinki T. F., Mason P. W., Grubman M. 1995; Identification of the active site of foot-and-mouth disease virus leader proteinase. Journal of Virology 69:4950–4956
    [Google Scholar]
36. Pöyry T., Kinnunen L., Hyypiä T., Brown B., Horsnell C., Hovi T., Stanway G. 1996; Genetic and phylogenetic clustering of enteroviruses. Journal of General Virology 77:1699–1717
    [Google Scholar]
37. Queen C., Korn L. J. 1984; A comprehensive sequence analysis program for the IBM personal computer. Nucleic Acids Research 12:581–599
    [Google Scholar]
38. Roberts P. J., Belsham G. J. 1995; Identification of critical amino acids within the foot-and-mouth disease virus leader protein, a cysteine protease. Virology 213:140–146
    [Google Scholar]
39. Ryan M. D., Flint M. 1997; Virus-encoded proteinases of the picornavirus super-group. Journal of General Virology 78:699–723
    [Google Scholar]
40. Ryan M. D., Jenkins O., Hughes P. J., Brown A., Knowles N. J., Booth D., Minor P. D., Almond J. W. 1990; The complete nucleotide sequence of enterovirus type 70: relationships with other members of the Picornaviridae. Journal of General Virology 71:2291–2299
    [Google Scholar]
41. Stanway G., Hughes P. J., Mountford R. C., Minor P. D., Almond J. W. 1984; The complete nucleotide sequence of a common cold virus: human rhinovirus 14. Nucleic Acids Research 12:7859–7875
    [Google Scholar]
42. Strimmer K., von Haesler A. 1996; Quartet puzzling: a quartet maximum likelihood method for constructing tree topologies. Molecular Biology and Evolution 13:964–969
    [Google Scholar]
43. Strimmer K., von Haesler A. 1997; Likelihood mapping: a simple method to visualise phylogenetic content of a sequence alignment. Proceedings of the National Academy of Sciences, USA 94:6815–6819
    [Google Scholar]
44. Templeton A. R. 1983; Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to the evolution of humans and apes. Evolution 37:221–224
    [Google Scholar]
45. Thompson J. D., Higgins D. G., Gibson T. J. 1994; CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22:4673–4680
    [Google Scholar]
46. Todd D., Martin S. J. 1979; Studies of the replication of a bovine enterovirus RNA. Journal of General Virology 43:75–89
    [Google Scholar]
47. Trefny L. 1930; Massive illness of swine in Teschen area. Zvoroleki Obzori 23:235–236
    [Google Scholar]
48. Wutz G., Auer H., Nowotny N., Grosse B., Skern T., Kuechler E. 1996; Equine rhinoviruses serotypes 1 and 2: relationship to each other and to aphthoviruses and cardioviruses. Journal of General Virology 77:1719–1730
    [Google Scholar]
49. Yamashita T., Sakae K., Tsuzuki H., Suzuki Y., Ishikawa N., Takeda N., Miyamura T., Yamazaki S. 1998; Complete nucleotide sequence and genetic organization of Aichi virus, a distinct member of the Picornaviridae associated with acute gastroenteritis in humans. Journal of Virology 72:8408–8412
    [Google Scholar]
50. Zuker M. 1989; On finding all suboptimal foldings of an RNA molecule. Science 244:48–52
    [Google Scholar]